RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 METP08581 1390 aa28.54■■■□□ 2.16
CTSD-206ENST00000497544 ATAD2Q6PL18 1390 aa28.54■■■□□ 2.16
CTSD-206ENST00000497544 PIK3R4Q99570 1358 aa28.54■■■□□ 2.16
CTSD-206ENST00000497544 QTRT2Q9H974 415 aaKnown RBP28.54■■■□□ 2.16
CTSD-206ENST00000497544 LAMC1P11047 1609 aa28.54■■■□□ 2.16
CTSD-206ENST00000497544 AMOTL2Q9Y2J4 779 aa28.52■■■□□ 2.16
CTSD-206ENST00000497544 KIAA1210Q9ULL0 1709 aa28.5■■■□□ 2.15
CTSD-206ENST00000497544 NBPF1Q3BBV0 1214 aa28.5■■■□□ 2.15
CTSD-206ENST00000497544 NCOA3Q9Y6Q9 1424 aa28.5■■■□□ 2.15
CTSD-206ENST00000497544 STK26Q9P289 416 aa28.49■■■□□ 2.15
CTSD-206ENST00000497544 EP400Q96L91 3159 aa28.48■■■□□ 2.15
CTSD-206ENST00000497544 PTPRUQ92729 1446 aa28.46■■■□□ 2.15
CTSD-206ENST00000497544 C8orf37Q96NL8 207 aa28.46■■■□□ 2.15
CTSD-206ENST00000497544 ROCK2O75116 1388 aaKnown RBP28.46■■■□□ 2.15
CTSD-206ENST00000497544 TRPM1Q7Z4N2 1603 aa28.45■■■□□ 2.14
CTSD-206ENST00000497544 CADPS2Q86UW7 1296 aa28.45■■■□□ 2.14
CTSD-206ENST00000497544 BRINP3Q76B58 766 aa28.44■■■□□ 2.14
CTSD-206ENST00000497544 C14orf37Q86TY3 774 aa28.44■■■□□ 2.14
CTSD-206ENST00000497544 LRPPRCP42704 1394 aaKnown RBP28.44■■■□□ 2.14
CTSD-206ENST00000497544 YTHDC2Q9H6S0 1430 aaKnown RBP28.43■■■□□ 2.14
CTSD-206ENST00000497544 NHSL1Q5SYE7 1610 aa28.43■■■□□ 2.14
CTSD-206ENST00000497544 ZEB1P37275 1124 aaPredicted RBP28.43■■■□□ 2.14
CTSD-206ENST00000497544 ASXL1Q8IXJ9 1541 aa28.42■■■□□ 2.14
CTSD-206ENST00000497544 ABCC11Q96J66 1382 aa28.41■■■□□ 2.14
CTSD-206ENST00000497544 CARD11Q9BXL7 1154 aa28.41■■■□□ 2.14
CTSD-206ENST00000497544 TRAK1Q9UPV9 953 aa28.41■■■□□ 2.14
CTSD-206ENST00000497544 ADGRB1O14514 1584 aa28.41■■■□□ 2.14
CTSD-206ENST00000497544 ATF3P18847 181 aa28.4■■■□□ 2.14
CTSD-206ENST00000497544 RALGAPBQ86X10 1494 aa28.4■■■□□ 2.14
CTSD-206ENST00000497544 C19orf44Q9H6X5 657 aa28.39■■■□□ 2.14
CTSD-206ENST00000497544 NGLY1Q96IV0 654 aa28.38■■■□□ 2.13
CTSD-206ENST00000497544 LRP5O75197 1615 aa28.36■■■□□ 2.13
CTSD-206ENST00000497544 SIRT1Q96EB6 747 aa28.35■■■□□ 2.13
CTSD-206ENST00000497544 GPRASP1Q5JY77 1395 aa28.35■■■□□ 2.13
CTSD-206ENST00000497544 XRN1Q8IZH2 1706 aaKnown RBP28.35■■■□□ 2.13
CTSD-206ENST00000497544 POGKQ9P215 609 aa28.33■■■□□ 2.13
CTSD-206ENST00000497544 PNPLA6Q8IY17 1366 aa28.32■■■□□ 2.12
CTSD-206ENST00000497544 ROBO2Q9HCK4 1378 aa28.32■■■□□ 2.12
CTSD-206ENST00000497544 TECPR2O15040 1411 aa28.32■■■□□ 2.12
CTSD-206ENST00000497544 WAPLQ7Z5K2 1190 aa28.31■■■□□ 2.12
CTSD-206ENST00000497544 KNDC1Q76NI1 1749 aa28.3■■■□□ 2.12
CTSD-206ENST00000497544 PRAM1Q96QH2 718 aa28.3■■■□□ 2.12
CTSD-206ENST00000497544 PTCH1Q13635 1447 aa28.29■■■□□ 2.12
CTSD-206ENST00000497544 DLC1Q96QB1 1528 aa28.28■■■□□ 2.12
CTSD-206ENST00000497544 LRRC59Q96AG4 307 aaKnown RBP28.28■■■□□ 2.12
CTSD-206ENST00000497544 SAFB2Q14151 953 aaKnown RBP eCLIP28.27■■■□□ 2.12
CTSD-206ENST00000497544 CCDC125Q86Z20 511 aa28.26■■■□□ 2.11
CTSD-206ENST00000497544 EIF3AQ14152 1382 aaKnown RBP28.24■■■□□ 2.11
CTSD-206ENST00000497544 ADAMTS2O95450 1211 aa28.24■■■□□ 2.11
CTSD-206ENST00000497544 DCCP43146 1447 aa28.24■■■□□ 2.11
CTSD-206ENST00000497544 PLEKHH1Q9ULM0 1364 aa28.24■■■□□ 2.11
CTSD-206ENST00000497544 MST1RQ04912 1400 aa28.23■■■□□ 2.11
CTSD-206ENST00000497544 CENPJQ9HC77 1338 aaPredicted RBP28.22■■■□□ 2.11
CTSD-206ENST00000497544 ARHGEF28Q8N1W1 1705 aaKnown RBP28.22■■■□□ 2.11
CTSD-206ENST00000497544 DDX17Q92841 729 aaKnown RBP28.21■■■□□ 2.11
CTSD-206ENST00000497544 USP21Q9UK80 565 aa28.21■■■□□ 2.11
CTSD-206ENST00000497544 TRPC5Q9UL62 973 aaPredicted RBP28.21■■■□□ 2.11
CTSD-206ENST00000497544 ATRNO75882 1429 aa28.2■■■□□ 2.11
CTSD-206ENST00000497544 EIF4G2P78344 907 aaKnown RBP eCLIP28.18■■■□□ 2.1
CTSD-206ENST00000497544 USP47Q96K76 1375 aa28.18■■■□□ 2.1
CTSD-206ENST00000497544 MINK1Q8N4C8 1332 aaPredicted RBP28.18■■■□□ 2.1
CTSD-206ENST00000497544 ST20-MTHFSA0A0A6YYL1 179 aa28.16■■■□□ 2.1
CTSD-206ENST00000497544 ADGRL3Q9HAR2 1447 aa28.13■■■□□ 2.09
CTSD-206ENST00000497544 HIRIP3Q9BW71 556 aaPredicted RBP28.13■■■□□ 2.09
CTSD-206ENST00000497544 FNBP4Q8N3X1 1017 aaPredicted RBP28.12■■■□□ 2.09
CTSD-206ENST00000497544 HSPA5P11021 654 aaKnown RBP28.1■■■□□ 2.09
CTSD-206ENST00000497544 BLMP54132 1417 aaPredicted RBP28.09■■■□□ 2.09
CTSD-206ENST00000497544 SLC24A1O60721 1099 aa28.09■■■□□ 2.09
CTSD-206ENST00000497544 QRICH2Q9H0J4 1663 aa28.09■■■□□ 2.09
CTSD-206ENST00000497544 NALCNQ8IZF0 1738 aa28.09■■■□□ 2.09
CTSD-206ENST00000497544 DEFB132Q7Z7B7 95 aa28.07■■■□□ 2.08
CTSD-206ENST00000497544 WASLO00401 505 aaPredicted RBP28.06■■■□□ 2.08
CTSD-206ENST00000497544 EVC2Q86UK5 1308 aa28.05■■■□□ 2.08
CTSD-206ENST00000497544 CDK19Q9BWU1 502 aa28.04■■■□□ 2.08
CTSD-206ENST00000497544 TESK2Q96S53 571 aa28.03■■■□□ 2.08
CTSD-206ENST00000497544 BRWD3Q6RI45 1802 aa28.03■■■□□ 2.08
CTSD-206ENST00000497544 MARF1Q9Y4F3 1742 aaKnown RBP28.03■■■□□ 2.08
CTSD-206ENST00000497544 SBNO2Q9Y2G9 1366 aa28.02■■■□□ 2.08
CTSD-206ENST00000497544 NUTM2FA1L443 756 aa28.02■■■□□ 2.08
CTSD-206ENST00000497544 COL22A1Q8NFW1 1626 aaPredicted RBP28.02■■■□□ 2.08
CTSD-206ENST00000497544 BCL9LQ86UU0 1499 aa28.02■■■□□ 2.08
CTSD-206ENST00000497544 ADGRB2O60241 1585 aa28■■■□□ 2.07
CTSD-206ENST00000497544 SRPK2P78362 688 aaKnown RBP28■■■□□ 2.07
CTSD-206ENST00000497544 TMF1P82094 1093 aa28■■■□□ 2.07
CTSD-206ENST00000497544 CDC42BPGQ6DT37 1551 aa27.99■■■□□ 2.07
CTSD-206ENST00000497544 PSDA5PKW4 1024 aaPredicted RBP27.96■■■□□ 2.07
CTSD-206ENST00000497544 CABP2Q9NPB3 220 aa27.96■■■□□ 2.07
CTSD-206ENST00000497544 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.95■■■□□ 2.07
CTSD-206ENST00000497544 GJD4Q96KN9 370 aaPredicted RBP27.95■■■□□ 2.06
CTSD-206ENST00000497544 GLI3P10071 1580 aa27.94■■■□□ 2.06
CTSD-206ENST00000497544 SOS2Q07890 1332 aaPredicted RBP27.94■■■□□ 2.06
CTSD-206ENST00000497544 FMN2Q9NZ56 1722 aa27.94■■■□□ 2.06
CTSD-206ENST00000497544 C1orf167Q5SNV9 1468 aa27.94■■■□□ 2.06
CTSD-206ENST00000497544 CDCA8Q53HL2 280 aa27.93■■■□□ 2.06
CTSD-206ENST00000497544 NUDT16Q96DE0 195 aaKnown RBP27.93■■■□□ 2.06
CTSD-206ENST00000497544 TULP4Q9NRJ4 1543 aa27.92■■■□□ 2.06
CTSD-206ENST00000497544 ESCO1Q5FWF5 840 aa27.91■■■□□ 2.06
CTSD-206ENST00000497544 PUS7Q96PZ0 661 aaKnown RBP27.9■■■□□ 2.06
CTSD-206ENST00000497544 ANKARQ7Z5J8 1434 aa27.9■■■□□ 2.06
CTSD-206ENST00000497544 SF3B2Q13435 895 aaKnown RBP27.89■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms