RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 COL22A1Q8NFW1 1626 aaPredicted RBP18.54■□□□□ 0.56
CPSF3-204ENST00000489403 RGL3Q3MIN7 710 aa18.54■□□□□ 0.56
CPSF3-204ENST00000489403 RGS12O14924 1447 aa18.54■□□□□ 0.56
CPSF3-204ENST00000489403 TECPR2O15040 1411 aa18.54■□□□□ 0.56
CPSF3-204ENST00000489403 ANKRD30BQ9BXX2 1392 aa18.54■□□□□ 0.56
CPSF3-204ENST00000489403 PIK3C2GO75747 1445 aa18.52■□□□□ 0.56
CPSF3-204ENST00000489403 ADAMTS2O95450 1211 aa18.52■□□□□ 0.56
CPSF3-204ENST00000489403 LRPPRCP42704 1394 aaKnown RBP18.52■□□□□ 0.55
CPSF3-204ENST00000489403 QTRT2Q9H974 415 aaKnown RBP18.51■□□□□ 0.55
CPSF3-204ENST00000489403 RBM6P78332 1123 aaKnown RBP18.5■□□□□ 0.55
CPSF3-204ENST00000489403 WAPLQ7Z5K2 1190 aa18.5■□□□□ 0.55
CPSF3-204ENST00000489403 STK26Q9P289 416 aa18.5■□□□□ 0.55
CPSF3-204ENST00000489403 PXDNQ92626 1479 aa18.5■□□□□ 0.55
CPSF3-204ENST00000489403 ESCO1Q5FWF5 840 aa18.49■□□□□ 0.55
CPSF3-204ENST00000489403 NGLY1Q96IV0 654 aa18.49■□□□□ 0.55
CPSF3-204ENST00000489403 ABCC11Q96J66 1382 aa18.49■□□□□ 0.55
CPSF3-204ENST00000489403 PLEKHH1Q9ULM0 1364 aa18.49■□□□□ 0.55
CPSF3-204ENST00000489403 MYOM2P54296 1465 aa18.49■□□□□ 0.55
CPSF3-204ENST00000489403 NPHP3Q7Z494 1330 aa18.49■□□□□ 0.55
CPSF3-204ENST00000489403 TMEM132EQ6IEE7 984 aa18.48■□□□□ 0.55
CPSF3-204ENST00000489403 FMN2Q9NZ56 1722 aa18.47■□□□□ 0.55
CPSF3-204ENST00000489403 YTHDC2Q9H6S0 1430 aaKnown RBP18.47■□□□□ 0.55
CPSF3-204ENST00000489403 NUTM2FA1L443 756 aa18.46■□□□□ 0.55
CPSF3-204ENST00000489403 MARF1Q9Y4F3 1742 aaKnown RBP18.46■□□□□ 0.55
CPSF3-204ENST00000489403 FOXO3O43524 673 aa18.45■□□□□ 0.54
CPSF3-204ENST00000489403 USP21Q9UK80 565 aa18.45■□□□□ 0.54
CPSF3-204ENST00000489403 NRXN1Q9ULB1 1477 aa18.45■□□□□ 0.54
CPSF3-204ENST00000489403 XPCQ01831 940 aaPredicted RBP18.44■□□□□ 0.54
CPSF3-204ENST00000489403 FNBP4Q8N3X1 1017 aaPredicted RBP18.44■□□□□ 0.54
CPSF3-204ENST00000489403 KIF1AQ12756 1690 aa18.44■□□□□ 0.54
CPSF3-204ENST00000489403 ATRNO75882 1429 aa18.42■□□□□ 0.54
CPSF3-204ENST00000489403 TRPC5Q9UL62 973 aaPredicted RBP18.42■□□□□ 0.54
CPSF3-204ENST00000489403 ACIN1Q9UKV3 1341 aaKnown RBP18.42■□□□□ 0.54
CPSF3-204ENST00000489403 C14orf93Q9H972 538 aaKnown RBP18.4■□□□□ 0.54
CPSF3-204ENST00000489403 RGPD8O14715 1765 aaPredicted RBP18.4■□□□□ 0.54
CPSF3-204ENST00000489403 CFAP70Q5T0N1 1121 aa18.39■□□□□ 0.53
CPSF3-204ENST00000489403 SIRT1Q96EB6 747 aa18.39■□□□□ 0.53
CPSF3-204ENST00000489403 BCL9LQ86UU0 1499 aa18.39■□□□□ 0.53
CPSF3-204ENST00000489403 RAB3GAP2Q9H2M9 1393 aa18.38■□□□□ 0.53
CPSF3-204ENST00000489403 DHX57Q6P158 1386 aaKnown RBP18.37■□□□□ 0.53
CPSF3-204ENST00000489403 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.37■□□□□ 0.53
CPSF3-204ENST00000489403 SPATA31A3Q5VYP0 1347 aa18.36■□□□□ 0.53
CPSF3-204ENST00000489403 ATAD2Q6PL18 1390 aa18.36■□□□□ 0.53
CPSF3-204ENST00000489403 USP32Q8NFA0 1604 aa18.34■□□□□ 0.53
CPSF3-204ENST00000489403 DLC1Q96QB1 1528 aa18.34■□□□□ 0.53
CPSF3-204ENST00000489403 ADGRB1O14514 1584 aa18.34■□□□□ 0.53
CPSF3-204ENST00000489403 KRT28Q7Z3Y7 464 aa18.33■□□□□ 0.52
CPSF3-204ENST00000489403 PRAM1Q96QH2 718 aa18.33■□□□□ 0.52
CPSF3-204ENST00000489403 SLIT2O94813 1529 aa18.33■□□□□ 0.52
CPSF3-204ENST00000489403 TNS3Q68CZ2 1445 aa18.32■□□□□ 0.52
CPSF3-204ENST00000489403 SAFB2Q14151 953 aaKnown RBP eCLIP18.32■□□□□ 0.52
CPSF3-204ENST00000489403 PHF8Q9UPP1 1060 aa18.32■□□□□ 0.52
CPSF3-204ENST00000489403 ADGRB2O60241 1585 aa18.32■□□□□ 0.52
CPSF3-204ENST00000489403 GJD4Q96KN9 370 aaPredicted RBP18.31■□□□□ 0.52
CPSF3-204ENST00000489403 ABCA3Q99758 1704 aa18.31■□□□□ 0.52
CPSF3-204ENST00000489403 GLI3P10071 1580 aa18.3■□□□□ 0.52
CPSF3-204ENST00000489403 EP400Q96L91 3159 aa18.3■□□□□ 0.52
CPSF3-204ENST00000489403 ANKARQ7Z5J8 1434 aa18.29■□□□□ 0.52
CPSF3-204ENST00000489403 RALGAPBQ86X10 1494 aa18.28■□□□□ 0.52
CPSF3-204ENST00000489403 UNC5CLQ8IV45 518 aa18.28■□□□□ 0.52
CPSF3-204ENST00000489403 SBNO1A3KN83 1393 aa18.28■□□□□ 0.52
CPSF3-204ENST00000489403 PLCH1Q4KWH8 1693 aa18.28■□□□□ 0.52
CPSF3-204ENST00000489403 PSME1Q06323 249 aa18.27■□□□□ 0.52
CPSF3-204ENST00000489403 POGKQ9P215 609 aa18.27■□□□□ 0.52
CPSF3-204ENST00000489403 TRAK1Q9UPV9 953 aa18.26■□□□□ 0.51
CPSF3-204ENST00000489403 NWD2Q9ULI1 1742 aa18.26■□□□□ 0.51
CPSF3-204ENST00000489403 PMFBP1Q8TBY8 1022 aa18.25■□□□□ 0.51
CPSF3-204ENST00000489403 CABLES1Q8TDN4 633 aa18.25■□□□□ 0.51
CPSF3-204ENST00000489403 TRPM3Q9HCF6 1732 aaPredicted RBP18.25■□□□□ 0.51
CPSF3-204ENST00000489403 HAP1P54257 671 aaPredicted RBP18.24■□□□□ 0.51
CPSF3-204ENST00000489403 KDM2AQ9Y2K7 1162 aa18.24■□□□□ 0.51
CPSF3-204ENST00000489403 ARHGEF10O15013 1369 aa18.24■□□□□ 0.51
CPSF3-204ENST00000489403 TULP4Q9NRJ4 1543 aa18.23■□□□□ 0.51
CPSF3-204ENST00000489403 BRWD3Q6RI45 1802 aa18.23■□□□□ 0.51
CPSF3-204ENST00000489403 PLEKHG5O94827 1062 aa18.23■□□□□ 0.51
CPSF3-204ENST00000489403 DCAF11Q8TEB1 546 aa18.23■□□□□ 0.51
CPSF3-204ENST00000489403 HIRIP3Q9BW71 556 aaPredicted RBP18.23■□□□□ 0.51
CPSF3-204ENST00000489403 ALS2Q96Q42 1657 aa18.22■□□□□ 0.51
CPSF3-204ENST00000489403 LMOD2Q6P5Q4 547 aa18.22■□□□□ 0.51
CPSF3-204ENST00000489403 MINK1Q8N4C8 1332 aaPredicted RBP18.22■□□□□ 0.51
CPSF3-204ENST00000489403 ARHGEF28Q8N1W1 1705 aaKnown RBP18.21■□□□□ 0.51
CPSF3-204ENST00000489403 PRR36Q9H6K5 1346 aa18.21■□□□□ 0.51
CPSF3-204ENST00000489403 EIF3AQ14152 1382 aaKnown RBP18.2■□□□□ 0.5
CPSF3-204ENST00000489403 VPS72Q15906 364 aa18.2■□□□□ 0.5
CPSF3-204ENST00000489403 CCDC125Q86Z20 511 aa18.2■□□□□ 0.5
CPSF3-204ENST00000489403 NRAPQ86VF7 1730 aa18.19■□□□□ 0.5
CPSF3-204ENST00000489403 HRCP23327 699 aa18.18■□□□□ 0.5
CPSF3-204ENST00000489403 STAC3Q96MF2 364 aa18.18■□□□□ 0.5
CPSF3-204ENST00000489403 CRYBG1Q9Y4K1 1723 aa18.18■□□□□ 0.5
CPSF3-204ENST00000489403 FAM83GA6ND36 823 aa18.17■□□□□ 0.5
CPSF3-204ENST00000489403 WASLO00401 505 aaPredicted RBP18.17■□□□□ 0.5
CPSF3-204ENST00000489403 GPRASP1Q5JY77 1395 aa18.17■□□□□ 0.5
CPSF3-204ENST00000489403 BLMP54132 1417 aaPredicted RBP18.16■□□□□ 0.5
CPSF3-204ENST00000489403 SEPT12Q8IYM1 358 aa18.16■□□□□ 0.5
CPSF3-204ENST00000489403 ITSN1Q15811 1721 aa18.15■□□□□ 0.5
CPSF3-204ENST00000489403 COL14A1Q05707 1796 aaKnown RBP18.15■□□□□ 0.5
CPSF3-204ENST00000489403 CCDC9Q9Y3X0 531 aaKnown RBP18.15■□□□□ 0.5
CPSF3-204ENST00000489403 ATP7BP35670 1465 aa18.14■□□□□ 0.5
CPSF3-204ENST00000489403 ONECUT3O60422 494 aaPredicted RBP18.14■□□□□ 0.49
CPSF3-204ENST00000489403 ZRANB1Q9UGI0 708 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms