RNA–Protein interactions for RNA: ENST00000492858.6

GPNMB-214, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 721 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-214ENST00000492858 NPHP3Q7Z494 1330 aa18.53■□□□□ 0.56
GPNMB-214ENST00000492858 DEFB132Q7Z7B7 95 aa18.52■□□□□ 0.56
GPNMB-214ENST00000492858 ESCO1Q5FWF5 840 aa18.51■□□□□ 0.55
GPNMB-214ENST00000492858 XPCQ01831 940 aaPredicted RBP18.5■□□□□ 0.55
GPNMB-214ENST00000492858 ITGAEP38570 1179 aa18.49■□□□□ 0.55
GPNMB-214ENST00000492858 RALGAPBQ86X10 1494 aa18.49■□□□□ 0.55
GPNMB-214ENST00000492858 PXDNQ92626 1479 aa18.49■□□□□ 0.55
GPNMB-214ENST00000492858 CLTCL1P53675 1640 aa18.49■□□□□ 0.55
GPNMB-214ENST00000492858 FOXO3O43524 673 aa18.48■□□□□ 0.55
GPNMB-214ENST00000492858 SF3B2Q13435 895 aaKnown RBP18.48■□□□□ 0.55
GPNMB-214ENST00000492858 UNC5CLQ8IV45 518 aa18.48■□□□□ 0.55
GPNMB-214ENST00000492858 HFM1A2PYH4 1435 aa18.48■□□□□ 0.55
GPNMB-214ENST00000492858 PRAG1Q86YV5 1406 aa18.47■□□□□ 0.55
GPNMB-214ENST00000492858 VGFO15240 615 aaPredicted RBP18.46■□□□□ 0.55
GPNMB-214ENST00000492858 GLI3P10071 1580 aa18.46■□□□□ 0.55
GPNMB-214ENST00000492858 MARF1Q9Y4F3 1742 aaKnown RBP18.46■□□□□ 0.55
GPNMB-214ENST00000492858 LRP5O75197 1615 aa18.45■□□□□ 0.54
GPNMB-214ENST00000492858 SLIT2O94813 1529 aa18.44■□□□□ 0.54
GPNMB-214ENST00000492858 LRPPRCP42704 1394 aaKnown RBP18.43■□□□□ 0.54
GPNMB-214ENST00000492858 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.43■□□□□ 0.54
GPNMB-214ENST00000492858 SEPT12Q8IYM1 358 aa18.43■□□□□ 0.54
GPNMB-214ENST00000492858 CDC42BPGQ6DT37 1551 aa18.42■□□□□ 0.54
GPNMB-214ENST00000492858 NUTM2FA1L443 756 aa18.42■□□□□ 0.54
GPNMB-214ENST00000492858 PSDA5PKW4 1024 aaPredicted RBP18.41■□□□□ 0.54
GPNMB-214ENST00000492858 NAIPQ13075 1403 aa18.4■□□□□ 0.54
GPNMB-214ENST00000492858 KIF1BO60333 1816 aa18.39■□□□□ 0.53
GPNMB-214ENST00000492858 BRWD3Q6RI45 1802 aa18.39■□□□□ 0.53
GPNMB-214ENST00000492858 CCDC9Q9Y3X0 531 aaKnown RBP18.38■□□□□ 0.53
GPNMB-214ENST00000492858 SPATA31A3Q5VYP0 1347 aa18.38■□□□□ 0.53
GPNMB-214ENST00000492858 HRCP23327 699 aa18.37■□□□□ 0.53
GPNMB-214ENST00000492858 HAP1P54257 671 aaPredicted RBP18.37■□□□□ 0.53
GPNMB-214ENST00000492858 VPS72Q15906 364 aa18.37■□□□□ 0.53
GPNMB-214ENST00000492858 KRT27Q7Z3Y8 459 aa18.37■□□□□ 0.53
GPNMB-214ENST00000492858 RPGRIP1LQ68CZ1 1315 aa18.37■□□□□ 0.53
GPNMB-214ENST00000492858 USP32Q8NFA0 1604 aa18.36■□□□□ 0.53
GPNMB-214ENST00000492858 BAG6P46379 1132 aa18.35■□□□□ 0.53
GPNMB-214ENST00000492858 WAPLQ7Z5K2 1190 aa18.35■□□□□ 0.53
GPNMB-214ENST00000492858 CCDC144AA2RUR9 1427 aa18.34■□□□□ 0.53
GPNMB-214ENST00000492858 ONECUT3O60422 494 aaPredicted RBP18.34■□□□□ 0.53
GPNMB-214ENST00000492858 PLEKHG5O94827 1062 aa18.34■□□□□ 0.53
GPNMB-214ENST00000492858 STK26Q9P289 416 aa18.34■□□□□ 0.53
GPNMB-214ENST00000492858 A0A0G2JS52 829 aa18.33■□□□□ 0.52
GPNMB-214ENST00000492858 MYT1Q01538 1121 aa18.33■□□□□ 0.52
GPNMB-214ENST00000492858 KRT28Q7Z3Y7 464 aa18.33■□□□□ 0.52
GPNMB-214ENST00000492858 CABLES1Q8TDN4 633 aa18.32■□□□□ 0.52
GPNMB-214ENST00000492858 TNS3Q68CZ2 1445 aa18.3■□□□□ 0.52
GPNMB-214ENST00000492858 PLEKHH1Q9ULM0 1364 aa18.3■□□□□ 0.52
GPNMB-214ENST00000492858 TECPR2O15040 1411 aa18.29■□□□□ 0.52
GPNMB-214ENST00000492858 PPLO60437 1756 aa18.28■□□□□ 0.52
GPNMB-214ENST00000492858 EN1Q05925 392 aaPredicted RBP18.28■□□□□ 0.52
GPNMB-214ENST00000492858 R3HDM1Q15032 1099 aaKnown RBP18.28■□□□□ 0.52
GPNMB-214ENST00000492858 KIF1AQ12756 1690 aa18.28■□□□□ 0.52
GPNMB-214ENST00000492858 ADGRF5Q8IZF2 1346 aa18.27■□□□□ 0.52
GPNMB-214ENST00000492858 FAM98CQ17RN3 349 aaKnown RBP18.27■□□□□ 0.52
GPNMB-214ENST00000492858 LMOD2Q6P5Q4 547 aa18.27■□□□□ 0.52
GPNMB-214ENST00000492858 PLCH1Q4KWH8 1693 aa18.27■□□□□ 0.52
GPNMB-214ENST00000492858 NWD2Q9ULI1 1742 aa18.26■□□□□ 0.51
GPNMB-214ENST00000492858 PSME1Q06323 249 aa18.26■□□□□ 0.51
GPNMB-214ENST00000492858 FMN2Q9NZ56 1722 aa18.26■□□□□ 0.51
GPNMB-214ENST00000492858 FAM83GA6ND36 823 aa18.25■□□□□ 0.51
GPNMB-214ENST00000492858 TMEM132EQ6IEE7 984 aa18.25■□□□□ 0.51
GPNMB-214ENST00000492858 PHF8Q9UPP1 1060 aa18.25■□□□□ 0.51
GPNMB-214ENST00000492858 ABCC11Q96J66 1382 aa18.25■□□□□ 0.51
GPNMB-214ENST00000492858 RRBP1Q9P2E9 1410 aaKnown RBP18.24■□□□□ 0.51
GPNMB-214ENST00000492858 FAM182BQ5T319 152 aa18.23■□□□□ 0.51
GPNMB-214ENST00000492858 PPARGC1BQ86YN6 1023 aaKnown RBP18.23■□□□□ 0.51
GPNMB-214ENST00000492858 SLC4A1APQ9BWU0 796 aaKnown RBP18.23■□□□□ 0.51
GPNMB-214ENST00000492858 SBNO1A3KN83 1393 aa18.22■□□□□ 0.51
GPNMB-214ENST00000492858 ARHGEF10O15013 1369 aa18.22■□□□□ 0.51
GPNMB-214ENST00000492858 RGL3Q3MIN7 710 aa18.21■□□□□ 0.51
GPNMB-214ENST00000492858 BTG4Q9NY30 223 aa18.2■□□□□ 0.5
GPNMB-214ENST00000492858 ABCA3Q99758 1704 aa18.2■□□□□ 0.5
GPNMB-214ENST00000492858 DISP2A7MBM2 1401 aa18.19■□□□□ 0.5
GPNMB-214ENST00000492858 YY1P25490 414 aa18.19■□□□□ 0.5
GPNMB-214ENST00000492858 KNDC1Q76NI1 1749 aa18.19■□□□□ 0.5
GPNMB-214ENST00000492858 YTHDC2Q9H6S0 1430 aaKnown RBP18.19■□□□□ 0.5
GPNMB-214ENST00000492858 NRXN1Q9ULB1 1477 aa18.19■□□□□ 0.5
GPNMB-214ENST00000492858 RGPD1P0DJD0 1748 aa18.18■□□□□ 0.5
GPNMB-214ENST00000492858 EZH2Q15910 746 aaKnown RBP18.18■□□□□ 0.5
GPNMB-214ENST00000492858 ANKRD30BQ9BXX2 1392 aa18.17■□□□□ 0.5
GPNMB-214ENST00000492858 NRAPQ86VF7 1730 aa18.17■□□□□ 0.5
GPNMB-214ENST00000492858 PIK3C2GO75747 1445 aa18.15■□□□□ 0.5
GPNMB-214ENST00000492858 PMFBP1Q8TBY8 1022 aa18.15■□□□□ 0.5
GPNMB-214ENST00000492858 SPATA31A5Q5VU36 1347 aa18.15■□□□□ 0.5
GPNMB-214ENST00000492858 SPATA31A7Q8IWB4 1347 aa18.15■□□□□ 0.5
GPNMB-214ENST00000492858 IFT172Q9UG01 1749 aa18.15■□□□□ 0.5
GPNMB-214ENST00000492858 RGPD8O14715 1765 aaPredicted RBP18.14■□□□□ 0.5
GPNMB-214ENST00000492858 SIRT1Q96EB6 747 aa18.14■□□□□ 0.49
GPNMB-214ENST00000492858 SPATA31E1Q6ZUB1 1445 aa18.14■□□□□ 0.49
GPNMB-214ENST00000492858 SAFB2Q14151 953 aaKnown RBP eCLIP18.13■□□□□ 0.49
GPNMB-214ENST00000492858 CAMKK2Q96RR4 588 aa18.13■□□□□ 0.49
GPNMB-214ENST00000492858 TNS1Q9HBL0 1735 aaKnown RBP18.12■□□□□ 0.49
GPNMB-214ENST00000492858 TRIM37O94972 964 aa18.12■□□□□ 0.49
GPNMB-214ENST00000492858 COL14A1Q05707 1796 aaKnown RBP18.11■□□□□ 0.49
GPNMB-214ENST00000492858 THSD7AQ9UPZ6 1657 aa18.1■□□□□ 0.49
GPNMB-214ENST00000492858 ADGRB2O60241 1585 aa18.1■□□□□ 0.49
GPNMB-214ENST00000492858 PRAM1Q96QH2 718 aa18.1■□□□□ 0.49
GPNMB-214ENST00000492858 APBA3O96018 575 aa18.09■□□□□ 0.49
GPNMB-214ENST00000492858 ANKARQ7Z5J8 1434 aa18.08■□□□□ 0.49
GPNMB-214ENST00000492858 PARD3Q8TEW0 1356 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms