RNA–Protein interactions for RNA: ENST00000496202.5

PRPF3-207, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 1 (best)

Gene PRPF3, Length 1,082 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-207ENST00000496202 UBAP1LF5GYI3 381 aa13.72□□□□□ -0.21
PRPF3-207ENST00000496202 TOM1O60784 492 aa13.72□□□□□ -0.21
PRPF3-207ENST00000496202 ATF3P18847 181 aa13.72□□□□□ -0.21
PRPF3-207ENST00000496202 SAFB2Q14151 953 aaKnown RBP eCLIP13.72□□□□□ -0.21
PRPF3-207ENST00000496202 WAPLQ7Z5K2 1190 aa13.72□□□□□ -0.21
PRPF3-207ENST00000496202 SIRT1Q96EB6 747 aa13.72□□□□□ -0.21
PRPF3-207ENST00000496202 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.72□□□□□ -0.21
PRPF3-207ENST00000496202 GPRASP1Q5JY77 1395 aa13.71□□□□□ -0.21
PRPF3-207ENST00000496202 NCBP3Q53F19 620 aaKnown RBP13.71□□□□□ -0.21
PRPF3-207ENST00000496202 C19orf44Q9H6X5 657 aa13.71□□□□□ -0.21
PRPF3-207ENST00000496202 DCCP43146 1447 aa13.71□□□□□ -0.22
PRPF3-207ENST00000496202 PLEKHH1Q9ULM0 1364 aa13.71□□□□□ -0.22
PRPF3-207ENST00000496202 SCAF1Q9H7N4 1312 aaKnown RBP13.7□□□□□ -0.22
PRPF3-207ENST00000496202 CADPS2Q86UW7 1296 aa13.69□□□□□ -0.22
PRPF3-207ENST00000496202 CDC42BPGQ6DT37 1551 aa13.69□□□□□ -0.22
PRPF3-207ENST00000496202 QRICH2Q9H0J4 1663 aa13.69□□□□□ -0.22
PRPF3-207ENST00000496202 MINK1Q8N4C8 1332 aaPredicted RBP13.68□□□□□ -0.22
PRPF3-207ENST00000496202 CENPJQ9HC77 1338 aaPredicted RBP13.68□□□□□ -0.22
PRPF3-207ENST00000496202 ZBTB22O15209 634 aa13.68□□□□□ -0.22
PRPF3-207ENST00000496202 ADGRB2O60241 1585 aa13.66□□□□□ -0.22
PRPF3-207ENST00000496202 PIP4K2BP78356 416 aa13.66□□□□□ -0.22
PRPF3-207ENST00000496202 FBXO41Q8TF61 875 aa13.66□□□□□ -0.22
PRPF3-207ENST00000496202 HIRIP3Q9BW71 556 aaPredicted RBP13.65□□□□□ -0.22
PRPF3-207ENST00000496202 RTN4Q9NQC3 1192 aaKnown RBP13.65□□□□□ -0.22
PRPF3-207ENST00000496202 FMN2Q9NZ56 1722 aa13.64□□□□□ -0.23
PRPF3-207ENST00000496202 USP47Q96K76 1375 aa13.64□□□□□ -0.23
PRPF3-207ENST00000496202 SLAIN2Q9P270 581 aa13.64□□□□□ -0.23
PRPF3-207ENST00000496202 NPM3O75607 178 aaKnown RBP13.63□□□□□ -0.23
PRPF3-207ENST00000496202 MST1RQ04912 1400 aa13.63□□□□□ -0.23
PRPF3-207ENST00000496202 ROBO1Q9Y6N7 1651 aa13.61□□□□□ -0.23
PRPF3-207ENST00000496202 NUTM2FA1L443 756 aa13.61□□□□□ -0.23
PRPF3-207ENST00000496202 WASLO00401 505 aaPredicted RBP13.6□□□□□ -0.23
PRPF3-207ENST00000496202 C1orf167Q5SNV9 1468 aa13.6□□□□□ -0.23
PRPF3-207ENST00000496202 EVC2Q86UK5 1308 aa13.6□□□□□ -0.23
PRPF3-207ENST00000496202 TULP4Q9NRJ4 1543 aa13.59□□□□□ -0.23
PRPF3-207ENST00000496202 ANKARQ7Z5J8 1434 aa13.59□□□□□ -0.23
PRPF3-207ENST00000496202 ITSN1Q15811 1721 aa13.59□□□□□ -0.23
PRPF3-207ENST00000496202 SBNO2Q9Y2G9 1366 aa13.58□□□□□ -0.23
PRPF3-207ENST00000496202 RGPD8O14715 1765 aaPredicted RBP13.58□□□□□ -0.23
PRPF3-207ENST00000496202 ST20-MTHFSA0A0A6YYL1 179 aa13.58□□□□□ -0.24
PRPF3-207ENST00000496202 ZEB1P37275 1124 aaPredicted RBP13.58□□□□□ -0.24
PRPF3-207ENST00000496202 SRPK2P78362 688 aaKnown RBP13.58□□□□□ -0.24
PRPF3-207ENST00000496202 EIF4G2P78344 907 aaKnown RBP eCLIP13.57□□□□□ -0.24
PRPF3-207ENST00000496202 ESCO1Q5FWF5 840 aa13.57□□□□□ -0.24
PRPF3-207ENST00000496202 CDK19Q9BWU1 502 aa13.57□□□□□ -0.24
PRPF3-207ENST00000496202 KIF1AQ12756 1690 aa13.56□□□□□ -0.24
PRPF3-207ENST00000496202 AMER1Q5JTC6 1135 aaPredicted RBP13.56□□□□□ -0.24
PRPF3-207ENST00000496202 BRINP3Q76B58 766 aa13.56□□□□□ -0.24
PRPF3-207ENST00000496202 USP32Q8NFA0 1604 aa13.55□□□□□ -0.24
PRPF3-207ENST00000496202 ORAI2Q96SN7 254 aa13.55□□□□□ -0.24
PRPF3-207ENST00000496202 PHLPP1O60346 1717 aa13.55□□□□□ -0.24
PRPF3-207ENST00000496202 ATP7BP35670 1465 aa13.55□□□□□ -0.24
PRPF3-207ENST00000496202 HSPA5P11021 654 aaKnown RBP13.54□□□□□ -0.24
PRPF3-207ENST00000496202 NUDT16Q96DE0 195 aaKnown RBP13.54□□□□□ -0.24
PRPF3-207ENST00000496202 CABP2Q9NPB3 220 aa13.54□□□□□ -0.24
PRPF3-207ENST00000496202 AHDC1Q5TGY3 1603 aaPredicted RBP13.53□□□□□ -0.24
PRPF3-207ENST00000496202 TMF1P82094 1093 aa13.53□□□□□ -0.24
PRPF3-207ENST00000496202 ILDR1Q86SU0 546 aaPredicted RBP13.53□□□□□ -0.24
PRPF3-207ENST00000496202 TESK2Q96S53 571 aa13.53□□□□□ -0.24
PRPF3-207ENST00000496202 PHF8Q9UPP1 1060 aa13.53□□□□□ -0.24
PRPF3-207ENST00000496202 PRR36Q9H6K5 1346 aa13.53□□□□□ -0.24
PRPF3-207ENST00000496202 NHSL1Q5SYE7 1610 aa13.53□□□□□ -0.24
PRPF3-207ENST00000496202 TOPAZ1Q8N9V7 1692 aa13.53□□□□□ -0.24
PRPF3-207ENST00000496202 ATAD2Q6PL18 1390 aa13.52□□□□□ -0.25
PRPF3-207ENST00000496202 NPHP3Q7Z494 1330 aa13.51□□□□□ -0.25
PRPF3-207ENST00000496202 HSPA1LP34931 641 aa13.51□□□□□ -0.25
PRPF3-207ENST00000496202 CDCA8Q53HL2 280 aa13.51□□□□□ -0.25
PRPF3-207ENST00000496202 CCDC61Q9Y6R9 512 aa13.51□□□□□ -0.25
PRPF3-207ENST00000496202 PPIP5K1Q6PFW1 1433 aa13.5□□□□□ -0.25
PRPF3-207ENST00000496202 NGDNQ8NEJ9 315 aaKnown RBP13.5□□□□□ -0.25
PRPF3-207ENST00000496202 PMFBP1Q8TBY8 1022 aa13.5□□□□□ -0.25
PRPF3-207ENST00000496202 FOXO3O43524 673 aa13.49□□□□□ -0.25
PRPF3-207ENST00000496202 DDX17Q92841 729 aaKnown RBP13.49□□□□□ -0.25
PRPF3-207ENST00000496202 COL16A1Q07092 1604 aaPredicted RBP13.49□□□□□ -0.25
PRPF3-207ENST00000496202 DISP3Q9P2K9 1392 aa13.48□□□□□ -0.25
PRPF3-207ENST00000496202 XPCQ01831 940 aaPredicted RBP13.47□□□□□ -0.25
PRPF3-207ENST00000496202 PSME1Q06323 249 aa13.47□□□□□ -0.25
PRPF3-207ENST00000496202 TMC1Q8TDI8 760 aa13.47□□□□□ -0.25
PRPF3-207ENST00000496202 PUS7Q96PZ0 661 aaKnown RBP13.47□□□□□ -0.25
PRPF3-207ENST00000496202 POLR3GLQ9BT43 218 aa13.47□□□□□ -0.25
PRPF3-207ENST00000496202 CABP1Q9NZU7 370 aa13.46□□□□□ -0.25
PRPF3-207ENST00000496202 NINLQ9Y2I6 1382 aa13.45□□□□□ -0.26
PRPF3-207ENST00000496202 PXDNQ92626 1479 aa13.45□□□□□ -0.26
PRPF3-207ENST00000496202 PLEKHG3A1L390 1219 aa13.45□□□□□ -0.26
PRPF3-207ENST00000496202 KRT28Q7Z3Y7 464 aa13.45□□□□□ -0.26
PRPF3-207ENST00000496202 POLR3AO14802 1390 aaPredicted RBP13.45□□□□□ -0.26
PRPF3-207ENST00000496202 ACEP12821 1306 aa13.44□□□□□ -0.26
PRPF3-207ENST00000496202 SOS2Q07890 1332 aaPredicted RBP13.44□□□□□ -0.26
PRPF3-207ENST00000496202 LRRC59Q96AG4 307 aaKnown RBP13.44□□□□□ -0.26
PRPF3-207ENST00000496202 JCADQ9P266 1359 aa13.44□□□□□ -0.26
PRPF3-207ENST00000496202 AKAP12Q02952 1782 aa13.43□□□□□ -0.26
PRPF3-207ENST00000496202 HDGFL2Q7Z4V5 671 aaPredicted RBP13.43□□□□□ -0.26
PRPF3-207ENST00000496202 TNS3Q68CZ2 1445 aa13.42□□□□□ -0.26
PRPF3-207ENST00000496202 PAK3O75914 559 aaPredicted RBP13.42□□□□□ -0.26
PRPF3-207ENST00000496202 LMOD2Q6P5Q4 547 aa13.42□□□□□ -0.26
PRPF3-207ENST00000496202 TERF2IPQ9NYB0 399 aa13.42□□□□□ -0.26
PRPF3-207ENST00000496202 SHPRHQ149N8 1683 aa13.42□□□□□ -0.26
PRPF3-207ENST00000496202 SBNO1A3KN83 1393 aa13.42□□□□□ -0.26
PRPF3-207ENST00000496202 TRPM3Q9HCF6 1732 aaPredicted RBP13.42□□□□□ -0.26
PRPF3-207ENST00000496202 ARHGEF10O15013 1369 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms