RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 TBC1D2BQ9UPU7 963 aa15.91■□□□□ 0.14
COL6A3-212ENST00000491769 GPS2Q13227 327 aa15.91■□□□□ 0.14
COL6A3-212ENST00000491769 ABTB2Q8N961 1025 aa15.91■□□□□ 0.14
COL6A3-212ENST00000491769 ROCK1Q13464 1354 aa15.9■□□□□ 0.14
COL6A3-212ENST00000491769 XBP1P17861 261 aa15.9■□□□□ 0.14
COL6A3-212ENST00000491769 HSP90AB4PQ58FF6 505 aa15.9■□□□□ 0.14
COL6A3-212ENST00000491769 ABCC8Q09428 1581 aa15.9■□□□□ 0.14
COL6A3-212ENST00000491769 HOMER1Q86YM7 354 aa15.9■□□□□ 0.14
COL6A3-212ENST00000491769 RRP12Q5JTH9 1297 aaKnown RBP15.89■□□□□ 0.13
COL6A3-212ENST00000491769 SMARCA2P51531 1590 aa15.89■□□□□ 0.13
COL6A3-212ENST00000491769 APAF1O14727 1248 aa15.88■□□□□ 0.13
COL6A3-212ENST00000491769 SLC3A2P08195 630 aaKnown RBP15.88■□□□□ 0.13
COL6A3-212ENST00000491769 CDK5RAP3Q96JB5 506 aa15.88■□□□□ 0.13
COL6A3-212ENST00000491769 DDX54Q8TDD1 881 aaKnown RBP15.88■□□□□ 0.13
COL6A3-212ENST00000491769 DNAJC2Q99543 621 aaKnown RBP15.87■□□□□ 0.13
COL6A3-212ENST00000491769 CNNM1Q9NRU3 951 aa15.87■□□□□ 0.13
COL6A3-212ENST00000491769 DDX19BQ9UMR2 479 aa15.87■□□□□ 0.13
COL6A3-212ENST00000491769 SMC3Q9UQE7 1217 aa15.87■□□□□ 0.13
COL6A3-212ENST00000491769 KRT18P05783 430 aaKnown RBP15.86■□□□□ 0.13
COL6A3-212ENST00000491769 SART3Q15020 963 aaKnown RBP15.86■□□□□ 0.13
COL6A3-212ENST00000491769 STK11IPQ8N1F8 1099 aa15.86■□□□□ 0.13
COL6A3-212ENST00000491769 UBTFL1P0CB47 393 aaPredicted RBP15.86■□□□□ 0.13
COL6A3-212ENST00000491769 PAXIP1Q6ZW49 1069 aaPredicted RBP15.86■□□□□ 0.13
COL6A3-212ENST00000491769 DHX57Q6P158 1386 aaKnown RBP15.86■□□□□ 0.13
COL6A3-212ENST00000491769 TOM1L2Q6ZVM7 507 aa15.86■□□□□ 0.13
COL6A3-212ENST00000491769 CABP2Q9NPB3 220 aa15.85■□□□□ 0.13
COL6A3-212ENST00000491769 ATP2B1P20020 1258 aa15.85■□□□□ 0.13
COL6A3-212ENST00000491769 CENPQQ7L2Z9 268 aaPredicted RBP15.85■□□□□ 0.13
COL6A3-212ENST00000491769 SASS6Q6UVJ0 657 aa15.85■□□□□ 0.13
COL6A3-212ENST00000491769 RUFY1Q96T51 708 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 FAM161AQ3B820 660 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 CCDC73Q6ZRK6 1079 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 GGNBP2Q9H3C7 697 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 MPHOSPH10O00566 681 aaKnown RBP15.84■□□□□ 0.13
COL6A3-212ENST00000491769 GNAI1P63096 354 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 TXNDC2Q86VQ3 553 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 DZIP1LQ8IYY4 767 aaKnown RBP15.84■□□□□ 0.13
COL6A3-212ENST00000491769 FSD1Q9BTV5 496 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 CCDC88BA6NC98 1476 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 ZNF428Q96B54 188 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 GNL3LQ9NVN8 582 aaKnown RBP15.84■□□□□ 0.13
COL6A3-212ENST00000491769 RAPGEF2Q9Y4G8 1499 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 CRBNQ96SW2 442 aa15.84■□□□□ 0.13
COL6A3-212ENST00000491769 TTC39AQ5SRH9 613 aa15.83■□□□□ 0.13
COL6A3-212ENST00000491769 VSIG10Q8N0Z9 540 aa15.83■□□□□ 0.13
COL6A3-212ENST00000491769 TATP17735 454 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-212ENST00000491769 RDXP35241 583 aaKnown RBP15.83■□□□□ 0.12
COL6A3-212ENST00000491769 PLEKHO1Q53GL0 409 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-212ENST00000491769 OLFM4Q6UX06 510 aa15.82■□□□□ 0.12
COL6A3-212ENST00000491769 ZSCAN29Q8IWY8 852 aaPredicted RBP15.82■□□□□ 0.12
COL6A3-212ENST00000491769 IPO9Q96P70 1041 aaKnown RBP15.82■□□□□ 0.12
COL6A3-212ENST00000491769 SYCP1Q15431 976 aa15.82■□□□□ 0.12
COL6A3-212ENST00000491769 CABP4P57796 275 aa15.82■□□□□ 0.12
COL6A3-212ENST00000491769 MIA2Q96PC5 1412 aa15.82■□□□□ 0.12
COL6A3-212ENST00000491769 CCDC173Q0VFZ6 552 aa15.81■□□□□ 0.12
COL6A3-212ENST00000491769 PDILTQ8N807 584 aa15.81■□□□□ 0.12
COL6A3-212ENST00000491769 SMG6Q86US8 1419 aaKnown RBP15.81■□□□□ 0.12
COL6A3-212ENST00000491769 INTS3Q68E01 1043 aaKnown RBP15.81■□□□□ 0.12
COL6A3-212ENST00000491769 CDR1P51861 262 aa15.8■□□□□ 0.12
COL6A3-212ENST00000491769 TTLL5Q6EMB2 1281 aa15.8■□□□□ 0.12
COL6A3-212ENST00000491769 BICDL1Q6ZP65 573 aa15.8■□□□□ 0.12
COL6A3-212ENST00000491769 NINLQ9Y2I6 1382 aa15.8■□□□□ 0.12
COL6A3-212ENST00000491769 PPM1FP49593 454 aaPredicted RBP15.8■□□□□ 0.12
COL6A3-212ENST00000491769 SKOR2Q2VWA4 1001 aaPredicted RBP15.8■□□□□ 0.12
COL6A3-212ENST00000491769 TMEM132EQ6IEE7 984 aa15.79■□□□□ 0.12
COL6A3-212ENST00000491769 RUNDC1Q96C34 613 aa15.79■□□□□ 0.12
COL6A3-212ENST00000491769 PDCL3Q9H2J4 239 aa15.79■□□□□ 0.12
COL6A3-212ENST00000491769 ZHX3Q9H4I2 956 aa15.79■□□□□ 0.12
COL6A3-212ENST00000491769 AK7Q96M32 723 aa15.78■□□□□ 0.12
COL6A3-212ENST00000491769 CHMP4BP1P59074 171 aa15.78■□□□□ 0.12
COL6A3-212ENST00000491769 SKIDA1Q1XH10 827 aa15.78■□□□□ 0.12
COL6A3-212ENST00000491769 CAGE1Q8TC20 777 aa15.78■□□□□ 0.12
COL6A3-212ENST00000491769 CADPSQ9ULU8 1353 aa15.78■□□□□ 0.12
COL6A3-212ENST00000491769 CNTROBQ8N137 903 aa15.78■□□□□ 0.12
COL6A3-212ENST00000491769 CCDC158Q5M9N0 1113 aa15.77■□□□□ 0.12
COL6A3-212ENST00000491769 EXOC6Q8TAG9 804 aa15.77■□□□□ 0.11
COL6A3-212ENST00000491769 CCDC30Q5VVM6 783 aa15.77■□□□□ 0.11
COL6A3-212ENST00000491769 BCL11BQ9C0K0 894 aaPredicted RBP15.77■□□□□ 0.11
COL6A3-212ENST00000491769 MATR3P43243 847 aaKnown RBP eCLIP15.76■□□□□ 0.11
COL6A3-212ENST00000491769 USP47Q96K76 1375 aa15.76■□□□□ 0.11
COL6A3-212ENST00000491769 LNPKQ9C0E8 428 aa15.76■□□□□ 0.11
COL6A3-212ENST00000491769 MYCNP04198 464 aaPredicted RBP15.76■□□□□ 0.11
COL6A3-212ENST00000491769 TXLNAP40222 546 aa15.76■□□□□ 0.11
COL6A3-212ENST00000491769 PSMA5P28066 241 aa15.76■□□□□ 0.11
COL6A3-212ENST00000491769 GAS2L2Q8NHY3 880 aa15.75■□□□□ 0.11
COL6A3-212ENST00000491769 MAGEC2Q9UBF1 373 aaPredicted RBP15.75■□□□□ 0.11
COL6A3-212ENST00000491769 SURF6O75683 361 aaKnown RBP15.75■□□□□ 0.11
COL6A3-212ENST00000491769 CLASRPQ8N2M8 674 aaKnown RBP15.75■□□□□ 0.11
COL6A3-212ENST00000491769 MPHOSPH8Q99549 860 aa15.75■□□□□ 0.11
COL6A3-212ENST00000491769 CCDC97Q96F63 343 aaPredicted RBP15.74■□□□□ 0.11
COL6A3-212ENST00000491769 RRP1P56182 461 aaKnown RBP15.74■□□□□ 0.11
COL6A3-212ENST00000491769 SDF4Q9BRK5 362 aa15.74■□□□□ 0.11
COL6A3-212ENST00000491769 SPDYE4A6NLX3 237 aa15.73■□□□□ 0.11
COL6A3-212ENST00000491769 BRPF1P55201 1214 aaPredicted RBP15.73■□□□□ 0.11
COL6A3-212ENST00000491769 WDHD1O75717 1129 aaPredicted RBP15.73■□□□□ 0.11
COL6A3-212ENST00000491769 MYL6BP14649 208 aa15.73■□□□□ 0.11
COL6A3-212ENST00000491769 TTLL12Q14166 644 aaPredicted RBP15.73■□□□□ 0.11
COL6A3-212ENST00000491769 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.73■□□□□ 0.11
COL6A3-212ENST00000491769 NEBLO76041 1014 aa15.72■□□□□ 0.11
COL6A3-212ENST00000491769 MNS1Q8NEH6 495 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms