RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 NKTRP30414 1462 aaKnown RBP13.39□□□□□ -0.27
USP54-214ENST00000492357 NCOA3Q9Y6Q9 1424 aa13.38□□□□□ -0.27
USP54-214ENST00000492357 POGKQ9P215 609 aa13.37□□□□□ -0.27
USP54-214ENST00000492357 DMRT2Q9Y5R5 561 aa13.37□□□□□ -0.27
USP54-214ENST00000492357 ATAD2Q6PL18 1390 aa13.36□□□□□ -0.27
USP54-214ENST00000492357 DISP3Q9P2K9 1392 aa13.36□□□□□ -0.27
USP54-214ENST00000492357 HIRIP3Q9BW71 556 aaPredicted RBP13.36□□□□□ -0.27
USP54-214ENST00000492357 PTPRUQ92729 1446 aa13.36□□□□□ -0.27
USP54-214ENST00000492357 TULP4Q9NRJ4 1543 aa13.35□□□□□ -0.27
USP54-214ENST00000492357 C11orf95C9JLR9 678 aaPredicted RBP13.35□□□□□ -0.27
USP54-214ENST00000492357 KCNA6P17658 529 aa13.35□□□□□ -0.27
USP54-214ENST00000492357 PRAM1Q96QH2 718 aa13.35□□□□□ -0.27
USP54-214ENST00000492357 SLC26A8Q96RN1 970 aa13.35□□□□□ -0.27
USP54-214ENST00000492357 AMOTL2Q9Y2J4 779 aa13.35□□□□□ -0.27
USP54-214ENST00000492357 STRCQ7RTU9 1775 aa13.35□□□□□ -0.27
USP54-214ENST00000492357 KTN1Q86UP2 1357 aaKnown RBP13.34□□□□□ -0.27
USP54-214ENST00000492357 MYOM1P52179 1685 aa13.34□□□□□ -0.27
USP54-214ENST00000492357 ROBO2Q9HCK4 1378 aa13.33□□□□□ -0.27
USP54-214ENST00000492357 STK26Q9P289 416 aa13.33□□□□□ -0.28
USP54-214ENST00000492357 CDC42BPGQ6DT37 1551 aa13.32□□□□□ -0.28
USP54-214ENST00000492357 NCKAP5LQ9HCH0 1330 aa13.32□□□□□ -0.28
USP54-214ENST00000492357 DDX10Q13206 875 aaKnown RBP13.31□□□□□ -0.28
USP54-214ENST00000492357 NPM3O75607 178 aaKnown RBP13.3□□□□□ -0.28
USP54-214ENST00000492357 NPC1L1Q9UHC9 1359 aa13.3□□□□□ -0.28
USP54-214ENST00000492357 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.3□□□□□ -0.28
USP54-214ENST00000492357 ANKARQ7Z5J8 1434 aa13.3□□□□□ -0.28
USP54-214ENST00000492357 USP32Q8NFA0 1604 aa13.29□□□□□ -0.28
USP54-214ENST00000492357 WASLO00401 505 aaPredicted RBP13.29□□□□□ -0.28
USP54-214ENST00000492357 ITSN1Q15811 1721 aa13.29□□□□□ -0.28
USP54-214ENST00000492357 DCCP43146 1447 aa13.29□□□□□ -0.28
USP54-214ENST00000492357 ADGRL3Q9HAR2 1447 aa13.29□□□□□ -0.28
USP54-214ENST00000492357 ATP7BP35670 1465 aa13.29□□□□□ -0.28
USP54-214ENST00000492357 PLEKHH1Q9ULM0 1364 aa13.28□□□□□ -0.28
USP54-214ENST00000492357 TOPAZ1Q8N9V7 1692 aa13.27□□□□□ -0.29
USP54-214ENST00000492357 HSPA2P54652 639 aa13.26□□□□□ -0.29
USP54-214ENST00000492357 WAPLQ7Z5K2 1190 aa13.26□□□□□ -0.29
USP54-214ENST00000492357 ANKRD36BQ8N2N9 1353 aa13.26□□□□□ -0.29
USP54-214ENST00000492357 MINK1Q8N4C8 1332 aaPredicted RBP13.26□□□□□ -0.29
USP54-214ENST00000492357 FMN2Q9NZ56 1722 aa13.26□□□□□ -0.29
USP54-214ENST00000492357 NALCNQ8IZF0 1738 aa13.25□□□□□ -0.29
USP54-214ENST00000492357 ANP32CO43423 234 aa13.25□□□□□ -0.29
USP54-214ENST00000492357 SRPK2P78362 688 aaKnown RBP13.25□□□□□ -0.29
USP54-214ENST00000492357 CDK19Q9BWU1 502 aa13.25□□□□□ -0.29
USP54-214ENST00000492357 TERF2IPQ9NYB0 399 aa13.25□□□□□ -0.29
USP54-214ENST00000492357 BRD4O60885 1362 aaPredicted RBP13.24□□□□□ -0.29
USP54-214ENST00000492357 NSD2O96028 1365 aa13.24□□□□□ -0.29
USP54-214ENST00000492357 PER1O15534 1290 aaPredicted RBP13.24□□□□□ -0.29
USP54-214ENST00000492357 CCDC61Q9Y6R9 512 aa13.24□□□□□ -0.29
USP54-214ENST00000492357 CCER2I3L3R5 266 aa13.22□□□□□ -0.29
USP54-214ENST00000492357 SAFB2Q14151 953 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP54-214ENST00000492357 PLEKHG3A1L390 1219 aa13.21□□□□□ -0.29
USP54-214ENST00000492357 RALBP1Q15311 655 aa13.21□□□□□ -0.29
USP54-214ENST00000492357 POLR3GLQ9BT43 218 aa13.21□□□□□ -0.29
USP54-214ENST00000492357 ZNF692Q9BU19 519 aaPredicted RBP13.21□□□□□ -0.29
USP54-214ENST00000492357 PANK3Q9H999 370 aa13.21□□□□□ -0.29
USP54-214ENST00000492357 KNSTRNQ9Y448 316 aa13.21□□□□□ -0.29
USP54-214ENST00000492357 STRCP1A6NGW2 1772 aa13.21□□□□□ -0.29
USP54-214ENST00000492357 CPSF1Q10570 1443 aaKnown RBP13.21□□□□□ -0.3
USP54-214ENST00000492357 AKAP12Q02952 1782 aa13.2□□□□□ -0.3
USP54-214ENST00000492357 HDGFL2Q7Z4V5 671 aaPredicted RBP13.2□□□□□ -0.3
USP54-214ENST00000492357 C19orf44Q9H6X5 657 aa13.2□□□□□ -0.3
USP54-214ENST00000492357 CABP2Q9NPB3 220 aa13.2□□□□□ -0.3
USP54-214ENST00000492357 PPIP5K1Q6PFW1 1433 aa13.2□□□□□ -0.3
USP54-214ENST00000492357 MON2Q7Z3U7 1717 aa13.19□□□□□ -0.3
USP54-214ENST00000492357 PROSER2Q86WR7 435 aaPredicted RBP13.19□□□□□ -0.3
USP54-214ENST00000492357 NUDT16Q96DE0 195 aaKnown RBP13.19□□□□□ -0.3
USP54-214ENST00000492357 PRKRIP1Q9H875 184 aaPredicted RBP13.19□□□□□ -0.3
USP54-214ENST00000492357 POLR3AO14802 1390 aaPredicted RBP13.19□□□□□ -0.3
USP54-214ENST00000492357 PARD3Q8TEW0 1356 aa13.19□□□□□ -0.3
USP54-214ENST00000492357 CGNL1Q0VF96 1302 aa13.18□□□□□ -0.3
USP54-214ENST00000492357 CD163L1Q9NR16 1453 aa13.18□□□□□ -0.3
USP54-214ENST00000492357 EDC4Q6P2E9 1401 aaKnown RBP13.18□□□□□ -0.3
USP54-214ENST00000492357 LRRC7Q96NW7 1537 aa13.18□□□□□ -0.3
USP54-214ENST00000492357 KIF1AQ12756 1690 aa13.18□□□□□ -0.3
USP54-214ENST00000492357 TMC1Q8TDI8 760 aa13.17□□□□□ -0.3
USP54-214ENST00000492357 A0A1W2PP64 1363 aa13.17□□□□□ -0.3
USP54-214ENST00000492357 TMEM94Q12767 1356 aa13.17□□□□□ -0.3
USP54-214ENST00000492357 ANKRD26Q9UPS8 1709 aa13.16□□□□□ -0.3
USP54-214ENST00000492357 AMER1Q5JTC6 1135 aaPredicted RBP13.16□□□□□ -0.3
USP54-214ENST00000492357 CADPS2Q86UW7 1296 aa13.16□□□□□ -0.3
USP54-214ENST00000492357 SLC12A5Q9H2X9 1139 aa13.16□□□□□ -0.3
USP54-214ENST00000492357 MSH6P52701 1360 aa13.16□□□□□ -0.3
USP54-214ENST00000492357 PRR36Q9H6K5 1346 aa13.15□□□□□ -0.3
USP54-214ENST00000492357 NSD3Q9BZ95 1437 aa13.15□□□□□ -0.3
USP54-214ENST00000492357 CABP1Q9NZU7 370 aa13.15□□□□□ -0.3
USP54-214ENST00000492357 XIRP1Q702N8 1843 aaKnown RBP13.15□□□□□ -0.3
USP54-214ENST00000492357 NRKQ7Z2Y5 1582 aa13.15□□□□□ -0.3
USP54-214ENST00000492357 MIER1Q8N108 512 aa13.14□□□□□ -0.31
USP54-214ENST00000492357 MYBBP1AQ9BQG0 1328 aaKnown RBP13.13□□□□□ -0.31
USP54-214ENST00000492357 KIF20BQ96Q89 1820 aa13.13□□□□□ -0.31
USP54-214ENST00000492357 TTC21AQ8NDW8 1320 aa13.13□□□□□ -0.31
USP54-214ENST00000492357 USP54Q70EL1 1684 aa13.12□□□□□ -0.31
USP54-214ENST00000492357 IQSEC2Q5JU85 1478 aa13.12□□□□□ -0.31
USP54-214ENST00000492357 ATF3P18847 181 aa13.12□□□□□ -0.31
USP54-214ENST00000492357 C14orf37Q86TY3 774 aa13.12□□□□□ -0.31
USP54-214ENST00000492357 CARD14Q9BXL6 1004 aa13.12□□□□□ -0.31
USP54-214ENST00000492357 USP6P35125 1406 aa13.12□□□□□ -0.31
USP54-214ENST00000492357 LTBP4Q8N2S1 1624 aa13.11□□□□□ -0.31
USP54-214ENST00000492357 MST1RQ04912 1400 aa13.11□□□□□ -0.31
USP54-214ENST00000492357 SSH2Q76I76 1423 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms