RNA–Protein interactions for RNA: ENST00000504672.5

PDGFC-204, Transcript of platelet derived growth factor C, humanhuman

TSL 5

Gene PDGFC, Length 786 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-204ENST00000504672 E9PCH4 1651 aa13.91□□□□□ -0.18
PDGFC-204ENST00000504672 SF3B2Q13435 895 aaKnown RBP13.91□□□□□ -0.18
PDGFC-204ENST00000504672 NRXN3Q9Y4C0 1643 aa13.9□□□□□ -0.18
PDGFC-204ENST00000504672 UNC5CLQ8IV45 518 aa13.9□□□□□ -0.18
PDGFC-204ENST00000504672 SEPT12Q8IYM1 358 aa13.9□□□□□ -0.18
PDGFC-204ENST00000504672 BLMP54132 1417 aaPredicted RBP13.9□□□□□ -0.19
PDGFC-204ENST00000504672 NPHP3Q7Z494 1330 aa13.88□□□□□ -0.19
PDGFC-204ENST00000504672 CCDC9Q9Y3X0 531 aaKnown RBP13.87□□□□□ -0.19
PDGFC-204ENST00000504672 NALCNQ8IZF0 1738 aa13.87□□□□□ -0.19
PDGFC-204ENST00000504672 MYOM2P54296 1465 aa13.87□□□□□ -0.19
PDGFC-204ENST00000504672 RALGAPBQ86X10 1494 aa13.87□□□□□ -0.19
PDGFC-204ENST00000504672 HRCP23327 699 aa13.86□□□□□ -0.19
PDGFC-204ENST00000504672 CABLES1Q8TDN4 633 aa13.86□□□□□ -0.19
PDGFC-204ENST00000504672 STK26Q9P289 416 aa13.85□□□□□ -0.19
PDGFC-204ENST00000504672 VGFO15240 615 aaPredicted RBP13.84□□□□□ -0.19
PDGFC-204ENST00000504672 KRT27Q7Z3Y8 459 aa13.84□□□□□ -0.19
PDGFC-204ENST00000504672 WAPLQ7Z5K2 1190 aa13.84□□□□□ -0.19
PDGFC-204ENST00000504672 A0A0G2JS52 829 aa13.83□□□□□ -0.2
PDGFC-204ENST00000504672 MYT1Q01538 1121 aa13.83□□□□□ -0.2
PDGFC-204ENST00000504672 HAP1P54257 671 aaPredicted RBP13.82□□□□□ -0.2
PDGFC-204ENST00000504672 CACNB1Q02641 598 aaPredicted RBP13.82□□□□□ -0.2
PDGFC-204ENST00000504672 EN1Q05925 392 aaPredicted RBP13.82□□□□□ -0.2
PDGFC-204ENST00000504672 R3HDM1Q15032 1099 aaKnown RBP13.82□□□□□ -0.2
PDGFC-204ENST00000504672 FAM182BQ5T319 152 aa13.82□□□□□ -0.2
PDGFC-204ENST00000504672 KRT28Q7Z3Y7 464 aa13.82□□□□□ -0.2
PDGFC-204ENST00000504672 PPARGC1BQ86YN6 1023 aaKnown RBP13.82□□□□□ -0.2
PDGFC-204ENST00000504672 IQGAP3Q86VI3 1631 aa13.82□□□□□ -0.2
PDGFC-204ENST00000504672 ROCK1Q13464 1354 aa13.82□□□□□ -0.2
PDGFC-204ENST00000504672 PXDNQ92626 1479 aa13.81□□□□□ -0.2
PDGFC-204ENST00000504672 VPS72Q15906 364 aa13.81□□□□□ -0.2
PDGFC-204ENST00000504672 LAMC1P11047 1609 aa13.8□□□□□ -0.2
PDGFC-204ENST00000504672 BAG6P46379 1132 aa13.8□□□□□ -0.2
PDGFC-204ENST00000504672 LMOD2Q6P5Q4 547 aa13.8□□□□□ -0.2
PDGFC-204ENST00000504672 SPATA31A3Q5VYP0 1347 aa13.8□□□□□ -0.2
PDGFC-204ENST00000504672 NEXMIFQ5QGS0 1516 aa13.8□□□□□ -0.2
PDGFC-204ENST00000504672 GLI3P10071 1580 aa13.79□□□□□ -0.2
PDGFC-204ENST00000504672 ONECUT3O60422 494 aaPredicted RBP13.79□□□□□ -0.2
PDGFC-204ENST00000504672 SLIT2O94813 1529 aa13.79□□□□□ -0.2
PDGFC-204ENST00000504672 COL22A1Q8NFW1 1626 aaPredicted RBP13.79□□□□□ -0.2
PDGFC-204ENST00000504672 FAM98CQ17RN3 349 aaKnown RBP13.78□□□□□ -0.2
PDGFC-204ENST00000504672 LRPPRCP42704 1394 aaKnown RBP13.78□□□□□ -0.2
PDGFC-204ENST00000504672 HFM1A2PYH4 1435 aa13.78□□□□□ -0.2
PDGFC-204ENST00000504672 FAM83GA6ND36 823 aa13.77□□□□□ -0.21
PDGFC-204ENST00000504672 TMEM132EQ6IEE7 984 aa13.77□□□□□ -0.21
PDGFC-204ENST00000504672 NAIPQ13075 1403 aa13.75□□□□□ -0.21
PDGFC-204ENST00000504672 PLEKHH1Q9ULM0 1364 aa13.74□□□□□ -0.21
PDGFC-204ENST00000504672 YY1P25490 414 aa13.74□□□□□ -0.21
PDGFC-204ENST00000504672 CLTCL1P53675 1640 aa13.74□□□□□ -0.21
PDGFC-204ENST00000504672 RPGRIP1LQ68CZ1 1315 aa13.73□□□□□ -0.21
PDGFC-204ENST00000504672 ADGRF5Q8IZF2 1346 aa13.73□□□□□ -0.21
PDGFC-204ENST00000504672 EZH2Q15910 746 aaKnown RBP13.73□□□□□ -0.21
PDGFC-204ENST00000504672 RGL3Q3MIN7 710 aa13.73□□□□□ -0.21
PDGFC-204ENST00000504672 PSME1Q06323 249 aa13.72□□□□□ -0.21
PDGFC-204ENST00000504672 BTG4Q9NY30 223 aa13.72□□□□□ -0.21
PDGFC-204ENST00000504672 PHF8Q9UPP1 1060 aa13.72□□□□□ -0.21
PDGFC-204ENST00000504672 LRP5O75197 1615 aa13.72□□□□□ -0.21
PDGFC-204ENST00000504672 BRWD3Q6RI45 1802 aa13.71□□□□□ -0.21
PDGFC-204ENST00000504672 SPHKAPQ2M3C7 1700 aa13.71□□□□□ -0.21
PDGFC-204ENST00000504672 PMFBP1Q8TBY8 1022 aa13.69□□□□□ -0.22
PDGFC-204ENST00000504672 CCDC144AA2RUR9 1427 aa13.68□□□□□ -0.22
PDGFC-204ENST00000504672 PRAG1Q86YV5 1406 aa13.68□□□□□ -0.22
PDGFC-204ENST00000504672 TRIM37O94972 964 aa13.68□□□□□ -0.22
PDGFC-204ENST00000504672 SAFB2Q14151 953 aaKnown RBP eCLIP13.68□□□□□ -0.22
PDGFC-204ENST00000504672 MARF1Q9Y4F3 1742 aaKnown RBP13.67□□□□□ -0.22
PDGFC-204ENST00000504672 CDC42BPGQ6DT37 1551 aa13.67□□□□□ -0.22
PDGFC-204ENST00000504672 CAMKK2Q96RR4 588 aa13.67□□□□□ -0.22
PDGFC-204ENST00000504672 SLC4A1APQ9BWU0 796 aaKnown RBP13.67□□□□□ -0.22
PDGFC-204ENST00000504672 TNS3Q68CZ2 1445 aa13.65□□□□□ -0.22
PDGFC-204ENST00000504672 USP32Q8NFA0 1604 aa13.65□□□□□ -0.22
PDGFC-204ENST00000504672 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.65□□□□□ -0.22
PDGFC-204ENST00000504672 APBA3O96018 575 aa13.65□□□□□ -0.22
PDGFC-204ENST00000504672 ABCC11Q96J66 1382 aa13.65□□□□□ -0.22
PDGFC-204ENST00000504672 SPATA31A5Q5VU36 1347 aa13.64□□□□□ -0.23
PDGFC-204ENST00000504672 SPATA31A7Q8IWB4 1347 aa13.64□□□□□ -0.23
PDGFC-204ENST00000504672 SBNO1A3KN83 1393 aa13.62□□□□□ -0.23
PDGFC-204ENST00000504672 ARHGEF10O15013 1369 aa13.61□□□□□ -0.23
PDGFC-204ENST00000504672 PRAM1Q96QH2 718 aa13.61□□□□□ -0.23
PDGFC-204ENST00000504672 PPP1R1BQ9UD71 204 aaPredicted RBP13.61□□□□□ -0.23
PDGFC-204ENST00000504672 KIF1BO60333 1816 aa13.61□□□□□ -0.23
PDGFC-204ENST00000504672 TECPR2O15040 1411 aa13.6□□□□□ -0.23
PDGFC-204ENST00000504672 FAM196AQ6ZSG2 479 aa13.6□□□□□ -0.23
PDGFC-204ENST00000504672 STRN4Q9NRL3 753 aa13.6□□□□□ -0.23
PDGFC-204ENST00000504672 USP35Q9P2H5 1018 aa13.6□□□□□ -0.23
PDGFC-204ENST00000504672 YTHDC2Q9H6S0 1430 aaKnown RBP13.59□□□□□ -0.23
PDGFC-204ENST00000504672 RRBP1Q9P2E9 1410 aaKnown RBP13.59□□□□□ -0.23
PDGFC-204ENST00000504672 PAK3O75914 559 aaPredicted RBP13.59□□□□□ -0.23
PDGFC-204ENST00000504672 CHRNA2Q15822 529 aa13.59□□□□□ -0.23
PDGFC-204ENST00000504672 CFAP70Q5T0N1 1121 aa13.59□□□□□ -0.23
PDGFC-204ENST00000504672 HIRIP3Q9BW71 556 aaPredicted RBP13.59□□□□□ -0.23
PDGFC-204ENST00000504672 PRDM11Q9NQV5 511 aa13.59□□□□□ -0.23
PDGFC-204ENST00000504672 DCAF8L1A6NGE4 600 aa13.58□□□□□ -0.24
PDGFC-204ENST00000504672 NBPF8Q3BBV2 869 aa13.58□□□□□ -0.24
PDGFC-204ENST00000504672 NBPF14Q5TI25 921 aa13.58□□□□□ -0.24
PDGFC-204ENST00000504672 SIRT1Q96EB6 747 aa13.58□□□□□ -0.24
PDGFC-204ENST00000504672 POGKQ9P215 609 aa13.58□□□□□ -0.24
PDGFC-204ENST00000504672 PLCH1Q4KWH8 1693 aa13.58□□□□□ -0.24
PDGFC-204ENST00000504672 KCNQ2O43526 872 aa13.56□□□□□ -0.24
PDGFC-204ENST00000504672 C14orf93Q9H972 538 aaKnown RBP13.56□□□□□ -0.24
PDGFC-204ENST00000504672 SPON1Q9HCB6 807 aa13.56□□□□□ -0.24
PDGFC-204ENST00000504672 SPATA31A1Q5TZJ5 1347 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms