RNA–Protein interactions for RNA: ENST00000490800.1

CLDN1-202, Transcript of claudin 1, humanhuman

TSL 2

Gene CLDN1, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-202ENST00000490800 TSPYL2Q9H2G4 693 aaPredicted RBP11.18□□□□□ -0.62
CLDN1-202ENST00000490800 GCC2Q8IWJ2 1684 aa11.17□□□□□ -0.62
CLDN1-202ENST00000490800 IQGAP3Q86VI3 1631 aa11.17□□□□□ -0.62
CLDN1-202ENST00000490800 FXR2P51116 673 aaKnown RBP eCLIP11.17□□□□□ -0.62
CLDN1-202ENST00000490800 ZNF326Q5BKZ1 582 aaKnown RBP11.17□□□□□ -0.62
CLDN1-202ENST00000490800 CFAP44Q96MT7 982 aa11.17□□□□□ -0.62
CLDN1-202ENST00000490800 FAM135BQ49AJ0 1406 aa11.17□□□□□ -0.62
CLDN1-202ENST00000490800 SETD5Q9C0A6 1442 aa11.17□□□□□ -0.62
CLDN1-202ENST00000490800 TRIM52Q96A61 297 aa11.16□□□□□ -0.62
CLDN1-202ENST00000490800 SLAIN2Q9P270 581 aa11.16□□□□□ -0.62
CLDN1-202ENST00000490800 XIRP1Q702N8 1843 aaKnown RBP11.16□□□□□ -0.62
CLDN1-202ENST00000490800 MYO5BQ9ULV0 1848 aa11.15□□□□□ -0.62
CLDN1-202ENST00000490800 HS6ST3Q8IZP7 471 aa11.15□□□□□ -0.62
CLDN1-202ENST00000490800 AMOTL2Q9Y2J4 779 aa11.15□□□□□ -0.62
CLDN1-202ENST00000490800 HFM1A2PYH4 1435 aa11.15□□□□□ -0.62
CLDN1-202ENST00000490800 NAIPQ13075 1403 aa11.15□□□□□ -0.62
CLDN1-202ENST00000490800 ADAMTS13Q76LX8 1427 aa11.15□□□□□ -0.62
CLDN1-202ENST00000490800 MSH6P52701 1360 aa11.15□□□□□ -0.63
CLDN1-202ENST00000490800 RAB3GAP2Q9H2M9 1393 aa11.15□□□□□ -0.63
CLDN1-202ENST00000490800 C14orf37Q86TY3 774 aa11.14□□□□□ -0.63
CLDN1-202ENST00000490800 MED1Q15648 1581 aaPredicted RBP11.14□□□□□ -0.63
CLDN1-202ENST00000490800 NKTRP30414 1462 aaKnown RBP11.13□□□□□ -0.63
CLDN1-202ENST00000490800 TAOK2Q9UL54 1235 aa11.13□□□□□ -0.63
CLDN1-202ENST00000490800 CHRM1P11229 460 aaPredicted RBP11.12□□□□□ -0.63
CLDN1-202ENST00000490800 HRCP23327 699 aa11.12□□□□□ -0.63
CLDN1-202ENST00000490800 PIP4P2Q8N4L2 257 aa11.12□□□□□ -0.63
CLDN1-202ENST00000490800 C19orf44Q9H6X5 657 aa11.12□□□□□ -0.63
CLDN1-202ENST00000490800 NWD1Q149M9 1564 aa11.11□□□□□ -0.63
CLDN1-202ENST00000490800 CCER1Q8TC90 406 aaPredicted RBP11.11□□□□□ -0.63
CLDN1-202ENST00000490800 PIK3R4Q99570 1358 aa11.11□□□□□ -0.63
CLDN1-202ENST00000490800 CHD2O14647 1828 aaKnown RBP11.11□□□□□ -0.63
CLDN1-202ENST00000490800 PTPRUQ92729 1446 aa11.1□□□□□ -0.63
CLDN1-202ENST00000490800 VGFO15240 615 aaPredicted RBP11.1□□□□□ -0.63
CLDN1-202ENST00000490800 ATF3P18847 181 aa11.1□□□□□ -0.63
CLDN1-202ENST00000490800 RGS17Q9UGC6 210 aaPredicted RBP11.1□□□□□ -0.63
CLDN1-202ENST00000490800 NCOA3Q9Y6Q9 1424 aa11.09□□□□□ -0.63
CLDN1-202ENST00000490800 STK25O00506 426 aa11.09□□□□□ -0.63
CLDN1-202ENST00000490800 CADPS2Q86UW7 1296 aa11.09□□□□□ -0.63
CLDN1-202ENST00000490800 SPRYD3Q8NCJ5 442 aa11.09□□□□□ -0.63
CLDN1-202ENST00000490800 METP08581 1390 aa11.08□□□□□ -0.64
CLDN1-202ENST00000490800 DHX57Q6P158 1386 aaKnown RBP11.08□□□□□ -0.64
CLDN1-202ENST00000490800 ROBO1Q9Y6N7 1651 aa11.08□□□□□ -0.64
CLDN1-202ENST00000490800 SPHKAPQ2M3C7 1700 aa11.06□□□□□ -0.64
CLDN1-202ENST00000490800 TRPM2O94759 1503 aa11.06□□□□□ -0.64
CLDN1-202ENST00000490800 DIP2AQ14689 1571 aa11.06□□□□□ -0.64
CLDN1-202ENST00000490800 CLTCL1P53675 1640 aa11.05□□□□□ -0.64
CLDN1-202ENST00000490800 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.04□□□□□ -0.64
CLDN1-202ENST00000490800 PAK3O75914 559 aaPredicted RBP11.04□□□□□ -0.64
CLDN1-202ENST00000490800 POTEAQ6S8J7 498 aa11.04□□□□□ -0.64
CLDN1-202ENST00000490800 BRINP3Q76B58 766 aa11.04□□□□□ -0.64
CLDN1-202ENST00000490800 ZFP91Q96JP5 570 aaPredicted RBP11.04□□□□□ -0.64
CLDN1-202ENST00000490800 MPHOSPH9Q99550 1183 aa11.04□□□□□ -0.64
CLDN1-202ENST00000490800 RPGRIP1LQ68CZ1 1315 aa11.04□□□□□ -0.64
CLDN1-202ENST00000490800 JCADQ9P266 1359 aa11.03□□□□□ -0.64
CLDN1-202ENST00000490800 SETBP1Q9Y6X0 1596 aa11.03□□□□□ -0.64
CLDN1-202ENST00000490800 NRXN3Q9Y4C0 1643 aa11.03□□□□□ -0.64
CLDN1-202ENST00000490800 ZEB1P37275 1124 aaPredicted RBP11.03□□□□□ -0.64
CLDN1-202ENST00000490800 RGL3Q3MIN7 710 aa11.03□□□□□ -0.64
CLDN1-202ENST00000490800 BCL11BQ9C0K0 894 aaPredicted RBP11.03□□□□□ -0.64
CLDN1-202ENST00000490800 NEXMIFQ5QGS0 1516 aa11.03□□□□□ -0.64
CLDN1-202ENST00000490800 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.02□□□□□ -0.65
CLDN1-202ENST00000490800 STK24Q9Y6E0 443 aa11.02□□□□□ -0.65
CLDN1-202ENST00000490800 CCDC61Q9Y6R9 512 aa11.01□□□□□ -0.65
CLDN1-202ENST00000490800 CLSPNQ9HAW4 1339 aa11.01□□□□□ -0.65
CLDN1-202ENST00000490800 ZNF467Q7Z7K2 595 aaPredicted RBP11□□□□□ -0.65
CLDN1-202ENST00000490800 PHLPP1O60346 1717 aa11□□□□□ -0.65
CLDN1-202ENST00000490800 NKX1-1Q15270 411 aaPredicted RBP10.99□□□□□ -0.65
CLDN1-202ENST00000490800 VSIG10Q8N0Z9 540 aa10.99□□□□□ -0.65
CLDN1-202ENST00000490800 DDX17Q92841 729 aaKnown RBP10.99□□□□□ -0.65
CLDN1-202ENST00000490800 KIF1BO60333 1816 aa10.99□□□□□ -0.65
CLDN1-202ENST00000490800 SPATA31A6Q5VVP1 1343 aa10.99□□□□□ -0.65
CLDN1-202ENST00000490800 ADGRF5Q8IZF2 1346 aa10.99□□□□□ -0.65
CLDN1-202ENST00000490800 ACIN1Q9UKV3 1341 aaKnown RBP10.99□□□□□ -0.65
CLDN1-202ENST00000490800 MST1RQ04912 1400 aa10.99□□□□□ -0.65
CLDN1-202ENST00000490800 NUTM2BA6NNL0 878 aaPredicted RBP10.98□□□□□ -0.65
CLDN1-202ENST00000490800 NUTM2EB1AL46 878 aaPredicted RBP10.98□□□□□ -0.65
CLDN1-202ENST00000490800 MEX3CQ5U5Q3 659 aaKnown RBP10.98□□□□□ -0.65
CLDN1-202ENST00000490800 NUTM2AQ8IVF1 878 aaPredicted RBP10.98□□□□□ -0.65
CLDN1-202ENST00000490800 TSHZ2Q9NRE2 1034 aa10.98□□□□□ -0.65
CLDN1-202ENST00000490800 PCDHB8Q9UN66 801 aa10.98□□□□□ -0.65
CLDN1-202ENST00000490800 PCDHB13Q9Y5F0 798 aa10.98□□□□□ -0.65
CLDN1-202ENST00000490800 ROBO2Q9HCK4 1378 aa10.98□□□□□ -0.65
CLDN1-202ENST00000490800 DCCP43146 1447 aa10.98□□□□□ -0.65
CLDN1-202ENST00000490800 XRN1Q8IZH2 1706 aaKnown RBP10.98□□□□□ -0.65
CLDN1-202ENST00000490800 LRRC59Q96AG4 307 aaKnown RBP10.97□□□□□ -0.65
CLDN1-202ENST00000490800 SGIP1Q9BQI5 828 aa10.97□□□□□ -0.65
CLDN1-202ENST00000490800 STK26Q9P289 416 aa10.97□□□□□ -0.65
CLDN1-202ENST00000490800 CCDC144AA2RUR9 1427 aa10.97□□□□□ -0.65
CLDN1-202ENST00000490800 ADGRL3Q9HAR2 1447 aa10.97□□□□□ -0.65
CLDN1-202ENST00000490800 COL16A1Q07092 1604 aaPredicted RBP10.97□□□□□ -0.65
CLDN1-202ENST00000490800 TMEM132EQ6IEE7 984 aa10.96□□□□□ -0.65
CLDN1-202ENST00000490800 ORAI2Q96SN7 254 aa10.96□□□□□ -0.65
CLDN1-202ENST00000490800 AHDC1Q5TGY3 1603 aaPredicted RBP10.95□□□□□ -0.66
CLDN1-202ENST00000490800 WAPLQ7Z5K2 1190 aa10.95□□□□□ -0.66
CLDN1-202ENST00000490800 LRP6O75581 1613 aa10.95□□□□□ -0.66
CLDN1-202ENST00000490800 SPATA31E1Q6ZUB1 1445 aa10.94□□□□□ -0.66
CLDN1-202ENST00000490800 CD44P16070 742 aaKnown RBP10.94□□□□□ -0.66
CLDN1-202ENST00000490800 ZNF772Q68DY9 489 aaPredicted RBP10.94□□□□□ -0.66
CLDN1-202ENST00000490800 ASXL1Q8IXJ9 1541 aa10.94□□□□□ -0.66
CLDN1-202ENST00000490800 C1orf167Q5SNV9 1468 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms