RNA–Protein interactions for RNA: ENST00000498463.5

SNX13-212, Transcript of sorting nexin 13, humanhuman

TSL 3

Gene SNX13, Length 687 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-212ENST00000498463 VRTNQ9H8Y1 702 aa13.59□□□□□ -0.23
SNX13-212ENST00000498463 TMEM88BA6NKF7 163 aa13.58□□□□□ -0.24
SNX13-212ENST00000498463 ATG7O95352 703 aa13.58□□□□□ -0.24
SNX13-212ENST00000498463 MTMR2Q13614 643 aa13.58□□□□□ -0.24
SNX13-212ENST00000498463 HLA-CQ95604 372 aa13.58□□□□□ -0.24
SNX13-212ENST00000498463 SOX11P35716 441 aa13.57□□□□□ -0.24
SNX13-212ENST00000498463 DOK7Q18PE1 504 aa13.57□□□□□ -0.24
SNX13-212ENST00000498463 PRR7Q8TB68 274 aa13.57□□□□□ -0.24
SNX13-212ENST00000498463 TSC1Q92574 1164 aa13.57□□□□□ -0.24
SNX13-212ENST00000498463 AMOTL2Q9Y2J4 779 aa13.57□□□□□ -0.24
SNX13-212ENST00000498463 SMAPO00193 183 aa13.56□□□□□ -0.24
SNX13-212ENST00000498463 PTPREP23469 700 aa13.56□□□□□ -0.24
SNX13-212ENST00000498463 MAFBQ9Y5Q3 323 aaPredicted RBP13.56□□□□□ -0.24
SNX13-212ENST00000498463 CFAP99D6REC4 459 aa13.55□□□□□ -0.24
SNX13-212ENST00000498463 IGSF3O75054 1194 aa13.55□□□□□ -0.24
SNX13-212ENST00000498463 EPS8L1Q8TE68 723 aa13.55□□□□□ -0.24
SNX13-212ENST00000498463 LHX6Q9UPM6 363 aa13.55□□□□□ -0.24
SNX13-212ENST00000498463 CDCA8Q53HL2 280 aa13.54□□□□□ -0.24
SNX13-212ENST00000498463 RSPH4AQ5TD94 716 aa13.54□□□□□ -0.24
SNX13-212ENST00000498463 ZSWIM6Q9HCJ5 1215 aa13.54□□□□□ -0.24
SNX13-212ENST00000498463 HOXB3P14651 431 aaPredicted RBP13.53□□□□□ -0.24
SNX13-212ENST00000498463 GPR153Q6NV75 609 aa13.53□□□□□ -0.24
SNX13-212ENST00000498463 RIMBP2O15034 1052 aa13.51□□□□□ -0.25
SNX13-212ENST00000498463 LOC105371045A0A1W2PR82 267 aa13.5□□□□□ -0.25
SNX13-212ENST00000498463 PSDA5PKW4 1024 aaPredicted RBP13.5□□□□□ -0.25
SNX13-212ENST00000498463 SLC10A3P09131 477 aa13.5□□□□□ -0.25
SNX13-212ENST00000498463 SEMA3FQ13275 785 aa13.5□□□□□ -0.25
SNX13-212ENST00000498463 TBC1D9Q6ZT07 1266 aa13.49□□□□□ -0.25
SNX13-212ENST00000498463 PROX2Q3B8N5 592 aa13.48□□□□□ -0.25
SNX13-212ENST00000498463 GNEQ9Y223 722 aaKnown RBP13.48□□□□□ -0.25
SNX13-212ENST00000498463 C6orf229H3BNL8 230 aa13.47□□□□□ -0.25
SNX13-212ENST00000498463 SLF2Q8IX21 1173 aa13.47□□□□□ -0.25
SNX13-212ENST00000498463 NR6A1Q15406 480 aa13.46□□□□□ -0.25
SNX13-212ENST00000498463 B4GALNT3Q6L9W6 998 aa13.46□□□□□ -0.25
SNX13-212ENST00000498463 ATP9BO43861 1147 aa13.45□□□□□ -0.26
SNX13-212ENST00000498463 SWT1Q5T5J6 900 aaKnown RBP13.44□□□□□ -0.26
SNX13-212ENST00000498463 PNMA1Q8ND90 353 aa13.43□□□□□ -0.26
SNX13-212ENST00000498463 POTEIP0CG38 1075 aa13.42□□□□□ -0.26
SNX13-212ENST00000498463 EIF4G2P78344 907 aaKnown RBP eCLIP13.42□□□□□ -0.26
SNX13-212ENST00000498463 PER1O15534 1290 aaPredicted RBP13.4□□□□□ -0.26
SNX13-212ENST00000498463 FUT2Q10981 343 aa13.4□□□□□ -0.26
SNX13-212ENST00000498463 ELOAQ14241 798 aaKnown RBP13.4□□□□□ -0.26
SNX13-212ENST00000498463 GRIPAP1Q4V328 841 aa13.4□□□□□ -0.26
SNX13-212ENST00000498463 KANK4Q5T7N3 995 aaPredicted RBP13.4□□□□□ -0.26
SNX13-212ENST00000498463 MYT1LQ9UL68 1186 aa13.4□□□□□ -0.26
SNX13-212ENST00000498463 KIAA1468Q9P260 1216 aa13.39□□□□□ -0.27
SNX13-212ENST00000498463 ZMIZ1Q9ULJ6 1067 aa13.39□□□□□ -0.27
SNX13-212ENST00000498463 SYMPKQ92797 1274 aaKnown RBP13.38□□□□□ -0.27
SNX13-212ENST00000498463 KCNK17Q96T54 332 aa13.38□□□□□ -0.27
SNX13-212ENST00000498463 TMEM164Q5U3C3 297 aa13.37□□□□□ -0.27
SNX13-212ENST00000498463 STK32AQ8WU08 396 aa13.37□□□□□ -0.27
SNX13-212ENST00000498463 PIK3CDO00329 1044 aa13.35□□□□□ -0.27
SNX13-212ENST00000498463 NR1H3Q13133 447 aa13.35□□□□□ -0.27
SNX13-212ENST00000498463 CCER1Q8TC90 406 aaPredicted RBP13.35□□□□□ -0.27
SNX13-212ENST00000498463 UNCXA6NJT0 531 aa13.34□□□□□ -0.27
SNX13-212ENST00000498463 TXNDC2Q86VQ3 553 aa13.34□□□□□ -0.27
SNX13-212ENST00000498463 CFHP08603 1231 aa13.33□□□□□ -0.28
SNX13-212ENST00000498463 NFATC2IPQ8NCF5 419 aa13.33□□□□□ -0.28
SNX13-212ENST00000498463 NOVA2Q9UNW9 492 aaKnown RBP13.33□□□□□ -0.28
SNX13-212ENST00000498463 USP17L3A6NCW0 530 aa13.32□□□□□ -0.28
SNX13-212ENST00000498463 USP17L4A6NCW7 530 aa13.32□□□□□ -0.28
SNX13-212ENST00000498463 FBXO45P0C2W1 286 aa13.32□□□□□ -0.28
SNX13-212ENST00000498463 PHLDB3Q6NSJ2 640 aa13.32□□□□□ -0.28
SNX13-212ENST00000498463 USP17L2Q6R6M4 530 aa13.32□□□□□ -0.28
SNX13-212ENST00000498463 USP17L1Q7RTZ2 530 aa13.32□□□□□ -0.28
SNX13-212ENST00000498463 ZBED2Q9BTP6 218 aa13.32□□□□□ -0.28
SNX13-212ENST00000498463 ATP6V1AP38606 617 aa13.31□□□□□ -0.28
SNX13-212ENST00000498463 SLC4A3P48751 1232 aa13.31□□□□□ -0.28
SNX13-212ENST00000498463 RETREG3Q86VR2 466 aa13.31□□□□□ -0.28
SNX13-212ENST00000498463 RBM47A0AV96 593 aaKnown RBP13.3□□□□□ -0.28
SNX13-212ENST00000498463 KCNH8Q96L42 1107 aa13.3□□□□□ -0.28
SNX13-212ENST00000498463 SEPT9Q9UHD8 586 aaPredicted RBP13.3□□□□□ -0.28
SNX13-212ENST00000498463 DESI1Q6ICB0 168 aa13.29□□□□□ -0.28
SNX13-212ENST00000498463 SHROOM4Q9ULL8 1493 aa13.29□□□□□ -0.28
SNX13-212ENST00000498463 USP17L5A8MUK1 530 aa13.28□□□□□ -0.28
SNX13-212ENST00000498463 HDGFP51858 240 aaKnown RBP13.28□□□□□ -0.28
SNX13-212ENST00000498463 PLEKHM2Q8IWE5 1019 aa13.28□□□□□ -0.28
SNX13-212ENST00000498463 ZBBXA8MT70 800 aa13.27□□□□□ -0.29
SNX13-212ENST00000498463 RABGEF1Q9UJ41 708 aa13.27□□□□□ -0.29
SNX13-212ENST00000498463 SKIP12755 728 aa13.26□□□□□ -0.29
SNX13-212ENST00000498463 FAM196BA6NMK8 535 aa13.25□□□□□ -0.29
SNX13-212ENST00000498463 LYPD8Q6UX82 237 aa13.25□□□□□ -0.29
SNX13-212ENST00000498463 USP17L15C9J2P7 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L10C9JJH3 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L13C9JLJ4 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L12C9JPN9 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L11C9JVI0 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L21D6R901 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L18D6R9N7 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L22D6RA61 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L17D6RBQ6 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L19D6RCP7 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L20D6RJB6 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 SSFA2P28290 1259 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 USP17L24Q0WX57 530 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 DNAJC14Q6Y2X3 702 aaPredicted RBP13.24□□□□□ -0.29
SNX13-212ENST00000498463 FAM174AQ8TBP5 190 aa13.24□□□□□ -0.29
SNX13-212ENST00000498463 ARID4AP29374 1257 aaPredicted RBP13.23□□□□□ -0.29
SNX13-212ENST00000498463 FAM98CQ17RN3 349 aaKnown RBP13.23□□□□□ -0.29
SNX13-212ENST00000498463 CRTC2Q53ET0 693 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms