RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 LRRC7Q96NW7 1537 aa20.86■□□□□ 0.93
ACTB-213ENST00000493945 DCCP43146 1447 aa20.86■□□□□ 0.93
ACTB-213ENST00000493945 LTBP4Q8N2S1 1624 aa20.86■□□□□ 0.93
ACTB-213ENST00000493945 CDC42BPGQ6DT37 1551 aa20.85■□□□□ 0.93
ACTB-213ENST00000493945 EVC2Q86UK5 1308 aa20.85■□□□□ 0.93
ACTB-213ENST00000493945 NALCNQ8IZF0 1738 aa20.85■□□□□ 0.93
ACTB-213ENST00000493945 HSPA5P11021 654 aaKnown RBP20.85■□□□□ 0.93
ACTB-213ENST00000493945 TMF1P82094 1093 aa20.85■□□□□ 0.93
ACTB-213ENST00000493945 SAFB2Q14151 953 aaKnown RBP eCLIP20.85■□□□□ 0.93
ACTB-213ENST00000493945 IQSEC2Q5JU85 1478 aa20.84■□□□□ 0.93
ACTB-213ENST00000493945 WAPLQ7Z5K2 1190 aa20.84■□□□□ 0.93
ACTB-213ENST00000493945 C19orf44Q9H6X5 657 aa20.82■□□□□ 0.92
ACTB-213ENST00000493945 PLEKHH1Q9ULM0 1364 aa20.82■□□□□ 0.92
ACTB-213ENST00000493945 MINK1Q8N4C8 1332 aaPredicted RBP20.81■□□□□ 0.92
ACTB-213ENST00000493945 ATF3P18847 181 aa20.81■□□□□ 0.92
ACTB-213ENST00000493945 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.81■□□□□ 0.92
ACTB-213ENST00000493945 CADPS2Q86UW7 1296 aa20.8■□□□□ 0.92
ACTB-213ENST00000493945 XIRP1Q702N8 1843 aaKnown RBP20.8■□□□□ 0.92
ACTB-213ENST00000493945 ITSN1Q15811 1721 aa20.78■□□□□ 0.92
ACTB-213ENST00000493945 ATAD2Q6PL18 1390 aa20.77■□□□□ 0.92
ACTB-213ENST00000493945 SRPK2P78362 688 aaKnown RBP20.77■□□□□ 0.92
ACTB-213ENST00000493945 FMN2Q9NZ56 1722 aa20.77■□□□□ 0.92
ACTB-213ENST00000493945 WASLO00401 505 aaPredicted RBP20.76■□□□□ 0.91
ACTB-213ENST00000493945 PUS7Q96PZ0 661 aaKnown RBP20.76■□□□□ 0.91
ACTB-213ENST00000493945 TULP4Q9NRJ4 1543 aa20.76■□□□□ 0.91
ACTB-213ENST00000493945 ANKARQ7Z5J8 1434 aa20.76■□□□□ 0.91
ACTB-213ENST00000493945 TESK2Q96S53 571 aa20.75■□□□□ 0.91
ACTB-213ENST00000493945 HIRIP3Q9BW71 556 aaPredicted RBP20.75■□□□□ 0.91
ACTB-213ENST00000493945 NINLQ9Y2I6 1382 aa20.73■□□□□ 0.91
ACTB-213ENST00000493945 RBM33Q96EV2 1170 aaKnown RBP20.71■□□□□ 0.91
ACTB-213ENST00000493945 CDK19Q9BWU1 502 aa20.71■□□□□ 0.91
ACTB-213ENST00000493945 TOM1O60784 492 aa20.69■□□□□ 0.9
ACTB-213ENST00000493945 CERKQ8TCT0 537 aa20.69■□□□□ 0.9
ACTB-213ENST00000493945 KIF1AQ12756 1690 aa20.69■□□□□ 0.9
ACTB-213ENST00000493945 DISP3Q9P2K9 1392 aa20.68■□□□□ 0.9
ACTB-213ENST00000493945 ATP7BP35670 1465 aa20.67■□□□□ 0.9
ACTB-213ENST00000493945 POLR3GLQ9BT43 218 aa20.66■□□□□ 0.9
ACTB-213ENST00000493945 CCDC61Q9Y6R9 512 aa20.66■□□□□ 0.9
ACTB-213ENST00000493945 TOPAZ1Q8N9V7 1692 aa20.66■□□□□ 0.9
ACTB-213ENST00000493945 MST1RQ04912 1400 aa20.65■□□□□ 0.9
ACTB-213ENST00000493945 ZNF316A6NFI3 1004 aaPredicted RBP20.65■□□□□ 0.9
ACTB-213ENST00000493945 CABP2Q9NPB3 220 aa20.65■□□□□ 0.9
ACTB-213ENST00000493945 C1orf167Q5SNV9 1468 aa20.64■□□□□ 0.89
ACTB-213ENST00000493945 NUDT16Q96DE0 195 aaKnown RBP20.64■□□□□ 0.89
ACTB-213ENST00000493945 CCDC7Q96M83 1385 aa20.63■□□□□ 0.89
ACTB-213ENST00000493945 PPIP5K1Q6PFW1 1433 aa20.62■□□□□ 0.89
ACTB-213ENST00000493945 USP32Q8NFA0 1604 aa20.62■□□□□ 0.89
ACTB-213ENST00000493945 RGPD8O14715 1765 aaPredicted RBP20.62■□□□□ 0.89
ACTB-213ENST00000493945 KIF7Q2M1P5 1343 aa20.61■□□□□ 0.89
ACTB-213ENST00000493945 TMC1Q8TDI8 760 aa20.61■□□□□ 0.89
ACTB-213ENST00000493945 TERF2IPQ9NYB0 399 aa20.61■□□□□ 0.89
ACTB-213ENST00000493945 SLAIN2Q9P270 581 aa20.61■□□□□ 0.89
ACTB-213ENST00000493945 NUTM2FA1L443 756 aa20.6■□□□□ 0.89
ACTB-213ENST00000493945 ESCO1Q5FWF5 840 aa20.6■□□□□ 0.89
ACTB-213ENST00000493945 HDGFL2Q7Z4V5 671 aaPredicted RBP20.6■□□□□ 0.89
ACTB-213ENST00000493945 UBAP1LF5GYI3 381 aa20.59■□□□□ 0.89
ACTB-213ENST00000493945 MYOM1P52179 1685 aa20.58■□□□□ 0.89
ACTB-213ENST00000493945 PHF8Q9UPP1 1060 aa20.58■□□□□ 0.89
ACTB-213ENST00000493945 NGDNQ8NEJ9 315 aaKnown RBP20.57■□□□□ 0.88
ACTB-213ENST00000493945 PRR36Q9H6K5 1346 aa20.56■□□□□ 0.88
ACTB-213ENST00000493945 BRD4O60885 1362 aaPredicted RBP20.56■□□□□ 0.88
ACTB-213ENST00000493945 WASHC2AQ641Q2 1341 aa20.55■□□□□ 0.88
ACTB-213ENST00000493945 NPHP3Q7Z494 1330 aa20.55■□□□□ 0.88
ACTB-213ENST00000493945 ROBO1Q9Y6N7 1651 aa20.55■□□□□ 0.88
ACTB-213ENST00000493945 PLEKHG3A1L390 1219 aa20.55■□□□□ 0.88
ACTB-213ENST00000493945 ZNF692Q9BU19 519 aaPredicted RBP20.55■□□□□ 0.88
ACTB-213ENST00000493945 ANKRD36BQ8N2N9 1353 aa20.55■□□□□ 0.88
ACTB-213ENST00000493945 SCAF1Q9H7N4 1312 aaKnown RBP20.54■□□□□ 0.88
ACTB-213ENST00000493945 AKAP12Q02952 1782 aa20.54■□□□□ 0.88
ACTB-213ENST00000493945 CABP1Q9NZU7 370 aa20.54■□□□□ 0.88
ACTB-213ENST00000493945 POLR3AO14802 1390 aaPredicted RBP20.52■□□□□ 0.88
ACTB-213ENST00000493945 PSME1Q06323 249 aa20.52■□□□□ 0.88
ACTB-213ENST00000493945 MON2Q7Z3U7 1717 aa20.52■□□□□ 0.88
ACTB-213ENST00000493945 NHSL1Q5SYE7 1610 aa20.51■□□□□ 0.87
ACTB-213ENST00000493945 KTN1Q86UP2 1357 aaKnown RBP20.5■□□□□ 0.87
ACTB-213ENST00000493945 C11orf95C9JLR9 678 aaPredicted RBP20.5■□□□□ 0.87
ACTB-213ENST00000493945 BRINP3Q76B58 766 aa20.5■□□□□ 0.87
ACTB-213ENST00000493945 PMFBP1Q8TBY8 1022 aa20.5■□□□□ 0.87
ACTB-213ENST00000493945 ACEP12821 1306 aa20.5■□□□□ 0.87
ACTB-213ENST00000493945 ORAI2Q96SN7 254 aa20.49■□□□□ 0.87
ACTB-213ENST00000493945 SLC12A5Q9H2X9 1139 aa20.49■□□□□ 0.87
ACTB-213ENST00000493945 AHDC1Q5TGY3 1603 aaPredicted RBP20.49■□□□□ 0.87
ACTB-213ENST00000493945 A0A1W2PP64 1363 aa20.48■□□□□ 0.87
ACTB-213ENST00000493945 EDC4Q6P2E9 1401 aaKnown RBP20.48■□□□□ 0.87
ACTB-213ENST00000493945 PIP4K2BP78356 416 aa20.48■□□□□ 0.87
ACTB-213ENST00000493945 USP6P35125 1406 aa20.47■□□□□ 0.87
ACTB-213ENST00000493945 CPSF1Q10570 1443 aaKnown RBP20.47■□□□□ 0.87
ACTB-213ENST00000493945 PHLPP1O60346 1717 aa20.45■□□□□ 0.86
ACTB-213ENST00000493945 FOXO3O43524 673 aa20.45■□□□□ 0.86
ACTB-213ENST00000493945 KNSTRNQ9Y448 316 aa20.45■□□□□ 0.86
ACTB-213ENST00000493945 TTC21AQ8NDW8 1320 aa20.45■□□□□ 0.86
ACTB-213ENST00000493945 PANK3Q9H999 370 aa20.44■□□□□ 0.86
ACTB-213ENST00000493945 CD163L1Q9NR16 1453 aa20.43■□□□□ 0.86
ACTB-213ENST00000493945 NRKQ7Z2Y5 1582 aa20.43■□□□□ 0.86
ACTB-213ENST00000493945 CGNL1Q0VF96 1302 aa20.43■□□□□ 0.86
ACTB-213ENST00000493945 KIF20BQ96Q89 1820 aa20.43■□□□□ 0.86
ACTB-213ENST00000493945 SBNO1A3KN83 1393 aa20.43■□□□□ 0.86
ACTB-213ENST00000493945 NSD3Q9BZ95 1437 aa20.43■□□□□ 0.86
ACTB-213ENST00000493945 KRT28Q7Z3Y7 464 aa20.42■□□□□ 0.86
ACTB-213ENST00000493945 ARHGEF10O15013 1369 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms