RNA–Protein interactions for RNA: ENST00000493256.1

LYSMD4-208, Transcript of LysM domain containing 4, human

TSL 3

Gene LYSMD4, Length 880 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LYSMD4-208	ENST00000493256	ZNF772	Q68DY9	489 aa	Predicted RBP	32.81	■■■□□ 2.84
LYSMD4-208	ENST00000493256	TMEM132E	Q6IEE7	984 aa		32.81	■■■□□ 2.84
LYSMD4-208	ENST00000493256	ABCC11	Q96J66	1382 aa		32.8	■■■□□ 2.84
LYSMD4-208	ENST00000493256	KNDC1	Q76NI1	1749 aa		32.8	■■■□□ 2.84
LYSMD4-208	ENST00000493256	WAPL	Q7Z5K2	1190 aa		32.78	■■■□□ 2.84
LYSMD4-208	ENST00000493256	SOS2	Q07890	1332 aa	Predicted RBP	32.77	■■■□□ 2.84
LYSMD4-208	ENST00000493256	NRXN1	Q9ULB1	1477 aa		32.76	■■■□□ 2.84
LYSMD4-208	ENST00000493256	PLEKHH1	Q9ULM0	1364 aa		32.75	■■■□□ 2.83
LYSMD4-208	ENST00000493256	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.75	■■■□□ 2.83
LYSMD4-208	ENST00000493256	MYOM2	P54296	1465 aa		32.74	■■■□□ 2.83
LYSMD4-208	ENST00000493256	C14orf93	Q9H972	538 aa	Known RBP	32.72	■■■□□ 2.83
LYSMD4-208	ENST00000493256	AFF2	P51816	1311 aa		32.72	■■■□□ 2.83
LYSMD4-208	ENST00000493256	ESCO1	Q5FWF5	840 aa		32.7	■■■□□ 2.83
LYSMD4-208	ENST00000493256	CFAP70	Q5T0N1	1121 aa		32.68	■■■□□ 2.82
LYSMD4-208	ENST00000493256	C8orf37	Q96NL8	207 aa		32.67	■■■□□ 2.82
LYSMD4-208	ENST00000493256	NUTM2F	A1L443	756 aa		32.66	■■■□□ 2.82
LYSMD4-208	ENST00000493256	NPHP3	Q7Z494	1330 aa		32.65	■■■□□ 2.82
LYSMD4-208	ENST00000493256	RXRB	P28702	533 aa		32.64	■■■□□ 2.82
LYSMD4-208	ENST00000493256	SIRT1	Q96EB6	747 aa		32.64	■■■□□ 2.82
LYSMD4-208	ENST00000493256	FMN2	Q9NZ56	1722 aa		32.64	■■■□□ 2.82
LYSMD4-208	ENST00000493256	PXDN	Q92626	1479 aa		32.63	■■■□□ 2.81
LYSMD4-208	ENST00000493256	DHX57	Q6P158	1386 aa	Known RBP	32.63	■■■□□ 2.81
LYSMD4-208	ENST00000493256	ADAMTS2	O95450	1211 aa		32.62	■■■□□ 2.81
LYSMD4-208	ENST00000493256	FOXO3	O43524	673 aa		32.61	■■■□□ 2.81
LYSMD4-208	ENST00000493256	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.61	■■■□□ 2.81
LYSMD4-208	ENST00000493256	HRC	P23327	699 aa		32.6	■■■□□ 2.81
LYSMD4-208	ENST00000493256	XPC	Q01831	940 aa	Predicted RBP	32.58	■■■□□ 2.81
LYSMD4-208	ENST00000493256	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.57	■■■□□ 2.8
LYSMD4-208	ENST00000493256	NGLY1	Q96IV0	654 aa		32.56	■■■□□ 2.8
LYSMD4-208	ENST00000493256	ADGRB1	O14514	1584 aa		32.54	■■■□□ 2.8
LYSMD4-208	ENST00000493256	PRAM1	Q96QH2	718 aa		32.54	■■■□□ 2.8
LYSMD4-208	ENST00000493256	QTRT2	Q9H974	415 aa	Known RBP	32.54	■■■□□ 2.8
LYSMD4-208	ENST00000493256	KIF1A	Q12756	1690 aa		32.53	■■■□□ 2.8
LYSMD4-208	ENST00000493256	DLC1	Q96QB1	1528 aa		32.53	■■■□□ 2.8
LYSMD4-208	ENST00000493256	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.52	■■■□□ 2.8
LYSMD4-208	ENST00000493256	DCAF11	Q8TEB1	546 aa		32.51	■■■□□ 2.79
LYSMD4-208	ENST00000493256	KDM2A	Q9Y2K7	1162 aa		32.5	■■■□□ 2.79
LYSMD4-208	ENST00000493256	RGPD8	O14715	1765 aa	Predicted RBP	32.5	■■■□□ 2.79
LYSMD4-208	ENST00000493256	RBM6	P78332	1123 aa	Known RBP	32.48	■■■□□ 2.79
LYSMD4-208	ENST00000493256	RGS12	O14924	1447 aa		32.47	■■■□□ 2.79
LYSMD4-208	ENST00000493256	POGK	Q9P215	609 aa		32.47	■■■□□ 2.79
LYSMD4-208	ENST00000493256	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.45	■■■□□ 2.79
LYSMD4-208	ENST00000493256	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.45	■■■□□ 2.79
LYSMD4-208	ENST00000493256	USP21	Q9UK80	565 aa		32.45	■■■□□ 2.79
LYSMD4-208	ENST00000493256	TRAK1	Q9UPV9	953 aa		32.44	■■■□□ 2.78
LYSMD4-208	ENST00000493256	STAC3	Q96MF2	364 aa		32.43	■■■□□ 2.78
LYSMD4-208	ENST00000493256	PHF8	Q9UPP1	1060 aa		32.43	■■■□□ 2.78
LYSMD4-208	ENST00000493256	ADGRB2	O60241	1585 aa		32.43	■■■□□ 2.78
LYSMD4-208	ENST00000493256	SPATA31A3	Q5VYP0	1347 aa		32.43	■■■□□ 2.78
LYSMD4-208	ENST00000493256	MARF1	Q9Y4F3	1742 aa	Known RBP	32.43	■■■□□ 2.78
LYSMD4-208	ENST00000493256	KRT28	Q7Z3Y7	464 aa		32.42	■■■□□ 2.78
LYSMD4-208	ENST00000493256	USP32	Q8NFA0	1604 aa		32.4	■■■□□ 2.78
LYSMD4-208	ENST00000493256	TRPC5	Q9UL62	973 aa	Predicted RBP	32.39	■■■□□ 2.78
LYSMD4-208	ENST00000493256	ATRN	O75882	1429 aa		32.38	■■■□□ 2.77
LYSMD4-208	ENST00000493256	ANKAR	Q7Z5J8	1434 aa		32.38	■■■□□ 2.77
LYSMD4-208	ENST00000493256	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.36	■■■□□ 2.77
LYSMD4-208	ENST00000493256	TNS3	Q68CZ2	1445 aa		32.35	■■■□□ 2.77
LYSMD4-208	ENST00000493256	BCL9L	Q86UU0	1499 aa		32.35	■■■□□ 2.77
LYSMD4-208	ENST00000493256	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.34	■■■□□ 2.77
LYSMD4-208	ENST00000493256	PSME1	Q06323	249 aa		32.33	■■■□□ 2.77
LYSMD4-208	ENST00000493256	PMFBP1	Q8TBY8	1022 aa		32.31	■■■□□ 2.76
LYSMD4-208	ENST00000493256	SBNO1	A3KN83	1393 aa		32.31	■■■□□ 2.76
LYSMD4-208	ENST00000493256	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.29	■■■□□ 2.76
LYSMD4-208	ENST00000493256	TULP4	Q9NRJ4	1543 aa		32.28	■■■□□ 2.76
LYSMD4-208	ENST00000493256	PRR36	Q9H6K5	1346 aa		32.27	■■■□□ 2.76
LYSMD4-208	ENST00000493256	EIF3A	Q14152	1382 aa	Known RBP	32.27	■■■□□ 2.76
LYSMD4-208	ENST00000493256	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	32.26	■■■□□ 2.76
LYSMD4-208	ENST00000493256	WASL	O00401	505 aa	Predicted RBP	32.26	■■■□□ 2.75
LYSMD4-208	ENST00000493256	SLIT2	O94813	1529 aa		32.26	■■■□□ 2.75
LYSMD4-208	ENST00000493256	CABLES1	Q8TDN4	633 aa		32.25	■■■□□ 2.75
LYSMD4-208	ENST00000493256	ARHGEF10	O15013	1369 aa		32.24	■■■□□ 2.75
LYSMD4-208	ENST00000493256	LMOD2	Q6P5Q4	547 aa		32.24	■■■□□ 2.75
LYSMD4-208	ENST00000493256	ABCA3	Q99758	1704 aa		32.23	■■■□□ 2.75
LYSMD4-208	ENST00000493256	PLEKHG5	O94827	1062 aa		32.22	■■■□□ 2.75
LYSMD4-208	ENST00000493256	HAP1	P54257	671 aa	Predicted RBP	32.22	■■■□□ 2.75
LYSMD4-208	ENST00000493256	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.22	■■■□□ 2.75
LYSMD4-208	ENST00000493256	KIAA1210	Q9ULL0	1709 aa		32.21	■■■□□ 2.75
LYSMD4-208	ENST00000493256	UNC5CL	Q8IV45	518 aa		32.21	■■■□□ 2.75
LYSMD4-208	ENST00000493256	GJD4	Q96KN9	370 aa	Predicted RBP	32.21	■■■□□ 2.75
LYSMD4-208	ENST00000493256	ATAD2	Q6PL18	1390 aa		32.19	■■■□□ 2.74
LYSMD4-208	ENST00000493256	GPRASP1	Q5JY77	1395 aa		32.18	■■■□□ 2.74
LYSMD4-208	ENST00000493256	RALGAPB	Q86X10	1494 aa		32.16	■■■□□ 2.74
LYSMD4-208	ENST00000493256	GLI3	P10071	1580 aa		32.15	■■■□□ 2.74
LYSMD4-208	ENST00000493256	ALS2	Q96Q42	1657 aa		32.15	■■■□□ 2.74
LYSMD4-208	ENST00000493256	ATP7B	P35670	1465 aa		32.15	■■■□□ 2.74
LYSMD4-208	ENST00000493256	PLCH1	Q4KWH8	1693 aa		32.15	■■■□□ 2.74
LYSMD4-208	ENST00000493256	ITSN1	Q15811	1721 aa		32.12	■■■□□ 2.73
LYSMD4-208	ENST00000493256	NBPF1	Q3BBV0	1214 aa		32.12	■■■□□ 2.73
LYSMD4-208	ENST00000493256	NGDN	Q8NEJ9	315 aa	Known RBP	32.12	■■■□□ 2.73
LYSMD4-208	ENST00000493256	NWD2	Q9ULI1	1742 aa		32.12	■■■□□ 2.73
LYSMD4-208	ENST00000493256	NUDT16	Q96DE0	195 aa	Known RBP	32.1	■■■□□ 2.73
LYSMD4-208	ENST00000493256	EP400	Q96L91	3159 aa		32.09	■■■□□ 2.73
LYSMD4-208	ENST00000493256	FAM83G	A6ND36	823 aa		32.08	■■■□□ 2.73
LYSMD4-208	ENST00000493256	CDK19	Q9BWU1	502 aa		32.08	■■■□□ 2.73
LYSMD4-208	ENST00000493256	VPS72	Q15906	364 aa		32.06	■■■□□ 2.72
LYSMD4-208	ENST00000493256	TOPAZ1	Q8N9V7	1692 aa		32.05	■■■□□ 2.72
LYSMD4-208	ENST00000493256	PAK3	O75914	559 aa	Predicted RBP	32.04	■■■□□ 2.72
LYSMD4-208	ENST00000493256	CRYBG1	Q9Y4K1	1723 aa		32.03	■■■□□ 2.72
LYSMD4-208	ENST00000493256	L3MBTL2	Q969R5	705 aa		32.01	■■■□□ 2.71
LYSMD4-208	ENST00000493256	NRAP	Q86VF7	1730 aa		32	■■■□□ 2.71

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms