RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PTPRMP28827 1452 aa21.15■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 ZBTB47Q9UFB7 747 aaPredicted RBP21.14■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 NRXN1Q9ULB1 1477 aa21.14■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 STAG3Q9UJ98 1225 aa21.13■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 GOLGA2Q08379 1002 aa21.13■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 MYO3AQ8NEV4 1616 aa21.12■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 TNRQ92752 1358 aa21.12■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 SLFN5Q08AF3 891 aa21.11■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 CARD14Q9BXL6 1004 aa21.11■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 SPATA31D1Q6ZQQ2 1576 aa21.11■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 SKAP1Q86WV1 359 aa21.1■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 TRMT2AQ8IZ69 625 aaKnown RBP21.1■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 PIK3C2BO00750 1634 aa21.1■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 KDM2BQ8NHM5 1336 aa21.1■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 SLC24A1O60721 1099 aa21.09■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 NBR1Q14596 966 aa21.09■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 CCDC146Q8IYE0 955 aa21.08■□□□□ 0.97
MSH5-SAPCD1-208ENST00000498473 ADGRB3O60242 1522 aa21.07■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 NPM2Q86SE8 214 aaKnown RBP21.07■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 SBNO2Q9Y2G9 1366 aa21.06■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 ANO8Q9HCE9 1232 aaPredicted RBP21.06■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 SPINK5Q9NQ38 1064 aaPredicted RBP21.06■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 SETBP1Q9Y6X0 1596 aa21.05■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 APAF1O14727 1248 aa21.05■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 DEKP35659 375 aaKnown RBP21.05■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 SLC52A1Q9NWF4 448 aa21.03■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 PPLO60437 1756 aa21.03■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 TMEM131LA2VDJ0 1609 aa21.02■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 HSPA2P54652 639 aa21.02■□□□□ 0.96
MSH5-SAPCD1-208ENST00000498473 CENPQQ7L2Z9 268 aaPredicted RBP21.01■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 NKTRP30414 1462 aaKnown RBP21■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 GOLGA6L2Q8N9W4 650 aaPredicted RBP21■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 CENPJQ9HC77 1338 aaPredicted RBP20.99■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 UBE2Q2Q8WVN8 375 aa20.98■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 DMRT2Q9Y5R5 561 aa20.98■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 POLR3AO14802 1390 aaPredicted RBP20.98■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 ADGRB1O14514 1584 aa20.98■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 UBR1Q8IWV7 1749 aa20.98■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 A2ML1A8K2U0 1454 aa20.98■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 QRICH2Q9H0J4 1663 aa20.98■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 SHPRHQ149N8 1683 aa20.97■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 C14orf93Q9H972 538 aaKnown RBP20.97■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 SETD1BQ9UPS6 1966 aaKnown RBP20.96■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 E9PSI1 815 aa20.96■□□□□ 0.95
MSH5-SAPCD1-208ENST00000498473 NGEFQ8N5V2 710 aa20.95■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 BCAR3O75815 825 aa20.94■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 LTKP29376 864 aa20.94■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 NSD3Q9BZ95 1437 aa20.94■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 TRAK1Q9UPV9 953 aa20.94■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 CEP170BQ9Y4F5 1589 aaPredicted RBP20.94■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 NEXMIFQ5QGS0 1516 aa20.92■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 SLC12A5Q9H2X9 1139 aa20.92■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 USP32Q8NFA0 1604 aa20.9■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 TMEM132EQ6IEE7 984 aa20.9■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 WWC1Q8IX03 1113 aa20.9■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 RIMS2Q9UQ26 1411 aa20.9■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 NLRP1Q9C000 1473 aa20.9■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 RPGRIP1LQ68CZ1 1315 aa20.89■□□□□ 0.94
MSH5-SAPCD1-208ENST00000498473 MORC1Q86VD1 984 aa20.89■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 TXNDC2Q86VQ3 553 aa20.89■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 C8orf34Q49A92 452 aa20.88■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 RTL5Q5HYW3 569 aaPredicted RBP20.88■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 TMEM2Q9UHN6 1383 aa20.87■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 SLC26A8Q96RN1 970 aa20.87■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 FAM161AQ3B820 660 aa20.86■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 LAS1LQ9Y4W2 734 aaKnown RBP20.86■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 IQSEC2Q5JU85 1478 aa20.86■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 NCKAP5LQ9HCH0 1330 aa20.86■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 DDRGK1Q96HY6 314 aa20.86■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 THEMISQ8N1K5 641 aaPredicted RBP20.85■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 ARHGEF28Q8N1W1 1705 aaKnown RBP20.85■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 ZFYVE9O95405 1425 aa20.84■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 TNNT2P45379 298 aaPredicted RBP20.84■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 PDE3AQ14432 1141 aa20.84■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 RUNDC1Q96C34 613 aa20.84■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 PHF23Q9BUL5 403 aaPredicted RBP20.84■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 TULP4Q9NRJ4 1543 aa20.83■□□□□ 0.93
MSH5-SAPCD1-208ENST00000498473 ZNF142P52746 1687 aaPredicted RBP20.82■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 IGHDP01880 384 aa20.82■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 LMTK3Q96Q04 1460 aa20.81■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 VGFO15240 615 aaPredicted RBP20.81■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 PUS7Q96PZ0 661 aaKnown RBP20.81■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 STK26Q9P289 416 aa20.81■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 NINLQ9Y2I6 1382 aa20.81■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 CGNL1Q0VF96 1302 aa20.8■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 RGS3P49796 1198 aa20.8■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 MTHFSP49914 203 aa20.8■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 TCP11L2Q8N4U5 519 aa20.8■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 RRP7AQ9Y3A4 280 aaKnown RBP20.8■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 PPM1GO15355 546 aaPredicted RBP20.79■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 NEFMP07197 916 aa20.78■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 USP35Q9P2H5 1018 aa20.78■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 EID1Q9Y6B2 187 aa20.78■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 NEUROD2Q15784 382 aa20.78■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 PANK1Q8TE04 598 aa20.78■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 ANKRD36BQ8N2N9 1353 aa20.77■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 VIRMAQ69YN4 1812 aaKnown RBP20.77■□□□□ 0.92
MSH5-SAPCD1-208ENST00000498473 SAFB2Q14151 953 aaKnown RBP eCLIP20.77■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 EVC2Q86UK5 1308 aa20.77■□□□□ 0.91
MSH5-SAPCD1-208ENST00000498473 RARSP54136 660 aaKnown RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms