RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 C11orf95C9JLR9 678 aaPredicted RBP27.09■■□□□ 1.93
USP39-218ENST00000493829 POLR3GLQ9BT43 218 aa27.09■■□□□ 1.93
USP39-218ENST00000493829 TULP4Q9NRJ4 1543 aa27.08■■□□□ 1.93
USP39-218ENST00000493829 SBNO2Q9Y2G9 1366 aa27.07■■□□□ 1.92
USP39-218ENST00000493829 SIRT1Q96EB6 747 aa27.07■■□□□ 1.92
USP39-218ENST00000493829 NALCNQ8IZF0 1738 aa27.06■■□□□ 1.92
USP39-218ENST00000493829 TMF1P82094 1093 aa27.06■■□□□ 1.92
USP39-218ENST00000493829 PROSER2Q86WR7 435 aaPredicted RBP27.04■■□□□ 1.92
USP39-218ENST00000493829 KIF7Q2M1P5 1343 aa27.04■■□□□ 1.92
USP39-218ENST00000493829 WASHC2AQ641Q2 1341 aa27.03■■□□□ 1.92
USP39-218ENST00000493829 C14orf37Q86TY3 774 aa27.01■■□□□ 1.92
USP39-218ENST00000493829 ADGRB2O60241 1585 aa27.01■■□□□ 1.92
USP39-218ENST00000493829 CCDC7Q96M83 1385 aa27.01■■□□□ 1.91
USP39-218ENST00000493829 EVC2Q86UK5 1308 aa26.99■■□□□ 1.91
USP39-218ENST00000493829 TMEM94Q12767 1356 aa26.98■■□□□ 1.91
USP39-218ENST00000493829 ADGRL3Q9HAR2 1447 aa26.97■■□□□ 1.91
USP39-218ENST00000493829 LRRC7Q96NW7 1537 aa26.96■■□□□ 1.91
USP39-218ENST00000493829 XIRP1Q702N8 1843 aaKnown RBP26.96■■□□□ 1.91
USP39-218ENST00000493829 SRPK2P78362 688 aaKnown RBP26.96■■□□□ 1.91
USP39-218ENST00000493829 CABP2Q9NPB3 220 aa26.96■■□□□ 1.91
USP39-218ENST00000493829 CDK19Q9BWU1 502 aa26.95■■□□□ 1.9
USP39-218ENST00000493829 CDC42BPGQ6DT37 1551 aa26.93■■□□□ 1.9
USP39-218ENST00000493829 WASLO00401 505 aaPredicted RBP26.93■■□□□ 1.9
USP39-218ENST00000493829 SLC24A1O60721 1099 aa26.92■■□□□ 1.9
USP39-218ENST00000493829 MYOM1P52179 1685 aa26.92■■□□□ 1.9
USP39-218ENST00000493829 NUTM2FA1L443 756 aa26.92■■□□□ 1.9
USP39-218ENST00000493829 CDCA8Q53HL2 280 aa26.92■■□□□ 1.9
USP39-218ENST00000493829 LTBP4Q8N2S1 1624 aa26.91■■□□□ 1.9
USP39-218ENST00000493829 FMN2Q9NZ56 1722 aa26.9■■□□□ 1.9
USP39-218ENST00000493829 DDX10Q13206 875 aaKnown RBP26.87■■□□□ 1.89
USP39-218ENST00000493829 USP32Q8NFA0 1604 aa26.86■■□□□ 1.89
USP39-218ENST00000493829 ATP7BP35670 1465 aa26.86■■□□□ 1.89
USP39-218ENST00000493829 TMC1Q8TDI8 760 aa26.85■■□□□ 1.89
USP39-218ENST00000493829 NCOA3Q9Y6Q9 1424 aa26.84■■□□□ 1.89
USP39-218ENST00000493829 PRR36Q9H6K5 1346 aa26.84■■□□□ 1.89
USP39-218ENST00000493829 MSH6P52701 1360 aa26.84■■□□□ 1.89
USP39-218ENST00000493829 ATAD2Q6PL18 1390 aa26.84■■□□□ 1.89
USP39-218ENST00000493829 RGPD8O14715 1765 aaPredicted RBP26.84■■□□□ 1.89
USP39-218ENST00000493829 TOPAZ1Q8N9V7 1692 aa26.83■■□□□ 1.89
USP39-218ENST00000493829 NUDT16Q96DE0 195 aaKnown RBP26.82■■□□□ 1.88
USP39-218ENST00000493829 C19orf44Q9H6X5 657 aa26.82■■□□□ 1.88
USP39-218ENST00000493829 ITSN1Q15811 1721 aa26.8■■□□□ 1.88
USP39-218ENST00000493829 PPIP5K1Q6PFW1 1433 aa26.79■■□□□ 1.88
USP39-218ENST00000493829 ATF3P18847 181 aa26.79■■□□□ 1.88
USP39-218ENST00000493829 DCCP43146 1447 aa26.78■■□□□ 1.88
USP39-218ENST00000493829 SLC12A5Q9H2X9 1139 aa26.78■■□□□ 1.88
USP39-218ENST00000493829 ANKARQ7Z5J8 1434 aa26.77■■□□□ 1.88
USP39-218ENST00000493829 PUS7Q96PZ0 661 aaKnown RBP26.77■■□□□ 1.88
USP39-218ENST00000493829 CABP1Q9NZU7 370 aa26.76■■□□□ 1.87
USP39-218ENST00000493829 MST1RQ04912 1400 aa26.74■■□□□ 1.87
USP39-218ENST00000493829 CCDC61Q9Y6R9 512 aa26.73■■□□□ 1.87
USP39-218ENST00000493829 PANK3Q9H999 370 aa26.73■■□□□ 1.87
USP39-218ENST00000493829 CADPS2Q86UW7 1296 aa26.72■■□□□ 1.87
USP39-218ENST00000493829 NINLQ9Y2I6 1382 aa26.72■■□□□ 1.87
USP39-218ENST00000493829 C1orf167Q5SNV9 1468 aa26.71■■□□□ 1.87
USP39-218ENST00000493829 PMFBP1Q8TBY8 1022 aa26.7■■□□□ 1.87
USP39-218ENST00000493829 CD163L1Q9NR16 1453 aa26.7■■□□□ 1.86
USP39-218ENST00000493829 A0A1W2PP64 1363 aa26.69■■□□□ 1.86
USP39-218ENST00000493829 ESCO1Q5FWF5 840 aa26.69■■□□□ 1.86
USP39-218ENST00000493829 ANKRD36BQ8N2N9 1353 aa26.68■■□□□ 1.86
USP39-218ENST00000493829 DIEXFQ68CQ4 756 aaKnown RBP26.67■■□□□ 1.86
USP39-218ENST00000493829 ORAI2Q96SN7 254 aa26.67■■□□□ 1.86
USP39-218ENST00000493829 AKAP12Q02952 1782 aa26.67■■□□□ 1.86
USP39-218ENST00000493829 CNGB1Q14028 1251 aaPredicted RBP26.66■■□□□ 1.86
USP39-218ENST00000493829 NSD3Q9BZ95 1437 aa26.64■■□□□ 1.86
USP39-218ENST00000493829 HDGFL2Q7Z4V5 671 aaPredicted RBP26.64■■□□□ 1.86
USP39-218ENST00000493829 TERF2IPQ9NYB0 399 aa26.64■■□□□ 1.86
USP39-218ENST00000493829 PHF8Q9UPP1 1060 aa26.64■■□□□ 1.86
USP39-218ENST00000493829 ACEP12821 1306 aa26.64■■□□□ 1.86
USP39-218ENST00000493829 KIF1AQ12756 1690 aa26.63■■□□□ 1.85
USP39-218ENST00000493829 MON2Q7Z3U7 1717 aa26.63■■□□□ 1.85
USP39-218ENST00000493829 NGDNQ8NEJ9 315 aaKnown RBP26.63■■□□□ 1.85
USP39-218ENST00000493829 PLEKHG3A1L390 1219 aa26.62■■□□□ 1.85
USP39-218ENST00000493829 CARD14Q9BXL6 1004 aa26.62■■□□□ 1.85
USP39-218ENST00000493829 KTN1Q86UP2 1357 aaKnown RBP26.62■■□□□ 1.85
USP39-218ENST00000493829 CPSF1Q10570 1443 aaKnown RBP26.61■■□□□ 1.85
USP39-218ENST00000493829 SLAIN2Q9P270 581 aa26.6■■□□□ 1.85
USP39-218ENST00000493829 POLR3AO14802 1390 aaPredicted RBP26.59■■□□□ 1.85
USP39-218ENST00000493829 NRKQ7Z2Y5 1582 aa26.58■■□□□ 1.85
USP39-218ENST00000493829 KNSTRNQ9Y448 316 aa26.57■■□□□ 1.84
USP39-218ENST00000493829 CERKQ8TCT0 537 aa26.57■■□□□ 1.84
USP39-218ENST00000493829 USP6P35125 1406 aa26.56■■□□□ 1.84
USP39-218ENST00000493829 PER1O15534 1290 aaPredicted RBP26.56■■□□□ 1.84
USP39-218ENST00000493829 FOXO3O43524 673 aa26.55■■□□□ 1.84
USP39-218ENST00000493829 XPCQ01831 940 aaPredicted RBP26.55■■□□□ 1.84
USP39-218ENST00000493829 BRINP3Q76B58 766 aa26.55■■□□□ 1.84
USP39-218ENST00000493829 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.54■■□□□ 1.84
USP39-218ENST00000493829 DDX17Q92841 729 aaKnown RBP26.54■■□□□ 1.84
USP39-218ENST00000493829 ROBO1Q9Y6N7 1651 aa26.54■■□□□ 1.84
USP39-218ENST00000493829 EDC4Q6P2E9 1401 aaKnown RBP26.53■■□□□ 1.84
USP39-218ENST00000493829 KIF20BQ96Q89 1820 aa26.53■■□□□ 1.84
USP39-218ENST00000493829 IQSEC2Q5JU85 1478 aa26.53■■□□□ 1.84
USP39-218ENST00000493829 CC2D1BQ5T0F9 858 aaKnown RBP26.53■■□□□ 1.84
USP39-218ENST00000493829 ZNF692Q9BU19 519 aaPredicted RBP26.51■■□□□ 1.83
USP39-218ENST00000493829 UBAP1LF5GYI3 381 aa26.5■■□□□ 1.83
USP39-218ENST00000493829 PSME1Q06323 249 aa26.5■■□□□ 1.83
USP39-218ENST00000493829 SCAF1Q9H7N4 1312 aaKnown RBP26.49■■□□□ 1.83
USP39-218ENST00000493829 PIP4K2BP78356 416 aa26.49■■□□□ 1.83
USP39-218ENST00000493829 CGNL1Q0VF96 1302 aa26.49■■□□□ 1.83
USP39-218ENST00000493829 AMER1Q5JTC6 1135 aaPredicted RBP26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms