RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 DCCP43146 1447 aa15.47■□□□□ 0.07
VPS13D-210ENST00000489961 GPRASP1Q5JY77 1395 aa15.47■□□□□ 0.07
VPS13D-210ENST00000489961 PLEKHH1Q9ULM0 1364 aa15.47■□□□□ 0.07
VPS13D-210ENST00000489961 CADPS2Q86UW7 1296 aa15.46■□□□□ 0.07
VPS13D-210ENST00000489961 FBXO41Q8TF61 875 aa15.45■□□□□ 0.06
VPS13D-210ENST00000489961 CARD11Q9BXL7 1154 aa15.45■□□□□ 0.06
VPS13D-210ENST00000489961 SAFB2Q14151 953 aaKnown RBP eCLIP15.44■□□□□ 0.06
VPS13D-210ENST00000489961 EIF3AQ14152 1382 aaKnown RBP15.44■□□□□ 0.06
VPS13D-210ENST00000489961 CDC42BPGQ6DT37 1551 aa15.44■□□□□ 0.06
VPS13D-210ENST00000489961 SCAF1Q9H7N4 1312 aaKnown RBP15.42■□□□□ 0.06
VPS13D-210ENST00000489961 CENPJQ9HC77 1338 aaPredicted RBP15.42■□□□□ 0.06
VPS13D-210ENST00000489961 PIP4K2BP78356 416 aa15.41■□□□□ 0.06
VPS13D-210ENST00000489961 QRICH2Q9H0J4 1663 aa15.41■□□□□ 0.06
VPS13D-210ENST00000489961 MINK1Q8N4C8 1332 aaPredicted RBP15.41■□□□□ 0.06
VPS13D-210ENST00000489961 ADGRB2O60241 1585 aa15.41■□□□□ 0.06
VPS13D-210ENST00000489961 SLAIN2Q9P270 581 aa15.4■□□□□ 0.06
VPS13D-210ENST00000489961 FMN2Q9NZ56 1722 aa15.39■□□□□ 0.05
VPS13D-210ENST00000489961 MST1RQ04912 1400 aa15.38■□□□□ 0.05
VPS13D-210ENST00000489961 HIRIP3Q9BW71 556 aaPredicted RBP15.38■□□□□ 0.05
VPS13D-210ENST00000489961 ROBO1Q9Y6N7 1651 aa15.37■□□□□ 0.05
VPS13D-210ENST00000489961 C1orf167Q5SNV9 1468 aa15.35■□□□□ 0.05
VPS13D-210ENST00000489961 WASLO00401 505 aaPredicted RBP15.35■□□□□ 0.05
VPS13D-210ENST00000489961 USP47Q96K76 1375 aa15.35■□□□□ 0.05
VPS13D-210ENST00000489961 NUTM2FA1L443 756 aa15.33■□□□□ 0.04
VPS13D-210ENST00000489961 SBNO2Q9Y2G9 1366 aa15.33■□□□□ 0.04
VPS13D-210ENST00000489961 ANKARQ7Z5J8 1434 aa15.33■□□□□ 0.04
VPS13D-210ENST00000489961 TULP4Q9NRJ4 1543 aa15.33■□□□□ 0.04
VPS13D-210ENST00000489961 RGPD8O14715 1765 aaPredicted RBP15.32■□□□□ 0.04
VPS13D-210ENST00000489961 ST20-MTHFSA0A0A6YYL1 179 aa15.31■□□□□ 0.04
VPS13D-210ENST00000489961 SLC24A1O60721 1099 aa15.31■□□□□ 0.04
VPS13D-210ENST00000489961 ESCO1Q5FWF5 840 aa15.31■□□□□ 0.04
VPS13D-210ENST00000489961 BRINP3Q76B58 766 aa15.31■□□□□ 0.04
VPS13D-210ENST00000489961 ILDR1Q86SU0 546 aaPredicted RBP15.31■□□□□ 0.04
VPS13D-210ENST00000489961 CDK19Q9BWU1 502 aa15.31■□□□□ 0.04
VPS13D-210ENST00000489961 EVC2Q86UK5 1308 aa15.31■□□□□ 0.04
VPS13D-210ENST00000489961 SRPK2P78362 688 aaKnown RBP15.3■□□□□ 0.04
VPS13D-210ENST00000489961 KIF1AQ12756 1690 aa15.3■□□□□ 0.04
VPS13D-210ENST00000489961 ITSN1Q15811 1721 aa15.3■□□□□ 0.04
VPS13D-210ENST00000489961 USP32Q8NFA0 1604 aa15.3■□□□□ 0.04
VPS13D-210ENST00000489961 ORAI2Q96SN7 254 aa15.29■□□□□ 0.04
VPS13D-210ENST00000489961 EIF4G2P78344 907 aaKnown RBP eCLIP15.28■□□□□ 0.04
VPS13D-210ENST00000489961 PHLPP1O60346 1717 aa15.28■□□□□ 0.04
VPS13D-210ENST00000489961 NHSL1Q5SYE7 1610 aa15.28■□□□□ 0.04
VPS13D-210ENST00000489961 AHDC1Q5TGY3 1603 aaPredicted RBP15.28■□□□□ 0.04
VPS13D-210ENST00000489961 ATP7BP35670 1465 aa15.27■□□□□ 0.04
VPS13D-210ENST00000489961 PRR36Q9H6K5 1346 aa15.27■□□□□ 0.04
VPS13D-210ENST00000489961 NUDT16Q96DE0 195 aaKnown RBP15.27■□□□□ 0.04
VPS13D-210ENST00000489961 HSPA1LP34931 641 aa15.26■□□□□ 0.03
VPS13D-210ENST00000489961 ZEB1P37275 1124 aaPredicted RBP15.26■□□□□ 0.03
VPS13D-210ENST00000489961 TESK2Q96S53 571 aa15.26■□□□□ 0.03
VPS13D-210ENST00000489961 CABP2Q9NPB3 220 aa15.26■□□□□ 0.03
VPS13D-210ENST00000489961 PHF8Q9UPP1 1060 aa15.26■□□□□ 0.03
VPS13D-210ENST00000489961 TOPAZ1Q8N9V7 1692 aa15.25■□□□□ 0.03
VPS13D-210ENST00000489961 CCDC61Q9Y6R9 512 aa15.25■□□□□ 0.03
VPS13D-210ENST00000489961 NPHP3Q7Z494 1330 aa15.24■□□□□ 0.03
VPS13D-210ENST00000489961 HSPA5P11021 654 aaKnown RBP15.24■□□□□ 0.03
VPS13D-210ENST00000489961 TMF1P82094 1093 aa15.24■□□□□ 0.03
VPS13D-210ENST00000489961 ATAD2Q6PL18 1390 aa15.24■□□□□ 0.03
VPS13D-210ENST00000489961 FOXO3O43524 673 aa15.23■□□□□ 0.03
VPS13D-210ENST00000489961 PMFBP1Q8TBY8 1022 aa15.23■□□□□ 0.03
VPS13D-210ENST00000489961 COL16A1Q07092 1604 aaPredicted RBP15.23■□□□□ 0.03
VPS13D-210ENST00000489961 DDX17Q92841 729 aaKnown RBP15.22■□□□□ 0.03
VPS13D-210ENST00000489961 PUS7Q96PZ0 661 aaKnown RBP15.22■□□□□ 0.03
VPS13D-210ENST00000489961 PPIP5K1Q6PFW1 1433 aa15.22■□□□□ 0.03
VPS13D-210ENST00000489961 CDCA8Q53HL2 280 aa15.21■□□□□ 0.03
VPS13D-210ENST00000489961 NGDNQ8NEJ9 315 aaKnown RBP15.21■□□□□ 0.03
VPS13D-210ENST00000489961 PLEKHG3A1L390 1219 aa15.2■□□□□ 0.02
VPS13D-210ENST00000489961 PSME1Q06323 249 aa15.2■□□□□ 0.02
VPS13D-210ENST00000489961 SOS2Q07890 1332 aaPredicted RBP15.19■□□□□ 0.02
VPS13D-210ENST00000489961 KRT28Q7Z3Y7 464 aa15.19■□□□□ 0.02
VPS13D-210ENST00000489961 LRRC59Q96AG4 307 aaKnown RBP15.19■□□□□ 0.02
VPS13D-210ENST00000489961 DISP3Q9P2K9 1392 aa15.19■□□□□ 0.02
VPS13D-210ENST00000489961 PXDNQ92626 1479 aa15.19■□□□□ 0.02
VPS13D-210ENST00000489961 XPCQ01831 940 aaPredicted RBP15.18■□□□□ 0.02
VPS13D-210ENST00000489961 CABP1Q9NZU7 370 aa15.18■□□□□ 0.02
VPS13D-210ENST00000489961 ACEP12821 1306 aa15.17■□□□□ 0.02
VPS13D-210ENST00000489961 POLR3AO14802 1390 aaPredicted RBP15.17■□□□□ 0.02
VPS13D-210ENST00000489961 JCADQ9P266 1359 aa15.16■□□□□ 0.02
VPS13D-210ENST00000489961 NINLQ9Y2I6 1382 aa15.16■□□□□ 0.02
VPS13D-210ENST00000489961 TMC1Q8TDI8 760 aa15.16■□□□□ 0.02
VPS13D-210ENST00000489961 SHPRHQ149N8 1683 aa15.16■□□□□ 0.02
VPS13D-210ENST00000489961 AKAP12Q02952 1782 aa15.15■□□□□ 0.02
VPS13D-210ENST00000489961 TRPM3Q9HCF6 1732 aaPredicted RBP15.14■□□□□ 0.01
VPS13D-210ENST00000489961 SBNO1A3KN83 1393 aa15.14■□□□□ 0.01
VPS13D-210ENST00000489961 TNS3Q68CZ2 1445 aa15.13■□□□□ 0.01
VPS13D-210ENST00000489961 ZNF692Q9BU19 519 aaPredicted RBP15.13■□□□□ 0.01
VPS13D-210ENST00000489961 SLC12A5Q9H2X9 1139 aa15.13■□□□□ 0.01
VPS13D-210ENST00000489961 SPATA31A3Q5VYP0 1347 aa15.13■□□□□ 0.01
VPS13D-210ENST00000489961 BRD4O60885 1362 aaPredicted RBP15.12■□□□□ 0.01
VPS13D-210ENST00000489961 PAK3O75914 559 aaPredicted RBP15.12■□□□□ 0.01
VPS13D-210ENST00000489961 HDGFL2Q7Z4V5 671 aaPredicted RBP15.12■□□□□ 0.01
VPS13D-210ENST00000489961 POLR3GLQ9BT43 218 aa15.12■□□□□ 0.01
VPS13D-210ENST00000489961 TERF2IPQ9NYB0 399 aa15.12■□□□□ 0.01
VPS13D-210ENST00000489961 PNPLA6Q8IY17 1366 aa15.11■□□□□ 0.01
VPS13D-210ENST00000489961 USP6P35125 1406 aa15.11■□□□□ 0.01
VPS13D-210ENST00000489961 MON2Q7Z3U7 1717 aa15.11■□□□□ 0.01
VPS13D-210ENST00000489961 SPATA31A6Q5VVP1 1343 aa15.11■□□□□ 0.01
VPS13D-210ENST00000489961 ARHGEF10O15013 1369 aa15.11■□□□□ 0.01
VPS13D-210ENST00000489961 KTN1Q86UP2 1357 aaKnown RBP15.11■□□□□ 0.01
VPS13D-210ENST00000489961 COL22A1Q8NFW1 1626 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms