RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 PTPRMP28827 1452 aa13.63□□□□□ -0.23
HDAC9-225ENST00000490851 CABP2Q9NPB3 220 aa13.63□□□□□ -0.23
HDAC9-225ENST00000490851 PARD3Q8TEW0 1356 aa13.63□□□□□ -0.23
HDAC9-225ENST00000490851 TMEM2Q9UHN6 1383 aa13.63□□□□□ -0.23
HDAC9-225ENST00000490851 PDE4CQ08493 712 aa13.63□□□□□ -0.23
HDAC9-225ENST00000490851 SLC12A5Q9H2X9 1139 aa13.62□□□□□ -0.23
HDAC9-225ENST00000490851 EVC2Q86UK5 1308 aa13.62□□□□□ -0.23
HDAC9-225ENST00000490851 TULP4Q9NRJ4 1543 aa13.61□□□□□ -0.23
HDAC9-225ENST00000490851 HDGFP51858 240 aaKnown RBP13.61□□□□□ -0.23
HDAC9-225ENST00000490851 SRPK2P78362 688 aaKnown RBP13.61□□□□□ -0.23
HDAC9-225ENST00000490851 WAPLQ7Z5K2 1190 aa13.61□□□□□ -0.23
HDAC9-225ENST00000490851 NLRP1Q9C000 1473 aa13.61□□□□□ -0.23
HDAC9-225ENST00000490851 RIMS1Q86UR5 1692 aaKnown RBP13.61□□□□□ -0.23
HDAC9-225ENST00000490851 METP08581 1390 aa13.61□□□□□ -0.23
HDAC9-225ENST00000490851 LTKP29376 864 aa13.61□□□□□ -0.23
HDAC9-225ENST00000490851 NRXN3Q9Y4C0 1643 aa13.6□□□□□ -0.23
HDAC9-225ENST00000490851 TXNDC2Q86VQ3 553 aa13.6□□□□□ -0.23
HDAC9-225ENST00000490851 NLRP13Q86W25 1043 aa13.6□□□□□ -0.23
HDAC9-225ENST00000490851 CARD14Q9BXL6 1004 aa13.6□□□□□ -0.23
HDAC9-225ENST00000490851 BRD4O60885 1362 aaPredicted RBP13.59□□□□□ -0.23
HDAC9-225ENST00000490851 PLEKHH1Q9ULM0 1364 aa13.58□□□□□ -0.24
HDAC9-225ENST00000490851 SETD1AO15047 1707 aaKnown RBP13.58□□□□□ -0.24
HDAC9-225ENST00000490851 PNISRQ8TF01 805 aaKnown RBP13.58□□□□□ -0.24
HDAC9-225ENST00000490851 SLC26A8Q96RN1 970 aa13.58□□□□□ -0.24
HDAC9-225ENST00000490851 EID1Q9Y6B2 187 aa13.58□□□□□ -0.24
HDAC9-225ENST00000490851 LRPPRCP42704 1394 aaKnown RBP13.57□□□□□ -0.24
HDAC9-225ENST00000490851 ERICH6BQ5W0A0 696 aa13.56□□□□□ -0.24
HDAC9-225ENST00000490851 NSD3Q9BZ95 1437 aa13.56□□□□□ -0.24
HDAC9-225ENST00000490851 CDK19Q9BWU1 502 aa13.55□□□□□ -0.24
HDAC9-225ENST00000490851 PPP2R1AP30153 589 aa13.54□□□□□ -0.24
HDAC9-225ENST00000490851 THEMISQ8N1K5 641 aaPredicted RBP13.54□□□□□ -0.24
HDAC9-225ENST00000490851 TNNT2P45379 298 aaPredicted RBP13.54□□□□□ -0.24
HDAC9-225ENST00000490851 ABCC11Q96J66 1382 aa13.53□□□□□ -0.24
HDAC9-225ENST00000490851 PLEKHG1Q9ULL1 1385 aa13.53□□□□□ -0.24
HDAC9-225ENST00000490851 ADAMTS13Q76LX8 1427 aa13.53□□□□□ -0.24
HDAC9-225ENST00000490851 DLC1Q96QB1 1528 aa13.51□□□□□ -0.25
HDAC9-225ENST00000490851 SALL2Q9Y467 1007 aaPredicted RBP13.51□□□□□ -0.25
HDAC9-225ENST00000490851 CEP170BQ9Y4F5 1589 aaPredicted RBP13.51□□□□□ -0.25
HDAC9-225ENST00000490851 ZBED9Q6R2W3 1325 aa13.5□□□□□ -0.25
HDAC9-225ENST00000490851 ADAMTSL3P82987 1691 aa13.5□□□□□ -0.25
HDAC9-225ENST00000490851 ANKRD36BQ8N2N9 1353 aa13.5□□□□□ -0.25
HDAC9-225ENST00000490851 SLIT1O75093 1534 aa13.5□□□□□ -0.25
HDAC9-225ENST00000490851 MORC1Q86VD1 984 aa13.5□□□□□ -0.25
HDAC9-225ENST00000490851 A0A1W2PP64 1363 aa13.5□□□□□ -0.25
HDAC9-225ENST00000490851 ATAD2Q6PL18 1390 aa13.5□□□□□ -0.25
HDAC9-225ENST00000490851 ROBO2Q9HCK4 1378 aa13.5□□□□□ -0.25
HDAC9-225ENST00000490851 NPC1L1Q9UHC9 1359 aa13.5□□□□□ -0.25
HDAC9-225ENST00000490851 ARHGAP23Q9P227 1491 aa13.49□□□□□ -0.25
HDAC9-225ENST00000490851 PUS7Q96PZ0 661 aaKnown RBP13.49□□□□□ -0.25
HDAC9-225ENST00000490851 CABP1Q9NZU7 370 aa13.49□□□□□ -0.25
HDAC9-225ENST00000490851 CGNL1Q0VF96 1302 aa13.48□□□□□ -0.25
HDAC9-225ENST00000490851 NUTM2FA1L443 756 aa13.47□□□□□ -0.25
HDAC9-225ENST00000490851 WASLO00401 505 aaPredicted RBP13.47□□□□□ -0.25
HDAC9-225ENST00000490851 PTPRUQ92729 1446 aa13.47□□□□□ -0.25
HDAC9-225ENST00000490851 NCKAP5LQ9HCH0 1330 aa13.47□□□□□ -0.25
HDAC9-225ENST00000490851 TERF2IPQ9NYB0 399 aa13.47□□□□□ -0.25
HDAC9-225ENST00000490851 AMOTL2Q9Y2J4 779 aa13.47□□□□□ -0.25
HDAC9-225ENST00000490851 CPS1P31327 1500 aa13.46□□□□□ -0.25
HDAC9-225ENST00000490851 WDR43Q15061 677 aaKnown RBP eCLIP13.46□□□□□ -0.25
HDAC9-225ENST00000490851 KNDC1Q76NI1 1749 aa13.46□□□□□ -0.26
HDAC9-225ENST00000490851 HDGFL2Q7Z4V5 671 aaPredicted RBP13.45□□□□□ -0.26
HDAC9-225ENST00000490851 TECPR2O15040 1411 aa13.45□□□□□ -0.26
HDAC9-225ENST00000490851 NINLQ9Y2I6 1382 aa13.45□□□□□ -0.26
HDAC9-225ENST00000490851 FAM135BQ49AJ0 1406 aa13.45□□□□□ -0.26
HDAC9-225ENST00000490851 TAF7LQ5H9L4 462 aa13.45□□□□□ -0.26
HDAC9-225ENST00000490851 GGNBP2Q9H3C7 697 aa13.45□□□□□ -0.26
HDAC9-225ENST00000490851 ADAMTS8Q9UP79 889 aa13.45□□□□□ -0.26
HDAC9-225ENST00000490851 MED14O60244 1454 aa13.44□□□□□ -0.26
HDAC9-225ENST00000490851 CD163L1Q9NR16 1453 aa13.44□□□□□ -0.26
HDAC9-225ENST00000490851 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.44□□□□□ -0.26
HDAC9-225ENST00000490851 TBX22Q9Y458 520 aa13.44□□□□□ -0.26
HDAC9-225ENST00000490851 NPM2Q86SE8 214 aaKnown RBP13.43□□□□□ -0.26
HDAC9-225ENST00000490851 ANKLE2Q86XL3 938 aa13.43□□□□□ -0.26
HDAC9-225ENST00000490851 NUDT16Q96DE0 195 aaKnown RBP13.43□□□□□ -0.26
HDAC9-225ENST00000490851 FGD1P98174 961 aa13.43□□□□□ -0.26
HDAC9-225ENST00000490851 SUPT16HQ9Y5B9 1047 aaKnown RBP13.43□□□□□ -0.26
HDAC9-225ENST00000490851 PPIP5K1Q6PFW1 1433 aa13.43□□□□□ -0.26
HDAC9-225ENST00000490851 FKBP8Q14318 412 aa13.42□□□□□ -0.26
HDAC9-225ENST00000490851 SIRT1Q96EB6 747 aa13.42□□□□□ -0.26
HDAC9-225ENST00000490851 USP32Q8NFA0 1604 aa13.42□□□□□ -0.26
HDAC9-225ENST00000490851 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.41□□□□□ -0.26
HDAC9-225ENST00000490851 CCDC146Q8IYE0 955 aa13.41□□□□□ -0.26
HDAC9-225ENST00000490851 TAOK2Q9UL54 1235 aa13.41□□□□□ -0.26
HDAC9-225ENST00000490851 SETD1BQ9UPS6 1966 aaKnown RBP13.4□□□□□ -0.26
HDAC9-225ENST00000490851 ZNF142P52746 1687 aaPredicted RBP13.4□□□□□ -0.26
HDAC9-225ENST00000490851 PRR36Q9H6K5 1346 aa13.4□□□□□ -0.26
HDAC9-225ENST00000490851 KCNA6P17658 529 aa13.4□□□□□ -0.26
HDAC9-225ENST00000490851 FYB1O15117 783 aa13.4□□□□□ -0.26
HDAC9-225ENST00000490851 IRX6P78412 446 aaPredicted RBP13.4□□□□□ -0.26
HDAC9-225ENST00000490851 MTHFSP49914 203 aa13.39□□□□□ -0.27
HDAC9-225ENST00000490851 RBM33Q96EV2 1170 aaKnown RBP13.39□□□□□ -0.27
HDAC9-225ENST00000490851 BLMP54132 1417 aaPredicted RBP13.39□□□□□ -0.27
HDAC9-225ENST00000490851 CCDC61Q9Y6R9 512 aa13.39□□□□□ -0.27
HDAC9-225ENST00000490851 DIP2AQ14689 1571 aa13.39□□□□□ -0.27
HDAC9-225ENST00000490851 NSD2O96028 1365 aa13.38□□□□□ -0.27
HDAC9-225ENST00000490851 ATP7BP35670 1465 aa13.38□□□□□ -0.27
HDAC9-225ENST00000490851 PTCH1Q13635 1447 aa13.36□□□□□ -0.27
HDAC9-225ENST00000490851 FBLN1P23142 703 aa13.35□□□□□ -0.27
HDAC9-225ENST00000490851 NME9Q86XW9 330 aa13.35□□□□□ -0.27
HDAC9-225ENST00000490851 ZRANB1Q9UGI0 708 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms