RNA–Protein interactions for RNA: ENST00000495122.1

CBX4-204, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 490 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-204ENST00000495122 RGS17Q9UGC6 210 aaPredicted RBP22.72■■□□□ 1.23
CBX4-204ENST00000495122 LRP6O75581 1613 aa22.71■■□□□ 1.23
CBX4-204ENST00000495122 DDX10Q13206 875 aaKnown RBP22.69■■□□□ 1.22
CBX4-204ENST00000495122 BRINP3Q76B58 766 aa22.68■■□□□ 1.22
CBX4-204ENST00000495122 CDC42BPGQ6DT37 1551 aa22.67■■□□□ 1.22
CBX4-204ENST00000495122 ROBO2Q9HCK4 1378 aa22.67■■□□□ 1.22
CBX4-204ENST00000495122 TRPM1Q7Z4N2 1603 aa22.65■■□□□ 1.22
CBX4-204ENST00000495122 USP47Q96K76 1375 aa22.63■■□□□ 1.21
CBX4-204ENST00000495122 CCDC7Q96M83 1385 aa22.63■■□□□ 1.21
CBX4-204ENST00000495122 CCER2I3L3R5 266 aa22.63■■□□□ 1.21
CBX4-204ENST00000495122 PIK3C2GO75747 1445 aa22.63■■□□□ 1.21
CBX4-204ENST00000495122 RGPD8O14715 1765 aaPredicted RBP22.63■■□□□ 1.21
CBX4-204ENST00000495122 GPRASP1Q5JY77 1395 aa22.63■■□□□ 1.21
CBX4-204ENST00000495122 FMN2Q9NZ56 1722 aa22.62■■□□□ 1.21
CBX4-204ENST00000495122 SPATA31A6Q5VVP1 1343 aa22.62■■□□□ 1.21
CBX4-204ENST00000495122 C1orf167Q5SNV9 1468 aa22.62■■□□□ 1.21
CBX4-204ENST00000495122 ADGRF5Q8IZF2 1346 aa22.61■■□□□ 1.21
CBX4-204ENST00000495122 TECPR2O15040 1411 aa22.61■■□□□ 1.21
CBX4-204ENST00000495122 ANP32CO43423 234 aa22.61■■□□□ 1.21
CBX4-204ENST00000495122 WASHC2AQ641Q2 1341 aa22.6■■□□□ 1.21
CBX4-204ENST00000495122 DCAF11Q8TEB1 546 aa22.6■■□□□ 1.21
CBX4-204ENST00000495122 HIRIP3Q9BW71 556 aaPredicted RBP22.6■■□□□ 1.21
CBX4-204ENST00000495122 MYOM2P54296 1465 aa22.6■■□□□ 1.21
CBX4-204ENST00000495122 POTEAQ6S8J7 498 aa22.59■■□□□ 1.21
CBX4-204ENST00000495122 MARF1Q9Y4F3 1742 aaKnown RBP22.59■■□□□ 1.21
CBX4-204ENST00000495122 NRXN1Q9ULB1 1477 aa22.59■■□□□ 1.21
CBX4-204ENST00000495122 COL22A1Q8NFW1 1626 aaPredicted RBP22.57■■□□□ 1.2
CBX4-204ENST00000495122 RGL3Q3MIN7 710 aa22.57■■□□□ 1.2
CBX4-204ENST00000495122 ROCK2O75116 1388 aaKnown RBP22.55■■□□□ 1.2
CBX4-204ENST00000495122 LRPPRCP42704 1394 aaKnown RBP22.54■■□□□ 1.2
CBX4-204ENST00000495122 CARD11Q9BXL7 1154 aa22.54■■□□□ 1.2
CBX4-204ENST00000495122 KIF1AQ12756 1690 aa22.54■■□□□ 1.2
CBX4-204ENST00000495122 KIAA1210Q9ULL0 1709 aa22.52■■□□□ 1.2
CBX4-204ENST00000495122 PNPLA6Q8IY17 1366 aa22.51■■□□□ 1.19
CBX4-204ENST00000495122 DDX17Q92841 729 aaKnown RBP22.51■■□□□ 1.19
CBX4-204ENST00000495122 YTHDC2Q9H6S0 1430 aaKnown RBP22.5■■□□□ 1.19
CBX4-204ENST00000495122 KIF7Q2M1P5 1343 aa22.5■■□□□ 1.19
CBX4-204ENST00000495122 ABCC11Q96J66 1382 aa22.5■■□□□ 1.19
CBX4-204ENST00000495122 MEX3CQ5U5Q3 659 aaKnown RBP22.48■■□□□ 1.19
CBX4-204ENST00000495122 LRRC59Q96AG4 307 aaKnown RBP22.48■■□□□ 1.19
CBX4-204ENST00000495122 KDM2AQ9Y2K7 1162 aa22.48■■□□□ 1.19
CBX4-204ENST00000495122 ORAI2Q96SN7 254 aa22.46■■□□□ 1.19
CBX4-204ENST00000495122 PLEKHH1Q9ULM0 1364 aa22.46■■□□□ 1.19
CBX4-204ENST00000495122 PXDNQ92626 1479 aa22.46■■□□□ 1.19
CBX4-204ENST00000495122 TMEM132EQ6IEE7 984 aa22.45■■□□□ 1.18
CBX4-204ENST00000495122 STK26Q9P289 416 aa22.45■■□□□ 1.18
CBX4-204ENST00000495122 SOS2Q07890 1332 aaPredicted RBP22.45■■□□□ 1.18
CBX4-204ENST00000495122 DLC1Q96QB1 1528 aa22.45■■□□□ 1.18
CBX4-204ENST00000495122 ADGRB1O14514 1584 aa22.45■■□□□ 1.18
CBX4-204ENST00000495122 ADGRB2O60241 1585 aa22.45■■□□□ 1.18
CBX4-204ENST00000495122 ARHGEF28Q8N1W1 1705 aaKnown RBP22.44■■□□□ 1.18
CBX4-204ENST00000495122 USP32Q8NFA0 1604 aa22.43■■□□□ 1.18
CBX4-204ENST00000495122 NUTM2BA6NNL0 878 aaPredicted RBP22.43■■□□□ 1.18
CBX4-204ENST00000495122 NUTM2EB1AL46 878 aaPredicted RBP22.43■■□□□ 1.18
CBX4-204ENST00000495122 NUTM2AQ8IVF1 878 aaPredicted RBP22.43■■□□□ 1.18
CBX4-204ENST00000495122 YTHDC1Q96MU7 727 aaKnown RBP22.43■■□□□ 1.18
CBX4-204ENST00000495122 C11orf95C9JLR9 678 aaPredicted RBP22.42■■□□□ 1.18
CBX4-204ENST00000495122 ZNF772Q68DY9 489 aaPredicted RBP22.42■■□□□ 1.18
CBX4-204ENST00000495122 WAPLQ7Z5K2 1190 aa22.42■■□□□ 1.18
CBX4-204ENST00000495122 C14orf93Q9H972 538 aaKnown RBP22.42■■□□□ 1.18
CBX4-204ENST00000495122 ABCA3Q99758 1704 aa22.42■■□□□ 1.18
CBX4-204ENST00000495122 CDK12Q9NYV4 1490 aaPredicted RBP22.39■■□□□ 1.17
CBX4-204ENST00000495122 AFF2P51816 1311 aa22.38■■□□□ 1.17
CBX4-204ENST00000495122 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.38■■□□□ 1.17
CBX4-204ENST00000495122 CFAP70Q5T0N1 1121 aa22.38■■□□□ 1.17
CBX4-204ENST00000495122 SIRT1Q96EB6 747 aa22.37■■□□□ 1.17
CBX4-204ENST00000495122 NPHP3Q7Z494 1330 aa22.36■■□□□ 1.17
CBX4-204ENST00000495122 ITSN1Q15811 1721 aa22.36■■□□□ 1.17
CBX4-204ENST00000495122 ST20-MTHFSA0A0A6YYL1 179 aa22.35■■□□□ 1.17
CBX4-204ENST00000495122 SLC24A1O60721 1099 aa22.35■■□□□ 1.17
CBX4-204ENST00000495122 ESCO1Q5FWF5 840 aa22.35■■□□□ 1.17
CBX4-204ENST00000495122 KTN1Q86UP2 1357 aaKnown RBP22.35■■□□□ 1.17
CBX4-204ENST00000495122 TRPM3Q9HCF6 1732 aaPredicted RBP22.34■■□□□ 1.17
CBX4-204ENST00000495122 EIF3AQ14152 1382 aaKnown RBP22.33■■□□□ 1.17
CBX4-204ENST00000495122 C8orf37Q96NL8 207 aa22.32■■□□□ 1.16
CBX4-204ENST00000495122 NUTM2FA1L443 756 aa22.31■■□□□ 1.16
CBX4-204ENST00000495122 NBPF1Q3BBV0 1214 aa22.3■■□□□ 1.16
CBX4-204ENST00000495122 PRKRIP1Q9H875 184 aaPredicted RBP22.3■■□□□ 1.16
CBX4-204ENST00000495122 PLCH1Q4KWH8 1693 aa22.3■■□□□ 1.16
CBX4-204ENST00000495122 ALS2Q96Q42 1657 aa22.29■■□□□ 1.16
CBX4-204ENST00000495122 FOXO3O43524 673 aa22.28■■□□□ 1.16
CBX4-204ENST00000495122 ADAMTS2O95450 1211 aa22.28■■□□□ 1.16
CBX4-204ENST00000495122 RXRBP28702 533 aa22.28■■□□□ 1.16
CBX4-204ENST00000495122 RGS12O14924 1447 aa22.28■■□□□ 1.16
CBX4-204ENST00000495122 CRYBG1Q9Y4K1 1723 aa22.28■■□□□ 1.16
CBX4-204ENST00000495122 ANKARQ7Z5J8 1434 aa22.27■■□□□ 1.16
CBX4-204ENST00000495122 PRAM1Q96QH2 718 aa22.27■■□□□ 1.16
CBX4-204ENST00000495122 NWD2Q9ULI1 1742 aa22.27■■□□□ 1.16
CBX4-204ENST00000495122 XPCQ01831 940 aaPredicted RBP22.26■■□□□ 1.15
CBX4-204ENST00000495122 TOPAZ1Q8N9V7 1692 aa22.26■■□□□ 1.15
CBX4-204ENST00000495122 TULP4Q9NRJ4 1543 aa22.26■■□□□ 1.15
CBX4-204ENST00000495122 TMF1P82094 1093 aa22.25■■□□□ 1.15
CBX4-204ENST00000495122 TESK2Q96S53 571 aa22.25■■□□□ 1.15
CBX4-204ENST00000495122 CDCA8Q53HL2 280 aa22.24■■□□□ 1.15
CBX4-204ENST00000495122 TNS3Q68CZ2 1445 aa22.23■■□□□ 1.15
CBX4-204ENST00000495122 SAFB2Q14151 953 aaKnown RBP eCLIP22.23■■□□□ 1.15
CBX4-204ENST00000495122 NGLY1Q96IV0 654 aa22.23■■□□□ 1.15
CBX4-204ENST00000495122 BRWD3Q6RI45 1802 aa22.22■■□□□ 1.15
CBX4-204ENST00000495122 SPATA31A3Q5VYP0 1347 aa22.22■■□□□ 1.15
CBX4-204ENST00000495122 ATRNO75882 1429 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms