RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 FAM135BQ49AJ0 1406 aa22.19■■□□□ 1.14
HPS4-216ENST00000493455 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.19■■□□□ 1.14
HPS4-216ENST00000493455 ST20-MTHFSA0A0A6YYL1 179 aa22.18■■□□□ 1.14
HPS4-216ENST00000493455 HSPA5P11021 654 aaKnown RBP22.18■■□□□ 1.14
HPS4-216ENST00000493455 SIRT1Q96EB6 747 aa22.15■■□□□ 1.14
HPS4-216ENST00000493455 ADGRL3Q9HAR2 1447 aa22.12■■□□□ 1.13
HPS4-216ENST00000493455 MSH6P52701 1360 aa22.11■■□□□ 1.13
HPS4-216ENST00000493455 NUTM2FA1L443 756 aa22.09■■□□□ 1.13
HPS4-216ENST00000493455 ADGRB2O60241 1585 aa22.07■■□□□ 1.12
HPS4-216ENST00000493455 NCOA3Q9Y6Q9 1424 aa22.06■■□□□ 1.12
HPS4-216ENST00000493455 TULP4Q9NRJ4 1543 aa22.06■■□□□ 1.12
HPS4-216ENST00000493455 ATF3P18847 181 aa22.06■■□□□ 1.12
HPS4-216ENST00000493455 CERKQ8TCT0 537 aa22.06■■□□□ 1.12
HPS4-216ENST00000493455 POLR3GLQ9BT43 218 aa22.06■■□□□ 1.12
HPS4-216ENST00000493455 C19orf44Q9H6X5 657 aa22.06■■□□□ 1.12
HPS4-216ENST00000493455 CDC42BPGQ6DT37 1551 aa22.06■■□□□ 1.12
HPS4-216ENST00000493455 SRPK2P78362 688 aaKnown RBP22.05■■□□□ 1.12
HPS4-216ENST00000493455 FMN2Q9NZ56 1722 aa22.05■■□□□ 1.12
HPS4-216ENST00000493455 TESK2Q96S53 571 aa22.04■■□□□ 1.12
HPS4-216ENST00000493455 RGPD8O14715 1765 aaPredicted RBP22.04■■□□□ 1.12
HPS4-216ENST00000493455 EVC2Q86UK5 1308 aa22.04■■□□□ 1.12
HPS4-216ENST00000493455 WASLO00401 505 aaPredicted RBP22.03■■□□□ 1.12
HPS4-216ENST00000493455 TMF1P82094 1093 aa22.03■■□□□ 1.12
HPS4-216ENST00000493455 CDK19Q9BWU1 502 aa22.03■■□□□ 1.12
HPS4-216ENST00000493455 CABP2Q9NPB3 220 aa22.03■■□□□ 1.12
HPS4-216ENST00000493455 DISP3Q9P2K9 1392 aa22.02■■□□□ 1.12
HPS4-216ENST00000493455 SBNO2Q9Y2G9 1366 aa22.01■■□□□ 1.11
HPS4-216ENST00000493455 CADPS2Q86UW7 1296 aa21.99■■□□□ 1.11
HPS4-216ENST00000493455 DCCP43146 1447 aa21.98■■□□□ 1.11
HPS4-216ENST00000493455 SCAF1Q9H7N4 1312 aaKnown RBP21.98■■□□□ 1.11
HPS4-216ENST00000493455 USP32Q8NFA0 1604 aa21.98■■□□□ 1.11
HPS4-216ENST00000493455 UBAP1LF5GYI3 381 aa21.97■■□□□ 1.11
HPS4-216ENST00000493455 IQSEC2Q5JU85 1478 aa21.96■■□□□ 1.11
HPS4-216ENST00000493455 MST1RQ04912 1400 aa21.96■■□□□ 1.11
HPS4-216ENST00000493455 ITSN1Q15811 1721 aa21.95■■□□□ 1.1
HPS4-216ENST00000493455 SLC24A1O60721 1099 aa21.94■■□□□ 1.1
HPS4-216ENST00000493455 PIP4K2BP78356 416 aa21.94■■□□□ 1.1
HPS4-216ENST00000493455 NUDT16Q96DE0 195 aaKnown RBP21.94■■□□□ 1.1
HPS4-216ENST00000493455 PRR36Q9H6K5 1346 aa21.94■■□□□ 1.1
HPS4-216ENST00000493455 C11orf95C9JLR9 678 aaPredicted RBP21.93■■□□□ 1.1
HPS4-216ENST00000493455 TOM1O60784 492 aa21.93■■□□□ 1.1
HPS4-216ENST00000493455 ATP7BP35670 1465 aa21.93■■□□□ 1.1
HPS4-216ENST00000493455 ESCO1Q5FWF5 840 aa21.93■■□□□ 1.1
HPS4-216ENST00000493455 C1orf167Q5SNV9 1468 aa21.93■■□□□ 1.1
HPS4-216ENST00000493455 TMC1Q8TDI8 760 aa21.93■■□□□ 1.1
HPS4-216ENST00000493455 CDCA8Q53HL2 280 aa21.92■■□□□ 1.1
HPS4-216ENST00000493455 SLAIN2Q9P270 581 aa21.92■■□□□ 1.1
HPS4-216ENST00000493455 TOPAZ1Q8N9V7 1692 aa21.91■■□□□ 1.1
HPS4-216ENST00000493455 ANKARQ7Z5J8 1434 aa21.91■■□□□ 1.1
HPS4-216ENST00000493455 PMFBP1Q8TBY8 1022 aa21.9■■□□□ 1.1
HPS4-216ENST00000493455 ORAI2Q96SN7 254 aa21.9■■□□□ 1.1
HPS4-216ENST00000493455 PPIP5K1Q6PFW1 1433 aa21.89■■□□□ 1.1
HPS4-216ENST00000493455 ATAD2Q6PL18 1390 aa21.89■■□□□ 1.1
HPS4-216ENST00000493455 KIF7Q2M1P5 1343 aa21.89■■□□□ 1.1
HPS4-216ENST00000493455 ROBO1Q9Y6N7 1651 aa21.88■■□□□ 1.09
HPS4-216ENST00000493455 MYOM1P52179 1685 aa21.87■■□□□ 1.09
HPS4-216ENST00000493455 CABP1Q9NZU7 370 aa21.86■■□□□ 1.09
HPS4-216ENST00000493455 PHF8Q9UPP1 1060 aa21.86■■□□□ 1.09
HPS4-216ENST00000493455 CCDC61Q9Y6R9 512 aa21.86■■□□□ 1.09
HPS4-216ENST00000493455 CCDC7Q96M83 1385 aa21.86■■□□□ 1.09
HPS4-216ENST00000493455 KIF1AQ12756 1690 aa21.85■■□□□ 1.09
HPS4-216ENST00000493455 WASHC2AQ641Q2 1341 aa21.85■■□□□ 1.09
HPS4-216ENST00000493455 ZNF316A6NFI3 1004 aaPredicted RBP21.85■■□□□ 1.09
HPS4-216ENST00000493455 BRINP3Q76B58 766 aa21.84■■□□□ 1.09
HPS4-216ENST00000493455 SLC12A5Q9H2X9 1139 aa21.84■■□□□ 1.09
HPS4-216ENST00000493455 NGDNQ8NEJ9 315 aaKnown RBP21.83■■□□□ 1.09
HPS4-216ENST00000493455 DDX17Q92841 729 aaKnown RBP21.83■■□□□ 1.09
HPS4-216ENST00000493455 XPCQ01831 940 aaPredicted RBP21.81■■□□□ 1.08
HPS4-216ENST00000493455 PUS7Q96PZ0 661 aaKnown RBP21.81■■□□□ 1.08
HPS4-216ENST00000493455 AKAP12Q02952 1782 aa21.8■■□□□ 1.08
HPS4-216ENST00000493455 FOXO3O43524 673 aa21.8■■□□□ 1.08
HPS4-216ENST00000493455 ACEP12821 1306 aa21.8■■□□□ 1.08
HPS4-216ENST00000493455 PLEKHG3A1L390 1219 aa21.77■■□□□ 1.08
HPS4-216ENST00000493455 PSME1Q06323 249 aa21.77■■□□□ 1.08
HPS4-216ENST00000493455 HDGFL2Q7Z4V5 671 aaPredicted RBP21.77■■□□□ 1.08
HPS4-216ENST00000493455 PHLPP1O60346 1717 aa21.77■■□□□ 1.08
HPS4-216ENST00000493455 NHSL1Q5SYE7 1610 aa21.77■■□□□ 1.07
HPS4-216ENST00000493455 NINLQ9Y2I6 1382 aa21.76■■□□□ 1.07
HPS4-216ENST00000493455 TERF2IPQ9NYB0 399 aa21.76■■□□□ 1.07
HPS4-216ENST00000493455 MON2Q7Z3U7 1717 aa21.75■■□□□ 1.07
HPS4-216ENST00000493455 A0A1W2PP64 1363 aa21.74■■□□□ 1.07
HPS4-216ENST00000493455 KTN1Q86UP2 1357 aaKnown RBP21.74■■□□□ 1.07
HPS4-216ENST00000493455 CD163L1Q9NR16 1453 aa21.74■■□□□ 1.07
HPS4-216ENST00000493455 NPHP3Q7Z494 1330 aa21.74■■□□□ 1.07
HPS4-216ENST00000493455 PAK3O75914 559 aaPredicted RBP21.73■■□□□ 1.07
HPS4-216ENST00000493455 KRT28Q7Z3Y7 464 aa21.73■■□□□ 1.07
HPS4-216ENST00000493455 POLR3AO14802 1390 aaPredicted RBP21.73■■□□□ 1.07
HPS4-216ENST00000493455 DDX10Q13206 875 aaKnown RBP21.72■■□□□ 1.07
HPS4-216ENST00000493455 PANK3Q9H999 370 aa21.72■■□□□ 1.07
HPS4-216ENST00000493455 ANKRD36BQ8N2N9 1353 aa21.72■■□□□ 1.07
HPS4-216ENST00000493455 PLEKHG5O94827 1062 aa21.71■■□□□ 1.07
HPS4-216ENST00000493455 LMOD2Q6P5Q4 547 aa21.71■■□□□ 1.07
HPS4-216ENST00000493455 AHDC1Q5TGY3 1603 aaPredicted RBP21.7■■□□□ 1.06
HPS4-216ENST00000493455 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.7■■□□□ 1.06
HPS4-216ENST00000493455 USP6P35125 1406 aa21.7■■□□□ 1.06
HPS4-216ENST00000493455 CPSF1Q10570 1443 aaKnown RBP21.7■■□□□ 1.06
HPS4-216ENST00000493455 CNGB1Q14028 1251 aaPredicted RBP21.69■■□□□ 1.06
HPS4-216ENST00000493455 NSD3Q9BZ95 1437 aa21.69■■□□□ 1.06
HPS4-216ENST00000493455 PXDNQ92626 1479 aa21.69■■□□□ 1.06
HPS4-216ENST00000493455 TRPM3Q9HCF6 1732 aaPredicted RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms