RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 MINK1Q8N4C8 1332 aaPredicted RBP28.85■■■□□ 2.21
SND1-214ENST00000489417 ROBO2Q9HCK4 1378 aa28.85■■■□□ 2.21
SND1-214ENST00000489417 HSPA2P54652 639 aa28.85■■■□□ 2.21
SND1-214ENST00000489417 MIER1Q8N108 512 aa28.84■■■□□ 2.21
SND1-214ENST00000489417 PTCH1Q13635 1447 aa28.84■■■□□ 2.21
SND1-214ENST00000489417 PUS7Q96PZ0 661 aaKnown RBP28.81■■■□□ 2.2
SND1-214ENST00000489417 MYOM1P52179 1685 aa28.8■■■□□ 2.2
SND1-214ENST00000489417 CHD2O14647 1828 aaKnown RBP28.79■■■□□ 2.2
SND1-214ENST00000489417 ANP32CO43423 234 aa28.76■■■□□ 2.19
SND1-214ENST00000489417 KCNA6P17658 529 aa28.75■■■□□ 2.19
SND1-214ENST00000489417 SRPK2P78362 688 aaKnown RBP28.73■■■□□ 2.19
SND1-214ENST00000489417 CABP2Q9NPB3 220 aa28.73■■■□□ 2.19
SND1-214ENST00000489417 ADGRB2O60241 1585 aa28.73■■■□□ 2.19
SND1-214ENST00000489417 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.72■■■□□ 2.19
SND1-214ENST00000489417 CDK19Q9BWU1 502 aa28.72■■■□□ 2.19
SND1-214ENST00000489417 PANK3Q9H999 370 aa28.72■■■□□ 2.19
SND1-214ENST00000489417 NWD1Q149M9 1564 aa28.71■■■□□ 2.19
SND1-214ENST00000489417 ATAD2Q6PL18 1390 aa28.71■■■□□ 2.19
SND1-214ENST00000489417 STRCQ7RTU9 1775 aa28.7■■■□□ 2.18
SND1-214ENST00000489417 WASLO00401 505 aaPredicted RBP28.69■■■□□ 2.18
SND1-214ENST00000489417 TMC1Q8TDI8 760 aa28.66■■■□□ 2.18
SND1-214ENST00000489417 NINLQ9Y2I6 1382 aa28.66■■■□□ 2.18
SND1-214ENST00000489417 PER1O15534 1290 aaPredicted RBP28.65■■■□□ 2.18
SND1-214ENST00000489417 SLC12A5Q9H2X9 1139 aa28.63■■■□□ 2.17
SND1-214ENST00000489417 NKTRP30414 1462 aaKnown RBP28.6■■■□□ 2.17
SND1-214ENST00000489417 PRKRIP1Q9H875 184 aaPredicted RBP28.6■■■□□ 2.17
SND1-214ENST00000489417 ANKRD36BQ8N2N9 1353 aa28.57■■■□□ 2.16
SND1-214ENST00000489417 KNSTRNQ9Y448 316 aa28.57■■■□□ 2.16
SND1-214ENST00000489417 NALCNQ8IZF0 1738 aa28.56■■■□□ 2.16
SND1-214ENST00000489417 ATP7BP35670 1465 aa28.55■■■□□ 2.16
SND1-214ENST00000489417 NUDT16Q96DE0 195 aaKnown RBP28.55■■■□□ 2.16
SND1-214ENST00000489417 CCER2I3L3R5 266 aa28.53■■■□□ 2.16
SND1-214ENST00000489417 CARD14Q9BXL6 1004 aa28.53■■■□□ 2.16
SND1-214ENST00000489417 KTN1Q86UP2 1357 aaKnown RBP28.53■■■□□ 2.16
SND1-214ENST00000489417 ADGRL3Q9HAR2 1447 aa28.53■■■□□ 2.16
SND1-214ENST00000489417 PRR36Q9H6K5 1346 aa28.52■■■□□ 2.16
SND1-214ENST00000489417 CDC42BPGQ6DT37 1551 aa28.52■■■□□ 2.16
SND1-214ENST00000489417 STRCP1A6NGW2 1772 aa28.52■■■□□ 2.16
SND1-214ENST00000489417 PPIP5K1Q6PFW1 1433 aa28.52■■■□□ 2.16
SND1-214ENST00000489417 NSD3Q9BZ95 1437 aa28.52■■■□□ 2.16
SND1-214ENST00000489417 CNGB1Q14028 1251 aaPredicted RBP28.52■■■□□ 2.16
SND1-214ENST00000489417 PROSER2Q86WR7 435 aaPredicted RBP28.52■■■□□ 2.16
SND1-214ENST00000489417 TERF2IPQ9NYB0 399 aa28.52■■■□□ 2.16
SND1-214ENST00000489417 CABP1Q9NZU7 370 aa28.52■■■□□ 2.16
SND1-214ENST00000489417 CD163L1Q9NR16 1453 aa28.51■■■□□ 2.15
SND1-214ENST00000489417 CCDC61Q9Y6R9 512 aa28.51■■■□□ 2.15
SND1-214ENST00000489417 A0A1W2PP64 1363 aa28.5■■■□□ 2.15
SND1-214ENST00000489417 AMER1Q5JTC6 1135 aaPredicted RBP28.5■■■□□ 2.15
SND1-214ENST00000489417 TOPAZ1Q8N9V7 1692 aa28.5■■■□□ 2.15
SND1-214ENST00000489417 NPC1L1Q9UHC9 1359 aa28.49■■■□□ 2.15
SND1-214ENST00000489417 FMN2Q9NZ56 1722 aa28.49■■■□□ 2.15
SND1-214ENST00000489417 RALBP1Q15311 655 aa28.49■■■□□ 2.15
SND1-214ENST00000489417 RBM33Q96EV2 1170 aaKnown RBP28.49■■■□□ 2.15
SND1-214ENST00000489417 USP32Q8NFA0 1604 aa28.48■■■□□ 2.15
SND1-214ENST00000489417 HDGFL2Q7Z4V5 671 aaPredicted RBP28.48■■■□□ 2.15
SND1-214ENST00000489417 DMRT2Q9Y5R5 561 aa28.48■■■□□ 2.15
SND1-214ENST00000489417 CC2D1BQ5T0F9 858 aaKnown RBP28.47■■■□□ 2.15
SND1-214ENST00000489417 ANKARQ7Z5J8 1434 aa28.47■■■□□ 2.15
SND1-214ENST00000489417 PARD3Q8TEW0 1356 aa28.47■■■□□ 2.15
SND1-214ENST00000489417 C14orf37Q86TY3 774 aa28.45■■■□□ 2.15
SND1-214ENST00000489417 NUTM2FA1L443 756 aa28.44■■■□□ 2.14
SND1-214ENST00000489417 ITSN1Q15811 1721 aa28.44■■■□□ 2.14
SND1-214ENST00000489417 NCOA3Q9Y6Q9 1424 aa28.44■■■□□ 2.14
SND1-214ENST00000489417 CPSF1Q10570 1443 aaKnown RBP28.42■■■□□ 2.14
SND1-214ENST00000489417 TMEM94Q12767 1356 aa28.42■■■□□ 2.14
SND1-214ENST00000489417 PLEKHG3A1L390 1219 aa28.41■■■□□ 2.14
SND1-214ENST00000489417 CGNL1Q0VF96 1302 aa28.39■■■□□ 2.14
SND1-214ENST00000489417 MYBBP1AQ9BQG0 1328 aaKnown RBP28.39■■■□□ 2.14
SND1-214ENST00000489417 ZNF335Q9H4Z2 1342 aaPredicted RBP28.39■■■□□ 2.13
SND1-214ENST00000489417 AKAP12Q02952 1782 aa28.38■■■□□ 2.13
SND1-214ENST00000489417 RGPD8O14715 1765 aaPredicted RBP28.36■■■□□ 2.13
SND1-214ENST00000489417 NSD2O96028 1365 aa28.36■■■□□ 2.13
SND1-214ENST00000489417 MON2Q7Z3U7 1717 aa28.36■■■□□ 2.13
SND1-214ENST00000489417 C19orf44Q9H6X5 657 aa28.35■■■□□ 2.13
SND1-214ENST00000489417 EDC4Q6P2E9 1401 aaKnown RBP28.35■■■□□ 2.13
SND1-214ENST00000489417 ZNF692Q9BU19 519 aaPredicted RBP28.35■■■□□ 2.13
SND1-214ENST00000489417 LRRC7Q96NW7 1537 aa28.34■■■□□ 2.13
SND1-214ENST00000489417 ACEP12821 1306 aa28.33■■■□□ 2.13
SND1-214ENST00000489417 DCCP43146 1447 aa28.32■■■□□ 2.12
SND1-214ENST00000489417 CCDC184Q52MB2 194 aa28.31■■■□□ 2.12
SND1-214ENST00000489417 POLR3AO14802 1390 aaPredicted RBP28.31■■■□□ 2.12
SND1-214ENST00000489417 NLRP13Q86W25 1043 aa28.3■■■□□ 2.12
SND1-214ENST00000489417 PMFBP1Q8TBY8 1022 aa28.3■■■□□ 2.12
SND1-214ENST00000489417 MRS2Q9HD23 443 aa28.3■■■□□ 2.12
SND1-214ENST00000489417 XIRP1Q702N8 1843 aaKnown RBP28.3■■■□□ 2.12
SND1-214ENST00000489417 KIF20BQ96Q89 1820 aa28.29■■■□□ 2.12
SND1-214ENST00000489417 BRD4O60885 1362 aaPredicted RBP28.28■■■□□ 2.12
SND1-214ENST00000489417 NRKQ7Z2Y5 1582 aa28.28■■■□□ 2.12
SND1-214ENST00000489417 USP6P35125 1406 aa28.28■■■□□ 2.12
SND1-214ENST00000489417 MSH6P52701 1360 aa28.28■■■□□ 2.12
SND1-214ENST00000489417 MORC1Q86VD1 984 aa28.27■■■□□ 2.12
SND1-214ENST00000489417 NGDNQ8NEJ9 315 aaKnown RBP28.27■■■□□ 2.12
SND1-214ENST00000489417 ANKRD26Q9UPS8 1709 aa28.27■■■□□ 2.12
SND1-214ENST00000489417 FYB1O15117 783 aa28.26■■■□□ 2.12
SND1-214ENST00000489417 ATF3P18847 181 aa28.26■■■□□ 2.12
SND1-214ENST00000489417 PHF8Q9UPP1 1060 aa28.26■■■□□ 2.12
SND1-214ENST00000489417 PPP2R1AP30153 589 aa28.26■■■□□ 2.11
SND1-214ENST00000489417 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.26■■■□□ 2.11
SND1-214ENST00000489417 GGNBP2Q9H3C7 697 aa28.25■■■□□ 2.11
SND1-214ENST00000489417 C1orf167Q5SNV9 1468 aa28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms