RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 ADGRF5Q8IZF2 1346 aa15.29■□□□□ 0.04
TTC28-207ENST00000490475 KNDC1Q76NI1 1749 aa15.28■□□□□ 0.04
TTC28-207ENST00000490475 PIK3C2GO75747 1445 aa15.27■□□□□ 0.04
TTC28-207ENST00000490475 AFF2P51816 1311 aa15.27■□□□□ 0.04
TTC28-207ENST00000490475 SIRT1Q96EB6 747 aa15.27■□□□□ 0.04
TTC28-207ENST00000490475 ORAI2Q96SN7 254 aa15.26■□□□□ 0.03
TTC28-207ENST00000490475 ESCO1Q5FWF5 840 aa15.25■□□□□ 0.03
TTC28-207ENST00000490475 DDX17Q92841 729 aaKnown RBP15.24■□□□□ 0.03
TTC28-207ENST00000490475 STAC3Q96MF2 364 aa15.24■□□□□ 0.03
TTC28-207ENST00000490475 C8orf37Q96NL8 207 aa15.24■□□□□ 0.03
TTC28-207ENST00000490475 MYOM2P54296 1465 aa15.24■□□□□ 0.03
TTC28-207ENST00000490475 DHX57Q6P158 1386 aaKnown RBP15.24■□□□□ 0.03
TTC28-207ENST00000490475 RBM6P78332 1123 aaKnown RBP15.23■□□□□ 0.03
TTC28-207ENST00000490475 NGLY1Q96IV0 654 aa15.23■□□□□ 0.03
TTC28-207ENST00000490475 C14orf93Q9H972 538 aaKnown RBP15.23■□□□□ 0.03
TTC28-207ENST00000490475 STK26Q9P289 416 aa15.23■□□□□ 0.03
TTC28-207ENST00000490475 YTHDC2Q9H6S0 1430 aaKnown RBP15.23■□□□□ 0.03
TTC28-207ENST00000490475 COL22A1Q8NFW1 1626 aaPredicted RBP15.22■□□□□ 0.03
TTC28-207ENST00000490475 HRCP23327 699 aa15.22■□□□□ 0.03
TTC28-207ENST00000490475 NRXN1Q9ULB1 1477 aa15.21■□□□□ 0.03
TTC28-207ENST00000490475 QTRT2Q9H974 415 aaKnown RBP15.21■□□□□ 0.03
TTC28-207ENST00000490475 RAB3GAP2Q9H2M9 1393 aa15.21■□□□□ 0.02
TTC28-207ENST00000490475 KIF1AQ12756 1690 aa15.2■□□□□ 0.02
TTC28-207ENST00000490475 TMEM132EQ6IEE7 984 aa15.2■□□□□ 0.02
TTC28-207ENST00000490475 WAPLQ7Z5K2 1190 aa15.2■□□□□ 0.02
TTC28-207ENST00000490475 FOXO3O43524 673 aa15.19■□□□□ 0.02
TTC28-207ENST00000490475 ADAMTS2O95450 1211 aa15.19■□□□□ 0.02
TTC28-207ENST00000490475 TRPC5Q9UL62 973 aaPredicted RBP15.19■□□□□ 0.02
TTC28-207ENST00000490475 FMN2Q9NZ56 1722 aa15.18■□□□□ 0.02
TTC28-207ENST00000490475 PXDNQ92626 1479 aa15.18■□□□□ 0.02
TTC28-207ENST00000490475 FNBP4Q8N3X1 1017 aaPredicted RBP15.17■□□□□ 0.02
TTC28-207ENST00000490475 UPF1Q92900 1129 aaKnown RBP eCLIP15.17■□□□□ 0.02
TTC28-207ENST00000490475 USP21Q9UK80 565 aa15.17■□□□□ 0.02
TTC28-207ENST00000490475 PSME1Q06323 249 aa15.16■□□□□ 0.02
TTC28-207ENST00000490475 DLC1Q96QB1 1528 aa15.16■□□□□ 0.02
TTC28-207ENST00000490475 EIF3AQ14152 1382 aaKnown RBP15.15■□□□□ 0.02
TTC28-207ENST00000490475 CFAP70Q5T0N1 1121 aa15.15■□□□□ 0.02
TTC28-207ENST00000490475 MARF1Q9Y4F3 1742 aaKnown RBP15.14■□□□□ 0.01
TTC28-207ENST00000490475 PLEKHH1Q9ULM0 1364 aa15.14■□□□□ 0.01
TTC28-207ENST00000490475 POGKQ9P215 609 aa15.14■□□□□ 0.01
TTC28-207ENST00000490475 NUTM2FA1L443 756 aa15.13■□□□□ 0.01
TTC28-207ENST00000490475 SPATA31A3Q5VYP0 1347 aa15.13■□□□□ 0.01
TTC28-207ENST00000490475 RGS12O14924 1447 aa15.12■□□□□ 0.01
TTC28-207ENST00000490475 ANKARQ7Z5J8 1434 aa15.12■□□□□ 0.01
TTC28-207ENST00000490475 PRAM1Q96QH2 718 aa15.12■□□□□ 0.01
TTC28-207ENST00000490475 PHF8Q9UPP1 1060 aa15.12■□□□□ 0.01
TTC28-207ENST00000490475 ATAD2Q6PL18 1390 aa15.11■□□□□ 0.01
TTC28-207ENST00000490475 ATRNO75882 1429 aa15.11■□□□□ 0.01
TTC28-207ENST00000490475 KRT28Q7Z3Y7 464 aa15.11■□□□□ 0.01
TTC28-207ENST00000490475 ADGRB2O60241 1585 aa15.11■□□□□ 0.01
TTC28-207ENST00000490475 ARHGEF10O15013 1369 aa15.11■□□□□ 0.01
TTC28-207ENST00000490475 XPCQ01831 940 aaPredicted RBP15.1■□□□□ 0.01
TTC28-207ENST00000490475 SBNO1A3KN83 1393 aa15.1■□□□□ 0.01
TTC28-207ENST00000490475 HAP1P54257 671 aaPredicted RBP15.09■□□□□ 0.01
TTC28-207ENST00000490475 DCAF11Q8TEB1 546 aa15.09■□□□□ 0.01
TTC28-207ENST00000490475 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.09■□□□□ 0.01
TTC28-207ENST00000490475 TNS3Q68CZ2 1445 aa15.09■□□□□ 0.01
TTC28-207ENST00000490475 ADGRB1O14514 1584 aa15.08■□□□□ 0
TTC28-207ENST00000490475 TRIM26Q12899 539 aaPredicted RBP15.08■□□□□ 0
TTC28-207ENST00000490475 RGPD8O14715 1765 aaPredicted RBP15.08■□□□□ 0
TTC28-207ENST00000490475 CCDC125Q86Z20 511 aa15.07■□□□□ 0
TTC28-207ENST00000490475 BCL9LQ86UU0 1499 aa15.07■□□□□ 0
TTC28-207ENST00000490475 SAFB2Q14151 953 aaKnown RBP eCLIP15.06■□□□□ 0
TTC28-207ENST00000490475 UNC5CLQ8IV45 518 aa15.06■□□□□ 0
TTC28-207ENST00000490475 GJD4Q96KN9 370 aaPredicted RBP15.06■□□□□ 0
TTC28-207ENST00000490475 TRAK1Q9UPV9 953 aa15.06■□□□□ 0
TTC28-207ENST00000490475 KDM2AQ9Y2K7 1162 aa15.06■□□□□ 0
TTC28-207ENST00000490475 GPRASP1Q5JY77 1395 aa15.06■□□□□ 0
TTC28-207ENST00000490475 USP32Q8NFA0 1604 aa15.06■□□□□ 0
TTC28-207ENST00000490475 SLIT2O94813 1529 aa15.04■□□□□ -0
TTC28-207ENST00000490475 TULP4Q9NRJ4 1543 aa15.03■□□□□ -0
TTC28-207ENST00000490475 NWD2Q9ULI1 1742 aa15.03■□□□□ -0
TTC28-207ENST00000490475 WASLO00401 505 aaPredicted RBP15.02■□□□□ -0
TTC28-207ENST00000490475 LMOD2Q6P5Q4 547 aa15.02■□□□□ -0
TTC28-207ENST00000490475 MINK1Q8N4C8 1332 aaPredicted RBP15.01□□□□□ -0.01
TTC28-207ENST00000490475 ITSN1Q15811 1721 aa15□□□□□ -0.01
TTC28-207ENST00000490475 KIAA1210Q9ULL0 1709 aa15□□□□□ -0.01
TTC28-207ENST00000490475 PMFBP1Q8TBY8 1022 aa15□□□□□ -0.01
TTC28-207ENST00000490475 VPS72Q15906 364 aa14.99□□□□□ -0.01
TTC28-207ENST00000490475 NGDNQ8NEJ9 315 aaKnown RBP14.99□□□□□ -0.01
TTC28-207ENST00000490475 HIRIP3Q9BW71 556 aaPredicted RBP14.99□□□□□ -0.01
TTC28-207ENST00000490475 ARHGEF28Q8N1W1 1705 aaKnown RBP14.98□□□□□ -0.01
TTC28-207ENST00000490475 RALGAPBQ86X10 1494 aa14.98□□□□□ -0.01
TTC28-207ENST00000490475 ABCA3Q99758 1704 aa14.97□□□□□ -0.01
TTC28-207ENST00000490475 TRPM3Q9HCF6 1732 aaPredicted RBP14.97□□□□□ -0.01
TTC28-207ENST00000490475 PLCH1Q4KWH8 1693 aa14.97□□□□□ -0.01
TTC28-207ENST00000490475 ALS2Q96Q42 1657 aa14.96□□□□□ -0.01
TTC28-207ENST00000490475 GLI3P10071 1580 aa14.95□□□□□ -0.02
TTC28-207ENST00000490475 ONECUT3O60422 494 aaPredicted RBP14.95□□□□□ -0.02
TTC28-207ENST00000490475 CABLES1Q8TDN4 633 aa14.95□□□□□ -0.02
TTC28-207ENST00000490475 CCDC9Q9Y3X0 531 aaKnown RBP14.95□□□□□ -0.02
TTC28-207ENST00000490475 PRR36Q9H6K5 1346 aa14.94□□□□□ -0.02
TTC28-207ENST00000490475 COL14A1Q05707 1796 aaKnown RBP14.94□□□□□ -0.02
TTC28-207ENST00000490475 SF3B2Q13435 895 aaKnown RBP14.94□□□□□ -0.02
TTC28-207ENST00000490475 NUDT16Q96DE0 195 aaKnown RBP14.94□□□□□ -0.02
TTC28-207ENST00000490475 ATP7BP35670 1465 aa14.94□□□□□ -0.02
TTC28-207ENST00000490475 BLMP54132 1417 aaPredicted RBP14.93□□□□□ -0.02
TTC28-207ENST00000490475 PAK3O75914 559 aaPredicted RBP14.93□□□□□ -0.02
TTC28-207ENST00000490475 ZRANB1Q9UGI0 708 aa14.93□□□□□ -0.02
TTC28-207ENST00000490475 CCDC61Q9Y6R9 512 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms