RNA–Protein interactions for RNA: ENST00000497470.1

SCAMP3-209, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 5

Gene SCAMP3, Length 845 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-209ENST00000497470 DCCP43146 1447 aa27.68■■■□□ 2.02
SCAMP3-209ENST00000497470 ADGRL3Q9HAR2 1447 aa27.68■■■□□ 2.02
SCAMP3-209ENST00000497470 PLEKHH1Q9ULM0 1364 aa27.67■■■□□ 2.02
SCAMP3-209ENST00000497470 QRICH2Q9H0J4 1663 aa27.66■■■□□ 2.02
SCAMP3-209ENST00000497470 TMEM94Q12767 1356 aa27.66■■■□□ 2.02
SCAMP3-209ENST00000497470 CDCA8Q53HL2 280 aa27.66■■■□□ 2.02
SCAMP3-209ENST00000497470 C19orf44Q9H6X5 657 aa27.66■■■□□ 2.02
SCAMP3-209ENST00000497470 IQSEC2Q5JU85 1478 aa27.65■■■□□ 2.02
SCAMP3-209ENST00000497470 TMF1P82094 1093 aa27.64■■■□□ 2.02
SCAMP3-209ENST00000497470 EVC2Q86UK5 1308 aa27.64■■■□□ 2.01
SCAMP3-209ENST00000497470 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.63■■■□□ 2.01
SCAMP3-209ENST00000497470 CDC42BPGQ6DT37 1551 aa27.62■■■□□ 2.01
SCAMP3-209ENST00000497470 WASLO00401 505 aaPredicted RBP27.59■■■□□ 2.01
SCAMP3-209ENST00000497470 MSH6P52701 1360 aa27.57■■■□□ 2
SCAMP3-209ENST00000497470 NALCNQ8IZF0 1738 aa27.56■■■□□ 2
SCAMP3-209ENST00000497470 MINK1Q8N4C8 1332 aaPredicted RBP27.56■■■□□ 2
SCAMP3-209ENST00000497470 ANKARQ7Z5J8 1434 aa27.56■■■□□ 2
SCAMP3-209ENST00000497470 XIRP1Q702N8 1843 aaKnown RBP27.55■■■□□ 2
SCAMP3-209ENST00000497470 SAFB2Q14151 953 aaKnown RBP eCLIP27.55■■■□□ 2
SCAMP3-209ENST00000497470 CADPS2Q86UW7 1296 aa27.55■■■□□ 2
SCAMP3-209ENST00000497470 TULP4Q9NRJ4 1543 aa27.55■■■□□ 2
SCAMP3-209ENST00000497470 ATAD2Q6PL18 1390 aa27.53■■■□□ 2
SCAMP3-209ENST00000497470 NINLQ9Y2I6 1382 aa27.52■■■□□ 2
SCAMP3-209ENST00000497470 CDK19Q9BWU1 502 aa27.52■■■□□ 2
SCAMP3-209ENST00000497470 C14orf37Q86TY3 774 aa27.51■■□□□ 1.99
SCAMP3-209ENST00000497470 DISP3Q9P2K9 1392 aa27.49■■□□□ 1.99
SCAMP3-209ENST00000497470 ZNF316A6NFI3 1004 aaPredicted RBP27.49■■□□□ 1.99
SCAMP3-209ENST00000497470 ATF3P18847 181 aa27.49■■□□□ 1.99
SCAMP3-209ENST00000497470 FMN2Q9NZ56 1722 aa27.49■■□□□ 1.99
SCAMP3-209ENST00000497470 HIRIP3Q9BW71 556 aaPredicted RBP27.47■■□□□ 1.99
SCAMP3-209ENST00000497470 CCDC61Q9Y6R9 512 aa27.47■■□□□ 1.99
SCAMP3-209ENST00000497470 SRPK2P78362 688 aaKnown RBP27.45■■□□□ 1.98
SCAMP3-209ENST00000497470 CCDC7Q96M83 1385 aa27.45■■□□□ 1.98
SCAMP3-209ENST00000497470 ATP7BP35670 1465 aa27.44■■□□□ 1.98
SCAMP3-209ENST00000497470 KIF7Q2M1P5 1343 aa27.43■■□□□ 1.98
SCAMP3-209ENST00000497470 C11orf95C9JLR9 678 aaPredicted RBP27.43■■□□□ 1.98
SCAMP3-209ENST00000497470 RBM33Q96EV2 1170 aaKnown RBP27.43■■□□□ 1.98
SCAMP3-209ENST00000497470 MST1RQ04912 1400 aa27.42■■□□□ 1.98
SCAMP3-209ENST00000497470 CERKQ8TCT0 537 aa27.42■■□□□ 1.98
SCAMP3-209ENST00000497470 NUDT16Q96DE0 195 aaKnown RBP27.42■■□□□ 1.98
SCAMP3-209ENST00000497470 PLEKHG3A1L390 1219 aa27.41■■□□□ 1.98
SCAMP3-209ENST00000497470 WASHC2AQ641Q2 1341 aa27.41■■□□□ 1.98
SCAMP3-209ENST00000497470 CABP2Q9NPB3 220 aa27.4■■□□□ 1.98
SCAMP3-209ENST00000497470 C1orf167Q5SNV9 1468 aa27.39■■□□□ 1.98
SCAMP3-209ENST00000497470 PRR36Q9H6K5 1346 aa27.39■■□□□ 1.97
SCAMP3-209ENST00000497470 ITSN1Q15811 1721 aa27.38■■□□□ 1.97
SCAMP3-209ENST00000497470 USP32Q8NFA0 1604 aa27.38■■□□□ 1.97
SCAMP3-209ENST00000497470 SLAIN2Q9P270 581 aa27.37■■□□□ 1.97
SCAMP3-209ENST00000497470 TOPAZ1Q8N9V7 1692 aa27.36■■□□□ 1.97
SCAMP3-209ENST00000497470 TOM1O60784 492 aa27.36■■□□□ 1.97
SCAMP3-209ENST00000497470 BRD4O60885 1362 aaPredicted RBP27.35■■□□□ 1.97
SCAMP3-209ENST00000497470 POLR3AO14802 1390 aaPredicted RBP27.34■■□□□ 1.97
SCAMP3-209ENST00000497470 ZNF692Q9BU19 519 aaPredicted RBP27.33■■□□□ 1.97
SCAMP3-209ENST00000497470 PPIP5K1Q6PFW1 1433 aa27.32■■□□□ 1.96
SCAMP3-209ENST00000497470 KIF1AQ12756 1690 aa27.31■■□□□ 1.96
SCAMP3-209ENST00000497470 CPSF1Q10570 1443 aaKnown RBP27.31■■□□□ 1.96
SCAMP3-209ENST00000497470 TERF2IPQ9NYB0 399 aa27.3■■□□□ 1.96
SCAMP3-209ENST00000497470 ANKRD36BQ8N2N9 1353 aa27.3■■□□□ 1.96
SCAMP3-209ENST00000497470 CABP1Q9NZU7 370 aa27.29■■□□□ 1.96
SCAMP3-209ENST00000497470 PHF8Q9UPP1 1060 aa27.29■■□□□ 1.96
SCAMP3-209ENST00000497470 MYOM1P52179 1685 aa27.28■■□□□ 1.96
SCAMP3-209ENST00000497470 ESCO1Q5FWF5 840 aa27.26■■□□□ 1.95
SCAMP3-209ENST00000497470 SLC12A5Q9H2X9 1139 aa27.26■■□□□ 1.95
SCAMP3-209ENST00000497470 HDGFL2Q7Z4V5 671 aaPredicted RBP27.25■■□□□ 1.95
SCAMP3-209ENST00000497470 RGPD8O14715 1765 aaPredicted RBP27.25■■□□□ 1.95
SCAMP3-209ENST00000497470 CD163L1Q9NR16 1453 aa27.24■■□□□ 1.95
SCAMP3-209ENST00000497470 BRINP3Q76B58 766 aa27.23■■□□□ 1.95
SCAMP3-209ENST00000497470 TMC1Q8TDI8 760 aa27.23■■□□□ 1.95
SCAMP3-209ENST00000497470 ORAI2Q96SN7 254 aa27.23■■□□□ 1.95
SCAMP3-209ENST00000497470 ACEP12821 1306 aa27.22■■□□□ 1.95
SCAMP3-209ENST00000497470 NPHP3Q7Z494 1330 aa27.22■■□□□ 1.95
SCAMP3-209ENST00000497470 NUTM2FA1L443 756 aa27.22■■□□□ 1.95
SCAMP3-209ENST00000497470 NGDNQ8NEJ9 315 aaKnown RBP27.2■■□□□ 1.94
SCAMP3-209ENST00000497470 UBAP1LF5GYI3 381 aa27.19■■□□□ 1.94
SCAMP3-209ENST00000497470 AKAP12Q02952 1782 aa27.19■■□□□ 1.94
SCAMP3-209ENST00000497470 A0A1W2PP64 1363 aa27.19■■□□□ 1.94
SCAMP3-209ENST00000497470 EDC4Q6P2E9 1401 aaKnown RBP27.18■■□□□ 1.94
SCAMP3-209ENST00000497470 SSH2Q76I76 1423 aa27.18■■□□□ 1.94
SCAMP3-209ENST00000497470 POLR3GLQ9BT43 218 aa27.18■■□□□ 1.94
SCAMP3-209ENST00000497470 USP6P35125 1406 aa27.17■■□□□ 1.94
SCAMP3-209ENST00000497470 PER1O15534 1290 aaPredicted RBP27.17■■□□□ 1.94
SCAMP3-209ENST00000497470 PANK3Q9H999 370 aa27.17■■□□□ 1.94
SCAMP3-209ENST00000497470 NPC1L1Q9UHC9 1359 aa27.16■■□□□ 1.94
SCAMP3-209ENST00000497470 KTN1Q86UP2 1357 aaKnown RBP27.15■■□□□ 1.94
SCAMP3-209ENST00000497470 PSME1Q06323 249 aa27.15■■□□□ 1.94
SCAMP3-209ENST00000497470 PMFBP1Q8TBY8 1022 aa27.15■■□□□ 1.94
SCAMP3-209ENST00000497470 MON2Q7Z3U7 1717 aa27.15■■□□□ 1.94
SCAMP3-209ENST00000497470 AHDC1Q5TGY3 1603 aaPredicted RBP27.15■■□□□ 1.94
SCAMP3-209ENST00000497470 SOS2Q07890 1332 aaPredicted RBP27.15■■□□□ 1.94
SCAMP3-209ENST00000497470 TTC21AQ8NDW8 1320 aa27.15■■□□□ 1.94
SCAMP3-209ENST00000497470 SBNO1A3KN83 1393 aa27.14■■□□□ 1.94
SCAMP3-209ENST00000497470 NHSL1Q5SYE7 1610 aa27.13■■□□□ 1.93
SCAMP3-209ENST00000497470 ROBO1Q9Y6N7 1651 aa27.13■■□□□ 1.93
SCAMP3-209ENST00000497470 FOXO3O43524 673 aa27.12■■□□□ 1.93
SCAMP3-209ENST00000497470 DDX10Q13206 875 aaKnown RBP27.11■■□□□ 1.93
SCAMP3-209ENST00000497470 CARD14Q9BXL6 1004 aa27.11■■□□□ 1.93
SCAMP3-209ENST00000497470 NSD2O96028 1365 aa27.1■■□□□ 1.93
SCAMP3-209ENST00000497470 PXDNQ92626 1479 aa27.09■■□□□ 1.93
SCAMP3-209ENST00000497470 KRT28Q7Z3Y7 464 aa27.09■■□□□ 1.93
SCAMP3-209ENST00000497470 KNSTRNQ9Y448 316 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms