RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 NAT10Q9H0A0 1025 aaKnown RBP6.98□□□□□ -1.29
USF3-204ENST00000496826 SH3BGRP55822 239 aaPredicted RBP6.97□□□□□ -1.29
USF3-204ENST00000496826 C16orf72Q14CZ0 275 aa6.97□□□□□ -1.29
USF3-204ENST00000496826 GBP6Q6ZN66 633 aa6.97□□□□□ -1.29
USF3-204ENST00000496826 CACYBPQ9HB71 228 aaKnown RBP6.97□□□□□ -1.29
USF3-204ENST00000496826 CFAP45Q9UL16 551 aa6.97□□□□□ -1.29
USF3-204ENST00000496826 KIF5AQ12840 1032 aa6.97□□□□□ -1.29
USF3-204ENST00000496826 TSPY4P0CV99 314 aa6.97□□□□□ -1.29
USF3-204ENST00000496826 TSPY10P0CW01 314 aa6.97□□□□□ -1.29
USF3-204ENST00000496826 SKOR2Q2VWA4 1001 aaPredicted RBP6.97□□□□□ -1.29
USF3-204ENST00000496826 CCAR2Q8N163 923 aaKnown RBP6.97□□□□□ -1.29
USF3-204ENST00000496826 SEC63Q9UGP8 760 aaKnown RBP6.97□□□□□ -1.29
USF3-204ENST00000496826 FILIP1Q7Z7B0 1213 aa6.97□□□□□ -1.29
USF3-204ENST00000496826 ZSCAN31Q96LW9 406 aaPredicted RBP6.97□□□□□ -1.29
USF3-204ENST00000496826 CENPHQ9H3R5 247 aa6.97□□□□□ -1.29
USF3-204ENST00000496826 POTEB3A0JP26 581 aa6.96□□□□□ -1.29
USF3-204ENST00000496826 PDE4AP27815 886 aa6.96□□□□□ -1.29
USF3-204ENST00000496826 POTEBQ6S5H4 581 aa6.96□□□□□ -1.29
USF3-204ENST00000496826 CAPZA3Q96KX2 299 aa6.96□□□□□ -1.29
USF3-204ENST00000496826 MAP4K4O95819 1239 aaPredicted RBP6.96□□□□□ -1.29
USF3-204ENST00000496826 OLFM4Q6UX06 510 aa6.96□□□□□ -1.29
USF3-204ENST00000496826 PLEKHD1A6NEE1 506 aa6.96□□□□□ -1.3
USF3-204ENST00000496826 XBP1P17861 261 aa6.96□□□□□ -1.3
USF3-204ENST00000496826 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.96□□□□□ -1.3
USF3-204ENST00000496826 ANAPC15P60006 121 aa6.96□□□□□ -1.3
USF3-204ENST00000496826 CCDC174Q6PII3 467 aa6.96□□□□□ -1.3
USF3-204ENST00000496826 RBM19Q9Y4C8 960 aaKnown RBP6.96□□□□□ -1.3
USF3-204ENST00000496826 MCM6Q14566 821 aa6.96□□□□□ -1.3
USF3-204ENST00000496826 TMEM132AQ24JP5 1023 aa6.96□□□□□ -1.3
USF3-204ENST00000496826 RSPH3Q86UC2 560 aa6.96□□□□□ -1.3
USF3-204ENST00000496826 PPP1R1BQ9UD71 204 aaPredicted RBP6.96□□□□□ -1.3
USF3-204ENST00000496826 TSNARE1Q96NA8 513 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 PRC1O43663 620 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 NAP1L1P55209 391 aaKnown RBP6.95□□□□□ -1.3
USF3-204ENST00000496826 MAP7Q14244 749 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 WASHC2CQ9Y4E1 1318 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 GCOM1H8Y6P7 765 aaPredicted RBP6.95□□□□□ -1.3
USF3-204ENST00000496826 MYZAPP0CAP1 466 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 CAMK4Q16566 473 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 KIF4BQ2VIQ3 1234 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 EIF3AQ14152 1382 aaKnown RBP6.95□□□□□ -1.3
USF3-204ENST00000496826 KIF4AO95239 1232 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 CALCOCO2Q13137 446 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 PDCD2Q16342 344 aaPredicted RBP6.95□□□□□ -1.3
USF3-204ENST00000496826 CEP57L1Q8IYX8 460 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 CCDC82Q8N4S0 544 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 FRAT2O75474 233 aaPredicted RBP6.95□□□□□ -1.3
USF3-204ENST00000496826 ZBTB17Q13105 803 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 MICALCLQ6ZW33 695 aa6.95□□□□□ -1.3
USF3-204ENST00000496826 FKBP15Q5T1M5 1219 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 RPGRIP1Q96KN7 1286 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 DYNC1I1O14576 645 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 MCM3P25205 808 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 HNRNPUQ00839 825 aaKnown RBP eCLIP6.94□□□□□ -1.3
USF3-204ENST00000496826 RABGAP1Q9Y3P9 1069 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 CT47B1P0C2W7 299 aaPredicted RBP6.94□□□□□ -1.3
USF3-204ENST00000496826 MRVI1Q9Y6F6 885 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 AEBP1Q8IUX7 1158 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 KIF7Q2M1P5 1343 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 PHLDB2Q86SQ0 1253 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 CCDC50Q8IVM0 306 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 SSR1P43307 286 aaKnown RBP6.94□□□□□ -1.3
USF3-204ENST00000496826 ANAPC4Q9UJX5 808 aa6.94□□□□□ -1.3
USF3-204ENST00000496826 ST18O60284 1047 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 SAFBQ15424 915 aaKnown RBP eCLIP6.93□□□□□ -1.3
USF3-204ENST00000496826 MGEA5O60502 916 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 H3BQV1 296 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 NUCB2P80303 420 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 IFFO2Q5TF58 517 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 ARMC9Q7Z3E5 817 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 PABPN1Q86U42 306 aaKnown RBP eCLIP6.93□□□□□ -1.3
USF3-204ENST00000496826 LUZP1Q86V48 1076 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 MIPOL1Q8TD10 442 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 FERMT2Q96AC1 680 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 BRD2P25440 801 aaKnown RBP6.93□□□□□ -1.3
USF3-204ENST00000496826 NAP1L3Q99457 506 aaPredicted RBP6.93□□□□□ -1.3
USF3-204ENST00000496826 ESPNB1AK53 854 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 PPP1R12BO60237 982 aaPredicted RBP6.93□□□□□ -1.3
USF3-204ENST00000496826 JAKMIP3Q5VZ66 844 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 STK31Q9BXU1 1019 aa6.93□□□□□ -1.3
USF3-204ENST00000496826 RNF214Q8ND24 703 aa6.92□□□□□ -1.3
USF3-204ENST00000496826 SUDS3Q9H7L9 328 aaPredicted RBP6.92□□□□□ -1.3
USF3-204ENST00000496826 GBP3Q9H0R5 595 aa6.92□□□□□ -1.3
USF3-204ENST00000496826 CHMP2AO43633 222 aa6.92□□□□□ -1.3
USF3-204ENST00000496826 GTF2E1P29083 439 aaPredicted RBP6.92□□□□□ -1.3
USF3-204ENST00000496826 RGS22Q8NE09 1264 aa6.92□□□□□ -1.3
USF3-204ENST00000496826 DRC1Q96MC2 740 aa6.92□□□□□ -1.3
USF3-204ENST00000496826 KNSTRNQ9Y448 316 aa6.92□□□□□ -1.3
USF3-204ENST00000496826 ERICH2A1L162 156 aa6.92□□□□□ -1.3
USF3-204ENST00000496826 SMC2O95347 1197 aa6.92□□□□□ -1.3
USF3-204ENST00000496826 TMF1P82094 1093 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 CFAP100Q494V2 611 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 LRSAM1Q6UWE0 723 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 APLFQ8IW19 511 aaPredicted RBP6.91□□□□□ -1.3
USF3-204ENST00000496826 COG6Q9Y2V7 657 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 GMNNO75496 209 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 SRPK2P78362 688 aaKnown RBP6.91□□□□□ -1.3
USF3-204ENST00000496826 CFAP58Q5T655 872 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 CCDC102AQ96A19 550 aa6.91□□□□□ -1.3
USF3-204ENST00000496826 SPDYE4A6NLX3 237 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms