RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 GUCA2AQ02747 115 aa12.19□□□□□ -0.46
CCDC39-207ENST00000495817 RNF19BQ6ZMZ0 732 aa12.19□□□□□ -0.46
CCDC39-207ENST00000495817 RIC3Q7Z5B4 369 aa12.19□□□□□ -0.46
CCDC39-207ENST00000495817 SPDYE5A6NIY4 337 aa12.18□□□□□ -0.46
CCDC39-207ENST00000495817 NDUFV2P19404 249 aa12.18□□□□□ -0.46
CCDC39-207ENST00000495817 GOPCQ9HD26 462 aa12.18□□□□□ -0.46
CCDC39-207ENST00000495817 CLK2P49760 499 aaKnown RBP12.17□□□□□ -0.46
CCDC39-207ENST00000495817 PRPF38BQ5VTL8 546 aaKnown RBP12.17□□□□□ -0.46
CCDC39-207ENST00000495817 RETREG3Q86VR2 466 aa12.17□□□□□ -0.46
CCDC39-207ENST00000495817 USB1Q9BQ65 265 aaKnown RBP12.17□□□□□ -0.46
CCDC39-207ENST00000495817 SLC6A16Q9GZN6 736 aa12.17□□□□□ -0.46
CCDC39-207ENST00000495817 PCDHGC3Q9UN70 934 aa12.17□□□□□ -0.46
CCDC39-207ENST00000495817 MTMR2Q13614 643 aa12.15□□□□□ -0.46
CCDC39-207ENST00000495817 SKIV2LQ15477 1246 aaKnown RBP12.15□□□□□ -0.46
CCDC39-207ENST00000495817 C6orf229H3BNL8 230 aa12.14□□□□□ -0.47
CCDC39-207ENST00000495817 PPP1R18Q6NYC8 613 aa12.14□□□□□ -0.47
CCDC39-207ENST00000495817 ZBTB3Q9H5J0 574 aa12.14□□□□□ -0.47
CCDC39-207ENST00000495817 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.14□□□□□ -0.47
CCDC39-207ENST00000495817 GTF3C3Q9Y5Q9 886 aa12.14□□□□□ -0.47
CCDC39-207ENST00000495817 RGS20O76081 388 aa12.13□□□□□ -0.47
CCDC39-207ENST00000495817 S1PR4O95977 384 aa12.13□□□□□ -0.47
CCDC39-207ENST00000495817 LIMD1Q9UGP4 676 aa12.13□□□□□ -0.47
CCDC39-207ENST00000495817 FAM160A2Q8N612 972 aaPredicted RBP12.12□□□□□ -0.47
CCDC39-207ENST00000495817 IL27Q8NEV9 243 aa12.12□□□□□ -0.47
CCDC39-207ENST00000495817 MMP16P51512 607 aa12.1□□□□□ -0.47
CCDC39-207ENST00000495817 ANKLE1Q8NAG6 615 aa12.1□□□□□ -0.47
CCDC39-207ENST00000495817 RNF223E7ERA6 249 aa12.09□□□□□ -0.47
CCDC39-207ENST00000495817 DXOO77932 396 aaKnown RBP12.09□□□□□ -0.47
CCDC39-207ENST00000495817 POLR3EQ9NVU0 708 aa12.09□□□□□ -0.47
CCDC39-207ENST00000495817 PCDHB15Q9Y5E8 787 aa12.09□□□□□ -0.47
CCDC39-207ENST00000495817 HRCP23327 699 aa12.08□□□□□ -0.48
CCDC39-207ENST00000495817 DESI1Q6ICB0 168 aa12.08□□□□□ -0.48
CCDC39-207ENST00000495817 SYMPKQ92797 1274 aaKnown RBP12.08□□□□□ -0.48
CCDC39-207ENST00000495817 LILRB3O75022 631 aa12.07□□□□□ -0.48
CCDC39-207ENST00000495817 JUNDP17535 347 aa12.07□□□□□ -0.48
CCDC39-207ENST00000495817 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.07□□□□□ -0.48
CCDC39-207ENST00000495817 PRDM9Q9NQV7 894 aa12.07□□□□□ -0.48
CCDC39-207ENST00000495817 CSPP1Q1MSJ5 1256 aa12.06□□□□□ -0.48
CCDC39-207ENST00000495817 ERICH6Q7L0X2 663 aa12.06□□□□□ -0.48
CCDC39-207ENST00000495817 PCMTD1Q96MG8 357 aaPredicted RBP12.06□□□□□ -0.48
CCDC39-207ENST00000495817 QPCTQ16769 361 aa12.05□□□□□ -0.48
CCDC39-207ENST00000495817 PRR7Q8TB68 274 aa12.05□□□□□ -0.48
CCDC39-207ENST00000495817 NUTM2BA6NNL0 878 aaPredicted RBP12.04□□□□□ -0.48
CCDC39-207ENST00000495817 NUTM2EB1AL46 878 aaPredicted RBP12.04□□□□□ -0.48
CCDC39-207ENST00000495817 NUTM2DQ5VT03 806 aaPredicted RBP12.04□□□□□ -0.48
CCDC39-207ENST00000495817 NUTM2AQ8IVF1 878 aaPredicted RBP12.04□□□□□ -0.48
CCDC39-207ENST00000495817 CABLES1Q8TDN4 633 aa12.03□□□□□ -0.48
CCDC39-207ENST00000495817 PPP2R2DQ66LE6 453 aa12.02□□□□□ -0.49
CCDC39-207ENST00000495817 FCF1Q9Y324 198 aaKnown RBP12.02□□□□□ -0.49
CCDC39-207ENST00000495817 CFAP99D6REC4 459 aa12.01□□□□□ -0.49
CCDC39-207ENST00000495817 PTPRNQ16849 979 aa12.01□□□□□ -0.49
CCDC39-207ENST00000495817 V9GY48 417 aaPredicted RBP12.01□□□□□ -0.49
CCDC39-207ENST00000495817 PROCA1Q8NCQ7 364 aaPredicted RBP12□□□□□ -0.49
CCDC39-207ENST00000495817 HELBQ8NG08 1087 aaPredicted RBP12□□□□□ -0.49
CCDC39-207ENST00000495817 ATP1B4Q9UN42 357 aaPredicted RBP12□□□□□ -0.49
CCDC39-207ENST00000495817 PPEF1O14829 653 aaPredicted RBP11.99□□□□□ -0.49
CCDC39-207ENST00000495817 CCNYL3P0C7X3 344 aa11.97□□□□□ -0.49
CCDC39-207ENST00000495817 RTL5Q5HYW3 569 aaPredicted RBP11.97□□□□□ -0.49
CCDC39-207ENST00000495817 NUDT12Q9BQG2 462 aa11.97□□□□□ -0.49
CCDC39-207ENST00000495817 RPIAP49247 311 aa11.96□□□□□ -0.49
CCDC39-207ENST00000495817 PRKD2Q9BZL6 878 aa11.96□□□□□ -0.49
CCDC39-207ENST00000495817 LYPD8Q6UX82 237 aa11.95□□□□□ -0.5
CCDC39-207ENST00000495817 TIMELESSQ9UNS1 1208 aa11.95□□□□□ -0.5
CCDC39-207ENST00000495817 SLC19A1P41440 591 aa11.94□□□□□ -0.5
CCDC39-207ENST00000495817 PLA2G2CQ5R387 149 aa11.93□□□□□ -0.5
CCDC39-207ENST00000495817 ZBTB24O43167 697 aaPredicted RBP11.92□□□□□ -0.5
CCDC39-207ENST00000495817 TSC1Q92574 1164 aa11.92□□□□□ -0.5
CCDC39-207ENST00000495817 RFC5P40937 340 aa11.91□□□□□ -0.5
CCDC39-207ENST00000495817 TMEM259Q4ZIN3 620 aa11.9□□□□□ -0.5
CCDC39-207ENST00000495817 CCDC24Q8N4L8 307 aa11.9□□□□□ -0.5
CCDC39-207ENST00000495817 EMID1Q96A84 441 aaPredicted RBP11.9□□□□□ -0.5
CCDC39-207ENST00000495817 EVA1BQ9NVM1 165 aa11.9□□□□□ -0.5
CCDC39-207ENST00000495817 FBXO31Q5XUX0 539 aaPredicted RBP11.89□□□□□ -0.51
CCDC39-207ENST00000495817 LIAT1Q6ZQX7 453 aa11.89□□□□□ -0.51
CCDC39-207ENST00000495817 KCNH2Q12809 1159 aa11.88□□□□□ -0.51
CCDC39-207ENST00000495817 SPRYD7Q5W111 196 aa11.88□□□□□ -0.51
CCDC39-207ENST00000495817 CD2BP2O95400 341 aaKnown RBP11.87□□□□□ -0.51
CCDC39-207ENST00000495817 F12P00748 615 aaPredicted RBP11.87□□□□□ -0.51
CCDC39-207ENST00000495817 PER1O15534 1290 aaPredicted RBP11.86□□□□□ -0.51
CCDC39-207ENST00000495817 AP1G2O75843 785 aa11.86□□□□□ -0.51
CCDC39-207ENST00000495817 TRIM32Q13049 653 aa11.86□□□□□ -0.51
CCDC39-207ENST00000495817 ZNF598Q86UK7 904 aaKnown RBP11.85□□□□□ -0.51
CCDC39-207ENST00000495817 CTDSPL2Q05D32 466 aa11.84□□□□□ -0.51
CCDC39-207ENST00000495817 UNC93B1Q9H1C4 597 aa11.84□□□□□ -0.51
CCDC39-207ENST00000495817 USP17L8P0C7I0 530 aa11.83□□□□□ -0.52
CCDC39-207ENST00000495817 CTHP32929 405 aa11.83□□□□□ -0.52
CCDC39-207ENST00000495817 ZNF697Q5TEC3 545 aa11.83□□□□□ -0.52
CCDC39-207ENST00000495817 BANK1Q8NDB2 785 aa11.83□□□□□ -0.52
CCDC39-207ENST00000495817 SOCS7O14512 581 aa11.82□□□□□ -0.52
CCDC39-207ENST00000495817 WNT7BP56706 349 aa11.82□□□□□ -0.52
CCDC39-207ENST00000495817 MAP10Q9P2G4 905 aa11.82□□□□□ -0.52
CCDC39-207ENST00000495817 PTCRAQ6ISU1 281 aaPredicted RBP11.81□□□□□ -0.52
CCDC39-207ENST00000495817 ARMC2Q8NEN0 867 aa11.81□□□□□ -0.52
CCDC39-207ENST00000495817 C14orf37Q86TY3 774 aa11.8□□□□□ -0.52
CCDC39-207ENST00000495817 LRRN4Q8WUT4 740 aa11.78□□□□□ -0.52
CCDC39-207ENST00000495817 APBB1O00213 710 aa11.77□□□□□ -0.53
CCDC39-207ENST00000495817 PRR20EP86478 221 aa11.77□□□□□ -0.53
CCDC39-207ENST00000495817 PRR20CP86479 221 aa11.77□□□□□ -0.53
CCDC39-207ENST00000495817 PRR20DP86480 221 aa11.77□□□□□ -0.53
CCDC39-207ENST00000495817 PRR20BP86481 221 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms