RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 ADGRF5Q8IZF2 1346 aa17.62■□□□□ 0.41
MED28-203ENST00000503945 RGS12O14924 1447 aa17.62■□□□□ 0.41
MED28-203ENST00000503945 ANKRD30BQ9BXX2 1392 aa17.61■□□□□ 0.41
MED28-203ENST00000503945 HRCP23327 699 aa17.6■□□□□ 0.41
MED28-203ENST00000503945 STK26Q9P289 416 aa17.6■□□□□ 0.41
MED28-203ENST00000503945 USP21Q9UK80 565 aa17.59■□□□□ 0.41
MED28-203ENST00000503945 RAB3GAP2Q9H2M9 1393 aa17.58■□□□□ 0.4
MED28-203ENST00000503945 PRAG1Q86YV5 1406 aa17.57■□□□□ 0.4
MED28-203ENST00000503945 ESCO1Q5FWF5 840 aa17.57■□□□□ 0.4
MED28-203ENST00000503945 TMEM132EQ6IEE7 984 aa17.57■□□□□ 0.4
MED28-203ENST00000503945 FNBP4Q8N3X1 1017 aaPredicted RBP17.56■□□□□ 0.4
MED28-203ENST00000503945 TRPC5Q9UL62 973 aaPredicted RBP17.56■□□□□ 0.4
MED28-203ENST00000503945 SPATA31E1Q6ZUB1 1445 aa17.55■□□□□ 0.4
MED28-203ENST00000503945 WAPLQ7Z5K2 1190 aa17.55■□□□□ 0.4
MED28-203ENST00000503945 FOXO3O43524 673 aa17.54■□□□□ 0.4
MED28-203ENST00000503945 XPCQ01831 940 aaPredicted RBP17.54■□□□□ 0.4
MED28-203ENST00000503945 C14orf93Q9H972 538 aaKnown RBP17.54■□□□□ 0.4
MED28-203ENST00000503945 NUTM2FA1L443 756 aa17.53■□□□□ 0.4
MED28-203ENST00000503945 COL22A1Q8NFW1 1626 aaPredicted RBP17.53■□□□□ 0.4
MED28-203ENST00000503945 NPHP3Q7Z494 1330 aa17.52■□□□□ 0.4
MED28-203ENST00000503945 SIRT1Q96EB6 747 aa17.51■□□□□ 0.39
MED28-203ENST00000503945 ATRNO75882 1429 aa17.5■□□□□ 0.39
MED28-203ENST00000503945 CFAP70Q5T0N1 1121 aa17.5■□□□□ 0.39
MED28-203ENST00000503945 KDM2AQ9Y2K7 1162 aa17.5■□□□□ 0.39
MED28-203ENST00000503945 ABCC11Q96J66 1382 aa17.5■□□□□ 0.39
MED28-203ENST00000503945 PXDNQ92626 1479 aa17.5■□□□□ 0.39
MED28-203ENST00000503945 CDC42BPGQ6DT37 1551 aa17.49■□□□□ 0.39
MED28-203ENST00000503945 LRPPRCP42704 1394 aaKnown RBP17.49■□□□□ 0.39
MED28-203ENST00000503945 ATAD2Q6PL18 1390 aa17.49■□□□□ 0.39
MED28-203ENST00000503945 MARF1Q9Y4F3 1742 aaKnown RBP17.49■□□□□ 0.39
MED28-203ENST00000503945 MYOM2P54296 1465 aa17.49■□□□□ 0.39
MED28-203ENST00000503945 DCAF11Q8TEB1 546 aa17.48■□□□□ 0.39
MED28-203ENST00000503945 STAC3Q96MF2 364 aa17.48■□□□□ 0.39
MED28-203ENST00000503945 DHX57Q6P158 1386 aaKnown RBP17.48■□□□□ 0.39
MED28-203ENST00000503945 PLEKHH1Q9ULM0 1364 aa17.48■□□□□ 0.39
MED28-203ENST00000503945 BCL9LQ86UU0 1499 aa17.48■□□□□ 0.39
MED28-203ENST00000503945 IFT172Q9UG01 1749 aa17.47■□□□□ 0.39
MED28-203ENST00000503945 TECPR2O15040 1411 aa17.46■□□□□ 0.39
MED28-203ENST00000503945 GJD4Q96KN9 370 aaPredicted RBP17.45■□□□□ 0.38
MED28-203ENST00000503945 PIK3C2GO75747 1445 aa17.45■□□□□ 0.38
MED28-203ENST00000503945 POGKQ9P215 609 aa17.44■□□□□ 0.38
MED28-203ENST00000503945 RGPD8O14715 1765 aaPredicted RBP17.43■□□□□ 0.38
MED28-203ENST00000503945 KRT28Q7Z3Y7 464 aa17.43■□□□□ 0.38
MED28-203ENST00000503945 YTHDC2Q9H6S0 1430 aaKnown RBP17.43■□□□□ 0.38
MED28-203ENST00000503945 SPATA31A3Q5VYP0 1347 aa17.43■□□□□ 0.38
MED28-203ENST00000503945 KNDC1Q76NI1 1749 aa17.42■□□□□ 0.38
MED28-203ENST00000503945 FMN2Q9NZ56 1722 aa17.42■□□□□ 0.38
MED28-203ENST00000503945 SAFB2Q14151 953 aaKnown RBP eCLIP17.41■□□□□ 0.38
MED28-203ENST00000503945 UNC5CLQ8IV45 518 aa17.41■□□□□ 0.38
MED28-203ENST00000503945 PRAM1Q96QH2 718 aa17.41■□□□□ 0.38
MED28-203ENST00000503945 CCDC125Q86Z20 511 aa17.4■□□□□ 0.38
MED28-203ENST00000503945 ZRANB1Q9UGI0 708 aa17.39■□□□□ 0.37
MED28-203ENST00000503945 TRAK1Q9UPV9 953 aa17.39■□□□□ 0.37
MED28-203ENST00000503945 PHF8Q9UPP1 1060 aa17.38■□□□□ 0.37
MED28-203ENST00000503945 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.38■□□□□ 0.37
MED28-203ENST00000503945 SLIT2O94813 1529 aa17.37■□□□□ 0.37
MED28-203ENST00000503945 KIF1AQ12756 1690 aa17.37■□□□□ 0.37
MED28-203ENST00000503945 PLEKHG5O94827 1062 aa17.37■□□□□ 0.37
MED28-203ENST00000503945 CABLES1Q8TDN4 633 aa17.37■□□□□ 0.37
MED28-203ENST00000503945 GLI3P10071 1580 aa17.36■□□□□ 0.37
MED28-203ENST00000503945 BRWD3Q6RI45 1802 aa17.36■□□□□ 0.37
MED28-203ENST00000503945 PSME1Q06323 249 aa17.36■□□□□ 0.37
MED28-203ENST00000503945 RALGAPBQ86X10 1494 aa17.36■□□□□ 0.37
MED28-203ENST00000503945 NRXN1Q9ULB1 1477 aa17.36■□□□□ 0.37
MED28-203ENST00000503945 EP400Q96L91 3159 aa17.36■□□□□ 0.37
MED28-203ENST00000503945 HAP1P54257 671 aaPredicted RBP17.33■□□□□ 0.36
MED28-203ENST00000503945 LMOD2Q6P5Q4 547 aa17.33■□□□□ 0.36
MED28-203ENST00000503945 USP32Q8NFA0 1604 aa17.32■□□□□ 0.36
MED28-203ENST00000503945 SEPT12Q8IYM1 358 aa17.32■□□□□ 0.36
MED28-203ENST00000503945 PMFBP1Q8TBY8 1022 aa17.32■□□□□ 0.36
MED28-203ENST00000503945 TNS3Q68CZ2 1445 aa17.31■□□□□ 0.36
MED28-203ENST00000503945 FAM83GA6ND36 823 aa17.31■□□□□ 0.36
MED28-203ENST00000503945 VPS72Q15906 364 aa17.31■□□□□ 0.36
MED28-203ENST00000503945 HIRIP3Q9BW71 556 aaPredicted RBP17.31■□□□□ 0.36
MED28-203ENST00000503945 SRCAPQ6ZRS2 3230 aa17.3■□□□□ 0.36
MED28-203ENST00000503945 SBNO1A3KN83 1393 aa17.3■□□□□ 0.36
MED28-203ENST00000503945 ONECUT3O60422 494 aaPredicted RBP17.3■□□□□ 0.36
MED28-203ENST00000503945 DEFB132Q7Z7B7 95 aa17.3■□□□□ 0.36
MED28-203ENST00000503945 MINK1Q8N4C8 1332 aaPredicted RBP17.29■□□□□ 0.36
MED28-203ENST00000503945 CCDC9Q9Y3X0 531 aaKnown RBP17.29■□□□□ 0.36
MED28-203ENST00000503945 BLMP54132 1417 aaPredicted RBP17.29■□□□□ 0.36
MED28-203ENST00000503945 WASLO00401 505 aaPredicted RBP17.28■□□□□ 0.36
MED28-203ENST00000503945 PLCH1Q4KWH8 1693 aa17.27■□□□□ 0.36
MED28-203ENST00000503945 NWD2Q9ULI1 1742 aa17.27■□□□□ 0.35
MED28-203ENST00000503945 KRT27Q7Z3Y8 459 aa17.26■□□□□ 0.35
MED28-203ENST00000503945 ABCA3Q99758 1704 aa17.26■□□□□ 0.35
MED28-203ENST00000503945 ARHGEF10O15013 1369 aa17.26■□□□□ 0.35
MED28-203ENST00000503945 DLC1Q96QB1 1528 aa17.25■□□□□ 0.35
MED28-203ENST00000503945 SF3B2Q13435 895 aaKnown RBP17.24■□□□□ 0.35
MED28-203ENST00000503945 NGDNQ8NEJ9 315 aaKnown RBP17.24■□□□□ 0.35
MED28-203ENST00000503945 ANKARQ7Z5J8 1434 aa17.23■□□□□ 0.35
MED28-203ENST00000503945 PRR36Q9H6K5 1346 aa17.22■□□□□ 0.35
MED28-203ENST00000503945 TRPM3Q9HCF6 1732 aaPredicted RBP17.22■□□□□ 0.35
MED28-203ENST00000503945 NEUROD1Q13562 356 aa17.22■□□□□ 0.35
MED28-203ENST00000503945 NBPF1Q3BBV0 1214 aa17.22■□□□□ 0.35
MED28-203ENST00000503945 BTG4Q9NY30 223 aa17.22■□□□□ 0.35
MED28-203ENST00000503945 EIF3AQ14152 1382 aaKnown RBP17.22■□□□□ 0.35
MED28-203ENST00000503945 ADGRB1O14514 1584 aa17.22■□□□□ 0.35
MED28-203ENST00000503945 GPRASP1Q5JY77 1395 aa17.21■□□□□ 0.35
MED28-203ENST00000503945 FAM98CQ17RN3 349 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms