RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 WASLO00401 505 aaPredicted RBP11.06□□□□□ -0.64
USP54-215ENST00000497106 COG3Q96JB2 828 aa11.06□□□□□ -0.64
USP54-215ENST00000497106 MAPK8IP3Q9UPT6 1336 aa11.06□□□□□ -0.64
USP54-215ENST00000497106 ANKRD36BQ8N2N9 1353 aa11.06□□□□□ -0.64
USP54-215ENST00000497106 ASXL1Q8IXJ9 1541 aa11.06□□□□□ -0.64
USP54-215ENST00000497106 SLC26A8Q96RN1 970 aa11.05□□□□□ -0.64
USP54-215ENST00000497106 AMOTL2Q9Y2J4 779 aa11.05□□□□□ -0.64
USP54-215ENST00000497106 FAM135BQ49AJ0 1406 aa11.05□□□□□ -0.64
USP54-215ENST00000497106 PDE3BQ13370 1112 aa11.05□□□□□ -0.64
USP54-215ENST00000497106 CCDC61Q9Y6R9 512 aa11.05□□□□□ -0.64
USP54-215ENST00000497106 NSD3Q9BZ95 1437 aa11.04□□□□□ -0.64
USP54-215ENST00000497106 TMEM131LA2VDJ0 1609 aa11.04□□□□□ -0.64
USP54-215ENST00000497106 PPLO60437 1756 aa11.04□□□□□ -0.64
USP54-215ENST00000497106 FER1L4A9Z1Z3 1794 aa11.04□□□□□ -0.64
USP54-215ENST00000497106 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.04□□□□□ -0.64
USP54-215ENST00000497106 DLC1Q96QB1 1528 aa11.03□□□□□ -0.64
USP54-215ENST00000497106 SLC12A5Q9H2X9 1139 aa11.03□□□□□ -0.64
USP54-215ENST00000497106 ALKQ9UM73 1620 aa11.03□□□□□ -0.64
USP54-215ENST00000497106 ZBED9Q6R2W3 1325 aa11.03□□□□□ -0.64
USP54-215ENST00000497106 NUDT16Q96DE0 195 aaKnown RBP11.03□□□□□ -0.64
USP54-215ENST00000497106 PPP2R1AP30153 589 aa11.02□□□□□ -0.65
USP54-215ENST00000497106 GTF3C3Q9Y5Q9 886 aa11.02□□□□□ -0.65
USP54-215ENST00000497106 POLR1AO95602 1720 aaPredicted RBP11.02□□□□□ -0.65
USP54-215ENST00000497106 IQGAP1P46940 1657 aa11.02□□□□□ -0.65
USP54-215ENST00000497106 TNNT2P45379 298 aaPredicted RBP11.02□□□□□ -0.65
USP54-215ENST00000497106 DMRT2Q9Y5R5 561 aa11.02□□□□□ -0.65
USP54-215ENST00000497106 PROSER2Q86WR7 435 aaPredicted RBP11.01□□□□□ -0.65
USP54-215ENST00000497106 PARD3Q8TEW0 1356 aa11.01□□□□□ -0.65
USP54-215ENST00000497106 WAPLQ7Z5K2 1190 aa11.01□□□□□ -0.65
USP54-215ENST00000497106 CABP1Q9NZU7 370 aa11.01□□□□□ -0.65
USP54-215ENST00000497106 ATF3P18847 181 aa11.01□□□□□ -0.65
USP54-215ENST00000497106 DIP2AQ14689 1571 aa11□□□□□ -0.65
USP54-215ENST00000497106 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11□□□□□ -0.65
USP54-215ENST00000497106 PPM1GO15355 546 aaPredicted RBP10.99□□□□□ -0.65
USP54-215ENST00000497106 CALD1Q05682 793 aaKnown RBP10.99□□□□□ -0.65
USP54-215ENST00000497106 U2SURPO15042 1029 aaKnown RBP10.99□□□□□ -0.65
USP54-215ENST00000497106 RIMS1Q86UR5 1692 aaKnown RBP10.98□□□□□ -0.65
USP54-215ENST00000497106 NPHP4O75161 1426 aaPredicted RBP10.98□□□□□ -0.65
USP54-215ENST00000497106 LTKP29376 864 aa10.98□□□□□ -0.65
USP54-215ENST00000497106 IFT172Q9UG01 1749 aa10.98□□□□□ -0.65
USP54-215ENST00000497106 INSRP06213 1382 aa10.97□□□□□ -0.65
USP54-215ENST00000497106 CEP170BQ9Y4F5 1589 aaPredicted RBP10.97□□□□□ -0.65
USP54-215ENST00000497106 U2AF1L5P0DN76 240 aaPredicted RBP10.97□□□□□ -0.65
USP54-215ENST00000497106 CANXP27824 592 aaKnown RBP10.97□□□□□ -0.65
USP54-215ENST00000497106 U2AF1Q01081 240 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP54-215ENST00000497106 ADGRB1O14514 1584 aa10.97□□□□□ -0.65
USP54-215ENST00000497106 PSME1Q06323 249 aa10.97□□□□□ -0.65
USP54-215ENST00000497106 PAK3O75914 559 aaPredicted RBP10.96□□□□□ -0.65
USP54-215ENST00000497106 KCNA6P17658 529 aa10.96□□□□□ -0.65
USP54-215ENST00000497106 TTC21AQ8NDW8 1320 aa10.96□□□□□ -0.65
USP54-215ENST00000497106 PPIP5K1Q6PFW1 1433 aa10.96□□□□□ -0.65
USP54-215ENST00000497106 SIGLEC1Q9BZZ2 1709 aa10.96□□□□□ -0.65
USP54-215ENST00000497106 SLIT1O75093 1534 aa10.96□□□□□ -0.65
USP54-215ENST00000497106 LMOD3Q0VAK6 560 aa10.96□□□□□ -0.65
USP54-215ENST00000497106 AMER1Q5JTC6 1135 aaPredicted RBP10.96□□□□□ -0.65
USP54-215ENST00000497106 PNISRQ8TF01 805 aaKnown RBP10.96□□□□□ -0.65
USP54-215ENST00000497106 PER1O15534 1290 aaPredicted RBP10.96□□□□□ -0.66
USP54-215ENST00000497106 DIAPH1O60610 1272 aaKnown RBP10.96□□□□□ -0.66
USP54-215ENST00000497106 ATP7BP35670 1465 aa10.96□□□□□ -0.66
USP54-215ENST00000497106 QRICH2Q9H0J4 1663 aa10.96□□□□□ -0.66
USP54-215ENST00000497106 MYO3AQ8NEV4 1616 aa10.96□□□□□ -0.66
USP54-215ENST00000497106 METP08581 1390 aa10.95□□□□□ -0.66
USP54-215ENST00000497106 ERICH6BQ5W0A0 696 aa10.95□□□□□ -0.66
USP54-215ENST00000497106 GGNBP2Q9H3C7 697 aa10.95□□□□□ -0.66
USP54-215ENST00000497106 SALL2Q9Y467 1007 aaPredicted RBP10.95□□□□□ -0.66
USP54-215ENST00000497106 TECPR2O15040 1411 aa10.94□□□□□ -0.66
USP54-215ENST00000497106 ARHGAP23Q9P227 1491 aa10.94□□□□□ -0.66
USP54-215ENST00000497106 PTCH1Q13635 1447 aa10.94□□□□□ -0.66
USP54-215ENST00000497106 NUTM2FA1L443 756 aa10.94□□□□□ -0.66
USP54-215ENST00000497106 HAP1P54257 671 aaPredicted RBP10.94□□□□□ -0.66
USP54-215ENST00000497106 PTPRMP28827 1452 aa10.94□□□□□ -0.66
USP54-215ENST00000497106 EDC4Q6P2E9 1401 aaKnown RBP10.94□□□□□ -0.66
USP54-215ENST00000497106 AMPHP49418 695 aa10.93□□□□□ -0.66
USP54-215ENST00000497106 LMOD2Q6P5Q4 547 aa10.93□□□□□ -0.66
USP54-215ENST00000497106 RUNDC1Q96C34 613 aa10.93□□□□□ -0.66
USP54-215ENST00000497106 MYH16Q9H6N6 1097 aa10.93□□□□□ -0.66
USP54-215ENST00000497106 C3P01024 1663 aa10.92□□□□□ -0.66
USP54-215ENST00000497106 A0A1W2PP64 1363 aa10.92□□□□□ -0.66
USP54-215ENST00000497106 MTHFSP49914 203 aa10.92□□□□□ -0.66
USP54-215ENST00000497106 GOLGA2Q08379 1002 aa10.92□□□□□ -0.66
USP54-215ENST00000497106 POLR3AO14802 1390 aaPredicted RBP10.92□□□□□ -0.66
USP54-215ENST00000497106 ANKARQ7Z5J8 1434 aa10.92□□□□□ -0.66
USP54-215ENST00000497106 PHF8Q9UPP1 1060 aa10.92□□□□□ -0.66
USP54-215ENST00000497106 ESCO1Q5FWF5 840 aa10.91□□□□□ -0.66
USP54-215ENST00000497106 MS4A1P11836 297 aa10.91□□□□□ -0.66
USP54-215ENST00000497106 FKBP8Q14318 412 aa10.91□□□□□ -0.66
USP54-215ENST00000497106 CADPS2Q86UW7 1296 aa10.91□□□□□ -0.66
USP54-215ENST00000497106 NCKAP5LQ9HCH0 1330 aa10.91□□□□□ -0.66
USP54-215ENST00000497106 UBR1Q8IWV7 1749 aa10.9□□□□□ -0.66
USP54-215ENST00000497106 ADAMTS13Q76LX8 1427 aa10.9□□□□□ -0.66
USP54-215ENST00000497106 PLEKHG3A1L390 1219 aa10.9□□□□□ -0.66
USP54-215ENST00000497106 MSH6P52701 1360 aa10.9□□□□□ -0.66
USP54-215ENST00000497106 ZBTB7CA1YPR0 619 aa10.9□□□□□ -0.67
USP54-215ENST00000497106 ACEP12821 1306 aa10.89□□□□□ -0.67
USP54-215ENST00000497106 SETD1BQ9UPS6 1966 aaKnown RBP10.89□□□□□ -0.67
USP54-215ENST00000497106 E9PSI1 815 aa10.89□□□□□ -0.67
USP54-215ENST00000497106 KCNH5Q8NCM2 988 aa10.89□□□□□ -0.67
USP54-215ENST00000497106 ROBO2Q9HCK4 1378 aa10.89□□□□□ -0.67
USP54-215ENST00000497106 PLEKHH1Q9ULM0 1364 aa10.89□□□□□ -0.67
USP54-215ENST00000497106 NLRP6P59044 892 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms