RNA–Protein interactions for RNA: ENST00000497089.1

HOXA9-206, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 1,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-206ENST00000497089 NCOA2Q15596 1464 aa10.12□□□□□ -0.79
HOXA9-206ENST00000497089 MBD5Q9P267 1494 aa10.12□□□□□ -0.79
HOXA9-206ENST00000497089 HNRNPMP52272 730 aaKnown RBP eCLIP10.11□□□□□ -0.79
HOXA9-206ENST00000497089 DAXXQ9UER7 740 aaPredicted RBP10.11□□□□□ -0.79
HOXA9-206ENST00000497089 ZNF777Q9ULD5 760 aaPredicted RBP10.11□□□□□ -0.79
HOXA9-206ENST00000497089 ATP7AQ04656 1500 aa10.1□□□□□ -0.79
HOXA9-206ENST00000497089 SPAG9O60271 1321 aaKnown RBP10.1□□□□□ -0.79
HOXA9-206ENST00000497089 LRRC9Q6ZRR7 1453 aa10.1□□□□□ -0.79
HOXA9-206ENST00000497089 PTGER2P43116 358 aa10.1□□□□□ -0.79
HOXA9-206ENST00000497089 MLECQ14165 292 aa10.1□□□□□ -0.79
HOXA9-206ENST00000497089 PLXNC1O60486 1568 aa10.1□□□□□ -0.79
HOXA9-206ENST00000497089 ST18O60284 1047 aa10.09□□□□□ -0.79
HOXA9-206ENST00000497089 MYT1LQ9UL68 1186 aa10.09□□□□□ -0.79
HOXA9-206ENST00000497089 ZNF644Q9H582 1327 aaPredicted RBP10.08□□□□□ -0.8
HOXA9-206ENST00000497089 RTEL1-TNFRSF6BF6WH68 1400 aa10.08□□□□□ -0.8
HOXA9-206ENST00000497089 MLLT3P42568 568 aaPredicted RBP10.08□□□□□ -0.8
HOXA9-206ENST00000497089 SETD1BQ9UPS6 1966 aaKnown RBP10.07□□□□□ -0.8
HOXA9-206ENST00000497089 ADGBQ8N7X0 1667 aa10.07□□□□□ -0.8
HOXA9-206ENST00000497089 ZC3H15Q8WU90 426 aaKnown RBP10.07□□□□□ -0.8
HOXA9-206ENST00000497089 FAM163AQ96GL9 167 aaPredicted RBP10.07□□□□□ -0.8
HOXA9-206ENST00000497089 CNTLNQ9NXG0 1405 aa10.06□□□□□ -0.8
HOXA9-206ENST00000497089 RSPH4AQ5TD94 716 aa10.06□□□□□ -0.8
HOXA9-206ENST00000497089 DDX12PQ92771 950 aa10.06□□□□□ -0.8
HOXA9-206ENST00000497089 A2MP01023 1474 aa10.06□□□□□ -0.8
HOXA9-206ENST00000497089 CAMSAP2Q08AD1 1489 aa10.06□□□□□ -0.8
HOXA9-206ENST00000497089 ARHGEF5Q12774 1597 aa10.06□□□□□ -0.8
HOXA9-206ENST00000497089 C3P01024 1663 aa10.06□□□□□ -0.8
HOXA9-206ENST00000497089 PREX1Q8TCU6 1659 aa10.06□□□□□ -0.8
HOXA9-206ENST00000497089 CCDC141Q6ZP82 1450 aa10.05□□□□□ -0.8
HOXA9-206ENST00000497089 MROH2AA6NES4 1674 aa10.05□□□□□ -0.8
HOXA9-206ENST00000497089 KANK4Q5T7N3 995 aaPredicted RBP10.04□□□□□ -0.8
HOXA9-206ENST00000497089 LHX6Q9UPM6 363 aa10.04□□□□□ -0.8
HOXA9-206ENST00000497089 GRXCR2A6NFK2 248 aa10.03□□□□□ -0.8
HOXA9-206ENST00000497089 MIA2Q96PC5 1412 aa10.03□□□□□ -0.8
HOXA9-206ENST00000497089 PHF14O94880 888 aa10.02□□□□□ -0.8
HOXA9-206ENST00000497089 CEBPAP49715 358 aaPredicted RBP10.02□□□□□ -0.8
HOXA9-206ENST00000497089 LCE2DQ5TA82 110 aaPredicted RBP10.02□□□□□ -0.8
HOXA9-206ENST00000497089 NPATQ14207 1427 aa10.02□□□□□ -0.81
HOXA9-206ENST00000497089 MYOM3Q5VTT5 1437 aa10.02□□□□□ -0.81
HOXA9-206ENST00000497089 DHX29Q7Z478 1369 aaKnown RBP10.02□□□□□ -0.81
HOXA9-206ENST00000497089 FOSBP53539 338 aa10.01□□□□□ -0.81
HOXA9-206ENST00000497089 MAST1Q9Y2H9 1570 aa10.01□□□□□ -0.81
HOXA9-206ENST00000497089 UHRF1BP1Q6BDS2 1440 aa10.01□□□□□ -0.81
HOXA9-206ENST00000497089 OSBPP22059 807 aa10.01□□□□□ -0.81
HOXA9-206ENST00000497089 MARVELD3Q96A59 401 aa10.01□□□□□ -0.81
HOXA9-206ENST00000497089 ESF1Q9H501 851 aaKnown RBP10.01□□□□□ -0.81
HOXA9-206ENST00000497089 PCDHGA10Q9Y5H3 936 aa10.01□□□□□ -0.81
HOXA9-206ENST00000497089 FAM135AQ9P2D6 1515 aa10□□□□□ -0.81
HOXA9-206ENST00000497089 ZMYM3Q14202 1370 aa10□□□□□ -0.81
HOXA9-206ENST00000497089 PSDA5PKW4 1024 aaPredicted RBP10□□□□□ -0.81
HOXA9-206ENST00000497089 HSPA2P54652 639 aa10□□□□□ -0.81
HOXA9-206ENST00000497089 EMP3P54852 163 aa10□□□□□ -0.81
HOXA9-206ENST00000497089 RBM26Q5T8P6 1007 aaKnown RBP10□□□□□ -0.81
HOXA9-206ENST00000497089 GPIHBP1Q8IV16 184 aa10□□□□□ -0.81
HOXA9-206ENST00000497089 ZNF454Q8N9F8 522 aa10□□□□□ -0.81
HOXA9-206ENST00000497089 EPAS1Q99814 870 aa10□□□□□ -0.81
HOXA9-206ENST00000497089 CLTCQ00610 1675 aaKnown RBP9.99□□□□□ -0.81
HOXA9-206ENST00000497089 ZMYND10O75800 440 aa9.98□□□□□ -0.81
HOXA9-206ENST00000497089 TSPY4P0CV99 314 aa9.98□□□□□ -0.81
HOXA9-206ENST00000497089 TSPY10P0CW01 314 aa9.98□□□□□ -0.81
HOXA9-206ENST00000497089 TYW1BQ6NUM6 668 aa9.98□□□□□ -0.81
HOXA9-206ENST00000497089 STRCQ7RTU9 1775 aa9.97□□□□□ -0.81
HOXA9-206ENST00000497089 FBXW7Q969H0 707 aa9.97□□□□□ -0.81
HOXA9-206ENST00000497089 ERBB3P21860 1342 aa9.97□□□□□ -0.81
HOXA9-206ENST00000497089 PTPRKQ15262 1439 aa9.96□□□□□ -0.81
HOXA9-206ENST00000497089 ZEB1P37275 1124 aaPredicted RBP9.96□□□□□ -0.82
HOXA9-206ENST00000497089 PRIM1P49642 420 aaKnown RBP9.96□□□□□ -0.82
HOXA9-206ENST00000497089 PPP4R3BQ5MIZ7 849 aa9.96□□□□□ -0.82
HOXA9-206ENST00000497089 GGT6Q6P531 493 aa9.96□□□□□ -0.82
HOXA9-206ENST00000497089 ZDHHC16Q969W1 377 aa9.96□□□□□ -0.82
HOXA9-206ENST00000497089 SLC24A3Q9HC58 644 aa9.96□□□□□ -0.82
HOXA9-206ENST00000497089 SHANK2Q9UPX8 1470 aa9.96□□□□□ -0.82
HOXA9-206ENST00000497089 EIF2AK4Q9P2K8 1649 aaKnown RBP9.95□□□□□ -0.82
HOXA9-206ENST00000497089 EN1Q05925 392 aaPredicted RBP9.95□□□□□ -0.82
HOXA9-206ENST00000497089 TCOF1Q13428 1488 aaKnown RBP9.95□□□□□ -0.82
HOXA9-206ENST00000497089 KDM5DQ9BY66 1539 aa9.95□□□□□ -0.82
HOXA9-206ENST00000497089 RNF17Q9BXT8 1623 aaKnown RBP9.95□□□□□ -0.82
HOXA9-206ENST00000497089 PTPN23Q9H3S7 1636 aa9.95□□□□□ -0.82
HOXA9-206ENST00000497089 CROCC2H7BZ55 1655 aa9.95□□□□□ -0.82
HOXA9-206ENST00000497089 ZNF142P52746 1687 aaPredicted RBP9.95□□□□□ -0.82
HOXA9-206ENST00000497089 KIF3BO15066 747 aa9.94□□□□□ -0.82
HOXA9-206ENST00000497089 VARS2Q5ST30 1063 aaKnown RBP9.94□□□□□ -0.82
HOXA9-206ENST00000497089 BARGINQ6ZT62 677 aa9.94□□□□□ -0.82
HOXA9-206ENST00000497089 FGD6Q6ZV73 1430 aa9.94□□□□□ -0.82
HOXA9-206ENST00000497089 FAM205CA6NFA0 338 aa9.93□□□□□ -0.82
HOXA9-206ENST00000497089 ABCC5O15440 1437 aa9.93□□□□□ -0.82
HOXA9-206ENST00000497089 DNMT1P26358 1616 aaKnown RBP9.93□□□□□ -0.82
HOXA9-206ENST00000497089 PPARGC1BQ86YN6 1023 aaKnown RBP9.93□□□□□ -0.82
HOXA9-206ENST00000497089 KRI1Q8N9T8 703 aaKnown RBP9.93□□□□□ -0.82
HOXA9-206ENST00000497089 MYO3AQ8NEV4 1616 aa9.93□□□□□ -0.82
HOXA9-206ENST00000497089 DUOX2Q9NRD8 1548 aa9.92□□□□□ -0.82
HOXA9-206ENST00000497089 PZPP20742 1482 aa9.92□□□□□ -0.82
HOXA9-206ENST00000497089 PTPRTO14522 1441 aa9.92□□□□□ -0.82
HOXA9-206ENST00000497089 NCOA1Q15788 1441 aa9.92□□□□□ -0.82
HOXA9-206ENST00000497089 MAP3K7O43318 606 aa9.92□□□□□ -0.82
HOXA9-206ENST00000497089 RBM33Q96EV2 1170 aaKnown RBP9.92□□□□□ -0.82
HOXA9-206ENST00000497089 ADAM33Q9BZ11 813 aa9.92□□□□□ -0.82
HOXA9-206ENST00000497089 ZC3H13Q5T200 1668 aaKnown RBP9.92□□□□□ -0.82
HOXA9-206ENST00000497089 CEP170BQ9Y4F5 1589 aaPredicted RBP9.92□□□□□ -0.82
HOXA9-206ENST00000497089 DAPK1P53355 1430 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms