RNA–Protein interactions for RNA: ENST00000497022.1

VPS26A-208, Transcript of VPS26, retromer complex component A, humanhuman

TSL 3

Gene VPS26A, Length 458 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-208ENST00000497022 INSM1Q01101 510 aaPredicted RBP8.9□□□□□ -0.98
VPS26A-208ENST00000497022 GRIPAP1Q4V328 841 aa8.9□□□□□ -0.98
VPS26A-208ENST00000497022 SMYD5Q6GMV2 418 aa8.9□□□□□ -0.98
VPS26A-208ENST00000497022 PRDM9Q9NQV7 894 aa8.9□□□□□ -0.98
VPS26A-208ENST00000497022 SNIP1Q8TAD8 396 aaKnown RBP8.89□□□□□ -0.99
VPS26A-208ENST00000497022 TESPA1A2RU30 521 aaPredicted RBP8.88□□□□□ -0.99
VPS26A-208ENST00000497022 GPR37O15354 613 aa8.87□□□□□ -0.99
VPS26A-208ENST00000497022 SMPD1P17405 629 aa8.87□□□□□ -0.99
VPS26A-208ENST00000497022 FECHP22830 423 aa8.87□□□□□ -0.99
VPS26A-208ENST00000497022 TRIM32Q13049 653 aa8.87□□□□□ -0.99
VPS26A-208ENST00000497022 RBM26Q5T8P6 1007 aaKnown RBP8.87□□□□□ -0.99
VPS26A-208ENST00000497022 VSIG10Q8N0Z9 540 aa8.87□□□□□ -0.99
VPS26A-208ENST00000497022 SENP2Q9HC62 589 aa8.87□□□□□ -0.99
VPS26A-208ENST00000497022 ATP13A2Q9NQ11 1180 aa8.87□□□□□ -0.99
VPS26A-208ENST00000497022 MMP16P51512 607 aa8.86□□□□□ -0.99
VPS26A-208ENST00000497022 Q3C1V9 767 aa8.86□□□□□ -0.99
VPS26A-208ENST00000497022 RNF19BQ6ZMZ0 732 aa8.86□□□□□ -0.99
VPS26A-208ENST00000497022 REPIN1Q9BWE0 567 aaKnown RBP8.86□□□□□ -0.99
VPS26A-208ENST00000497022 TRIM47Q96LD4 638 aa8.85□□□□□ -0.99
VPS26A-208ENST00000497022 TERTO14746 1132 aaKnown RBP8.83□□□□□ -1
VPS26A-208ENST00000497022 KIFC2Q96AC6 838 aa8.83□□□□□ -1
VPS26A-208ENST00000497022 MRGPRX2Q96LB1 330 aa8.83□□□□□ -1
VPS26A-208ENST00000497022 NLRP7Q8WX94 980 aa8.82□□□□□ -1
VPS26A-208ENST00000497022 SNRPBP14678 240 aaKnown RBP8.81□□□□□ -1
VPS26A-208ENST00000497022 PHOX2BQ99453 314 aa8.81□□□□□ -1
VPS26A-208ENST00000497022 J3QL48 77 aa8.8□□□□□ -1
VPS26A-208ENST00000497022 DXOO77932 396 aaKnown RBP8.8□□□□□ -1
VPS26A-208ENST00000497022 USB1Q9BQ65 265 aaKnown RBP8.79□□□□□ -1
VPS26A-208ENST00000497022 WNT7BP56706 349 aa8.78□□□□□ -1
VPS26A-208ENST00000497022 CD46P15529 392 aa8.77□□□□□ -1.01
VPS26A-208ENST00000497022 LCE2CQ5TA81 110 aa8.77□□□□□ -1.01
VPS26A-208ENST00000497022 HPS1Q92902 700 aa8.77□□□□□ -1.01
VPS26A-208ENST00000497022 USP46P62068 366 aa8.76□□□□□ -1.01
VPS26A-208ENST00000497022 KDM4AO75164 1064 aa8.75□□□□□ -1.01
VPS26A-208ENST00000497022 RC3H1Q5TC82 1133 aaKnown RBP8.74□□□□□ -1.01
VPS26A-208ENST00000497022 GPIHBP1Q8IV16 184 aa8.74□□□□□ -1.01
VPS26A-208ENST00000497022 FAM181BA6NEQ2 426 aa8.73□□□□□ -1.01
VPS26A-208ENST00000497022 SLC16A10Q8TF71 515 aa8.73□□□□□ -1.01
VPS26A-208ENST00000497022 SKOR1P84550 965 aa8.72□□□□□ -1.01
VPS26A-208ENST00000497022 NPAS3Q8IXF0 933 aa8.71□□□□□ -1.02
VPS26A-208ENST00000497022 CCDC24Q8N4L8 307 aa8.71□□□□□ -1.02
VPS26A-208ENST00000497022 NXF1Q9UBU9 619 aaKnown RBP8.7□□□□□ -1.02
VPS26A-208ENST00000497022 HOXA2O43364 376 aa8.69□□□□□ -1.02
VPS26A-208ENST00000497022 ALDH1A1P00352 501 aa8.69□□□□□ -1.02
VPS26A-208ENST00000497022 MAP2K5Q13163 448 aa8.69□□□□□ -1.02
VPS26A-208ENST00000497022 JUNDP17535 347 aa8.68□□□□□ -1.02
VPS26A-208ENST00000497022 SIAH2O43255 324 aa8.66□□□□□ -1.02
VPS26A-208ENST00000497022 IRF7Q92985 503 aa8.66□□□□□ -1.02
VPS26A-208ENST00000497022 EHBP1Q8NDI1 1231 aa8.65□□□□□ -1.02
VPS26A-208ENST00000497022 HLA-CQ95604 372 aa8.65□□□□□ -1.02
VPS26A-208ENST00000497022 CAPN5O15484 640 aaPredicted RBP8.64□□□□□ -1.03
VPS26A-208ENST00000497022 RETREG3Q86VR2 466 aa8.64□□□□□ -1.03
VPS26A-208ENST00000497022 ZSCAN1Q8NBB4 408 aa8.64□□□□□ -1.03
VPS26A-208ENST00000497022 WASF2Q9Y6W5 498 aa8.64□□□□□ -1.03
VPS26A-208ENST00000497022 IRF6O14896 467 aa8.63□□□□□ -1.03
VPS26A-208ENST00000497022 GMPRP36959 345 aa8.63□□□□□ -1.03
VPS26A-208ENST00000497022 MDM2Q00987 491 aaPredicted RBP8.63□□□□□ -1.03
VPS26A-208ENST00000497022 TRIM46Q7Z4K8 759 aa8.63□□□□□ -1.03
VPS26A-208ENST00000497022 NUDT12Q9BQG2 462 aa8.63□□□□□ -1.03
VPS26A-208ENST00000497022 H3BM21 787 aa8.62□□□□□ -1.03
VPS26A-208ENST00000497022 BMP1P13497 986 aa8.62□□□□□ -1.03
VPS26A-208ENST00000497022 LORP23490 312 aaPredicted RBP8.61□□□□□ -1.03
VPS26A-208ENST00000497022 MINK1Q8N4C8 1332 aaPredicted RBP8.6□□□□□ -1.03
VPS26A-208ENST00000497022 GUCA2AQ02747 115 aa8.6□□□□□ -1.03
VPS26A-208ENST00000497022 CLCN1P35523 988 aa8.59□□□□□ -1.03
VPS26A-208ENST00000497022 PTCRAQ6ISU1 281 aaPredicted RBP8.59□□□□□ -1.03
VPS26A-208ENST00000497022 GPCPD1Q9NPB8 672 aa8.59□□□□□ -1.03
VPS26A-208ENST00000497022 CCNYL3P0C7X3 344 aa8.58□□□□□ -1.04
VPS26A-208ENST00000497022 SH3BP2P78314 561 aa8.58□□□□□ -1.04
VPS26A-208ENST00000497022 NUTM1Q86Y26 1132 aa8.58□□□□□ -1.04
VPS26A-208ENST00000497022 FAM217BQ9NTX9 383 aaPredicted RBP8.58□□□□□ -1.04
VPS26A-208ENST00000497022 MS4A1P11836 297 aa8.57□□□□□ -1.04
VPS26A-208ENST00000497022 SYMPKQ92797 1274 aaKnown RBP8.57□□□□□ -1.04
VPS26A-208ENST00000497022 TULP1O00294 542 aaPredicted RBP8.56□□□□□ -1.04
VPS26A-208ENST00000497022 PTPRNQ16849 979 aa8.56□□□□□ -1.04
VPS26A-208ENST00000497022 MPNDQ8N594 471 aa8.56□□□□□ -1.04
VPS26A-208ENST00000497022 PLEKHG3A1L390 1219 aa8.55□□□□□ -1.04
VPS26A-208ENST00000497022 CCDC102AQ96A19 550 aa8.55□□□□□ -1.04
VPS26A-208ENST00000497022 ZFP42Q96MM3 310 aa8.55□□□□□ -1.04
VPS26A-208ENST00000497022 ERBB4Q15303 1308 aa8.54□□□□□ -1.04
VPS26A-208ENST00000497022 FDX1P10109 184 aa8.54□□□□□ -1.04
VPS26A-208ENST00000497022 VEGFBP49765 207 aa8.54□□□□□ -1.04
VPS26A-208ENST00000497022 UNC93B1Q9H1C4 597 aa8.54□□□□□ -1.04
VPS26A-208ENST00000497022 C6orf229H3BNL8 230 aa8.53□□□□□ -1.04
VPS26A-208ENST00000497022 VARSP26640 1264 aaKnown RBP8.53□□□□□ -1.04
VPS26A-208ENST00000497022 EVA1BQ9NVM1 165 aa8.53□□□□□ -1.04
VPS26A-208ENST00000497022 VSIG8P0DPA2 414 aa8.52□□□□□ -1.05
VPS26A-208ENST00000497022 SCARF1Q14162 830 aa8.52□□□□□ -1.05
VPS26A-208ENST00000497022 MRPL14Q6P1L8 145 aaKnown RBP8.52□□□□□ -1.05
VPS26A-208ENST00000497022 PCDHGC3Q9UN70 934 aa8.52□□□□□ -1.05
VPS26A-208ENST00000497022 TLL2Q9Y6L7 1015 aa8.52□□□□□ -1.05
VPS26A-208ENST00000497022 LOC100996750A0A140TA64 210 aa8.51□□□□□ -1.05
VPS26A-208ENST00000497022 NNTQ13423 1086 aa8.51□□□□□ -1.05
VPS26A-208ENST00000497022 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.51□□□□□ -1.05
VPS26A-208ENST00000497022 KRTAP4-6Q9BYQ5 205 aa8.51□□□□□ -1.05
VPS26A-208ENST00000497022 ADH1CP00326 375 aa8.5□□□□□ -1.05
VPS26A-208ENST00000497022 KCNH2Q12809 1159 aa8.5□□□□□ -1.05
VPS26A-208ENST00000497022 DESI1Q6ICB0 168 aa8.5□□□□□ -1.05
VPS26A-208ENST00000497022 ZNF511Q8NB15 262 aa8.5□□□□□ -1.05
VPS26A-208ENST00000497022 SPDYE5A6NIY4 337 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms