RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 NKTRP30414 1462 aaKnown RBP22.09■■□□□ 1.13
SYNE1-227ENST00000489156 FAM135BQ49AJ0 1406 aa22.09■■□□□ 1.13
SYNE1-227ENST00000489156 KIF7Q2M1P5 1343 aa22.08■■□□□ 1.13
SYNE1-227ENST00000489156 CENPJQ9HC77 1338 aaPredicted RBP22.08■■□□□ 1.12
SYNE1-227ENST00000489156 QRICH2Q9H0J4 1663 aa22.07■■□□□ 1.12
SYNE1-227ENST00000489156 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.04■■□□□ 1.12
SYNE1-227ENST00000489156 LTBP4Q8N2S1 1624 aa22.04■■□□□ 1.12
SYNE1-227ENST00000489156 XIRP1Q702N8 1843 aaKnown RBP22.04■■□□□ 1.12
SYNE1-227ENST00000489156 MINK1Q8N4C8 1332 aaPredicted RBP22.03■■□□□ 1.12
SYNE1-227ENST00000489156 LRRC7Q96NW7 1537 aa22.03■■□□□ 1.12
SYNE1-227ENST00000489156 TMEM94Q12767 1356 aa22.03■■□□□ 1.12
SYNE1-227ENST00000489156 TESK2Q96S53 571 aa22.01■■□□□ 1.11
SYNE1-227ENST00000489156 C14orf37Q86TY3 774 aa22■■□□□ 1.11
SYNE1-227ENST00000489156 NALCNQ8IZF0 1738 aa22■■□□□ 1.11
SYNE1-227ENST00000489156 SLC24A1O60721 1099 aa21.98■■□□□ 1.11
SYNE1-227ENST00000489156 ANP32CO43423 234 aa21.98■■□□□ 1.11
SYNE1-227ENST00000489156 SBNO2Q9Y2G9 1366 aa21.96■■□□□ 1.11
SYNE1-227ENST00000489156 ADGRL3Q9HAR2 1447 aa21.96■■□□□ 1.11
SYNE1-227ENST00000489156 NCOA3Q9Y6Q9 1424 aa21.95■■□□□ 1.1
SYNE1-227ENST00000489156 TMF1P82094 1093 aa21.94■■□□□ 1.1
SYNE1-227ENST00000489156 C19orf44Q9H6X5 657 aa21.94■■□□□ 1.1
SYNE1-227ENST00000489156 ADGRB2O60241 1585 aa21.93■■□□□ 1.1
SYNE1-227ENST00000489156 TULP4Q9NRJ4 1543 aa21.92■■□□□ 1.1
SYNE1-227ENST00000489156 DISP3Q9P2K9 1392 aa21.92■■□□□ 1.1
SYNE1-227ENST00000489156 WASLO00401 505 aaPredicted RBP21.92■■□□□ 1.1
SYNE1-227ENST00000489156 CDK19Q9BWU1 502 aa21.92■■□□□ 1.1
SYNE1-227ENST00000489156 EVC2Q86UK5 1308 aa21.91■■□□□ 1.1
SYNE1-227ENST00000489156 MSH6P52701 1360 aa21.91■■□□□ 1.1
SYNE1-227ENST00000489156 NUTM2FA1L443 756 aa21.9■■□□□ 1.1
SYNE1-227ENST00000489156 SRPK2P78362 688 aaKnown RBP21.89■■□□□ 1.09
SYNE1-227ENST00000489156 CDCA8Q53HL2 280 aa21.89■■□□□ 1.09
SYNE1-227ENST00000489156 CABP2Q9NPB3 220 aa21.89■■□□□ 1.09
SYNE1-227ENST00000489156 CDC42BPGQ6DT37 1551 aa21.89■■□□□ 1.09
SYNE1-227ENST00000489156 CCER2I3L3R5 266 aa21.88■■□□□ 1.09
SYNE1-227ENST00000489156 ATF3P18847 181 aa21.88■■□□□ 1.09
SYNE1-227ENST00000489156 RGPD8O14715 1765 aaPredicted RBP21.87■■□□□ 1.09
SYNE1-227ENST00000489156 POLR3GLQ9BT43 218 aa21.87■■□□□ 1.09
SYNE1-227ENST00000489156 FMN2Q9NZ56 1722 aa21.87■■□□□ 1.09
SYNE1-227ENST00000489156 DCCP43146 1447 aa21.85■■□□□ 1.09
SYNE1-227ENST00000489156 CERKQ8TCT0 537 aa21.85■■□□□ 1.09
SYNE1-227ENST00000489156 CADPS2Q86UW7 1296 aa21.84■■□□□ 1.09
SYNE1-227ENST00000489156 PRR36Q9H6K5 1346 aa21.82■■□□□ 1.08
SYNE1-227ENST00000489156 USP32Q8NFA0 1604 aa21.82■■□□□ 1.08
SYNE1-227ENST00000489156 NUDT16Q96DE0 195 aaKnown RBP21.82■■□□□ 1.08
SYNE1-227ENST00000489156 ATP7BP35670 1465 aa21.8■■□□□ 1.08
SYNE1-227ENST00000489156 PUS7Q96PZ0 661 aaKnown RBP21.79■■□□□ 1.08
SYNE1-227ENST00000489156 PRKRIP1Q9H875 184 aaPredicted RBP21.79■■□□□ 1.08
SYNE1-227ENST00000489156 MST1RQ04912 1400 aa21.79■■□□□ 1.08
SYNE1-227ENST00000489156 ANKARQ7Z5J8 1434 aa21.78■■□□□ 1.08
SYNE1-227ENST00000489156 SLAIN2Q9P270 581 aa21.77■■□□□ 1.08
SYNE1-227ENST00000489156 CCDC61Q9Y6R9 512 aa21.77■■□□□ 1.08
SYNE1-227ENST00000489156 ATAD2Q6PL18 1390 aa21.77■■□□□ 1.08
SYNE1-227ENST00000489156 IQSEC2Q5JU85 1478 aa21.77■■□□□ 1.08
SYNE1-227ENST00000489156 C1orf167Q5SNV9 1468 aa21.77■■□□□ 1.08
SYNE1-227ENST00000489156 TMC1Q8TDI8 760 aa21.77■■□□□ 1.08
SYNE1-227ENST00000489156 ESCO1Q5FWF5 840 aa21.76■■□□□ 1.07
SYNE1-227ENST00000489156 ORAI2Q96SN7 254 aa21.76■■□□□ 1.07
SYNE1-227ENST00000489156 ITSN1Q15811 1721 aa21.76■■□□□ 1.07
SYNE1-227ENST00000489156 CABP1Q9NZU7 370 aa21.75■■□□□ 1.07
SYNE1-227ENST00000489156 TOPAZ1Q8N9V7 1692 aa21.75■■□□□ 1.07
SYNE1-227ENST00000489156 SLC12A5Q9H2X9 1139 aa21.75■■□□□ 1.07
SYNE1-227ENST00000489156 MYOM1P52179 1685 aa21.74■■□□□ 1.07
SYNE1-227ENST00000489156 PPIP5K1Q6PFW1 1433 aa21.74■■□□□ 1.07
SYNE1-227ENST00000489156 PMFBP1Q8TBY8 1022 aa21.73■■□□□ 1.07
SYNE1-227ENST00000489156 KTN1Q86UP2 1357 aaKnown RBP21.73■■□□□ 1.07
SYNE1-227ENST00000489156 TOM1O60784 492 aa21.73■■□□□ 1.07
SYNE1-227ENST00000489156 UBAP1LF5GYI3 381 aa21.72■■□□□ 1.07
SYNE1-227ENST00000489156 PER1O15534 1290 aaPredicted RBP21.71■■□□□ 1.07
SYNE1-227ENST00000489156 PHF8Q9UPP1 1060 aa21.71■■□□□ 1.07
SYNE1-227ENST00000489156 CENPBP07199 599 aaPredicted RBP21.7■■□□□ 1.06
SYNE1-227ENST00000489156 PLEKHG3A1L390 1219 aa21.69■■□□□ 1.06
SYNE1-227ENST00000489156 PANK3Q9H999 370 aa21.69■■□□□ 1.06
SYNE1-227ENST00000489156 BRINP3Q76B58 766 aa21.69■■□□□ 1.06
SYNE1-227ENST00000489156 PIP4K2BP78356 416 aa21.68■■□□□ 1.06
SYNE1-227ENST00000489156 YTHDC1Q96MU7 727 aaKnown RBP21.68■■□□□ 1.06
SYNE1-227ENST00000489156 ACEP12821 1306 aa21.68■■□□□ 1.06
SYNE1-227ENST00000489156 NINLQ9Y2I6 1382 aa21.67■■□□□ 1.06
SYNE1-227ENST00000489156 NGDNQ8NEJ9 315 aaKnown RBP21.67■■□□□ 1.06
SYNE1-227ENST00000489156 ROBO1Q9Y6N7 1651 aa21.66■■□□□ 1.06
SYNE1-227ENST00000489156 SCAF1Q9H7N4 1312 aaKnown RBP21.66■■□□□ 1.06
SYNE1-227ENST00000489156 FOXO3O43524 673 aa21.66■■□□□ 1.06
SYNE1-227ENST00000489156 RALBP1Q15311 655 aa21.66■■□□□ 1.06
SYNE1-227ENST00000489156 KIF1AQ12756 1690 aa21.66■■□□□ 1.06
SYNE1-227ENST00000489156 CD163L1Q9NR16 1453 aa21.65■■□□□ 1.06
SYNE1-227ENST00000489156 DDX17Q92841 729 aaKnown RBP21.65■■□□□ 1.06
SYNE1-227ENST00000489156 AKAP12Q02952 1782 aa21.64■■□□□ 1.06
SYNE1-227ENST00000489156 TERF2IPQ9NYB0 399 aa21.64■■□□□ 1.05
SYNE1-227ENST00000489156 A0A1W2PP64 1363 aa21.63■■□□□ 1.05
SYNE1-227ENST00000489156 POLR3AO14802 1390 aaPredicted RBP21.63■■□□□ 1.05
SYNE1-227ENST00000489156 HDGFL2Q7Z4V5 671 aaPredicted RBP21.62■■□□□ 1.05
SYNE1-227ENST00000489156 CPSF1Q10570 1443 aaKnown RBP21.62■■□□□ 1.05
SYNE1-227ENST00000489156 ANKRD36BQ8N2N9 1353 aa21.62■■□□□ 1.05
SYNE1-227ENST00000489156 XPCQ01831 940 aaPredicted RBP21.61■■□□□ 1.05
SYNE1-227ENST00000489156 PSME1Q06323 249 aa21.61■■□□□ 1.05
SYNE1-227ENST00000489156 ZNF692Q9BU19 519 aaPredicted RBP21.6■■□□□ 1.05
SYNE1-227ENST00000489156 MON2Q7Z3U7 1717 aa21.6■■□□□ 1.05
SYNE1-227ENST00000489156 CARD14Q9BXL6 1004 aa21.6■■□□□ 1.05
SYNE1-227ENST00000489156 KNSTRNQ9Y448 316 aa21.6■■□□□ 1.05
SYNE1-227ENST00000489156 NPHP3Q7Z494 1330 aa21.59■■□□□ 1.05
SYNE1-227ENST00000489156 PARD3Q8TEW0 1356 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms