RNA–Protein interactions for RNA: ENST00000488920.2

CCHCR1-215, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 715 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-215ENST00000488920 NUTM2FA1L443 756 aa17.52■□□□□ 0.4
CCHCR1-215ENST00000488920 ESCO1Q5FWF5 840 aa17.52■□□□□ 0.4
CCHCR1-215ENST00000488920 KDM2AQ9Y2K7 1162 aa17.52■□□□□ 0.4
CCHCR1-215ENST00000488920 YTHDC2Q9H6S0 1430 aaKnown RBP17.52■□□□□ 0.4
CCHCR1-215ENST00000488920 TECPR2O15040 1411 aa17.51■□□□□ 0.39
CCHCR1-215ENST00000488920 IFT172Q9UG01 1749 aa17.51■□□□□ 0.39
CCHCR1-215ENST00000488920 ZNF772Q68DY9 489 aaPredicted RBP17.49■□□□□ 0.39
CCHCR1-215ENST00000488920 DCAF11Q8TEB1 546 aa17.49■□□□□ 0.39
CCHCR1-215ENST00000488920 SIRT1Q96EB6 747 aa17.49■□□□□ 0.39
CCHCR1-215ENST00000488920 DHX57Q6P158 1386 aaKnown RBP17.49■□□□□ 0.39
CCHCR1-215ENST00000488920 PNPLA6Q8IY17 1366 aa17.49■□□□□ 0.39
CCHCR1-215ENST00000488920 NRXN1Q9ULB1 1477 aa17.49■□□□□ 0.39
CCHCR1-215ENST00000488920 SHPRHQ149N8 1683 aa17.48■□□□□ 0.39
CCHCR1-215ENST00000488920 SOS2Q07890 1332 aaPredicted RBP17.48■□□□□ 0.39
CCHCR1-215ENST00000488920 NHSL1Q5SYE7 1610 aa17.48■□□□□ 0.39
CCHCR1-215ENST00000488920 MYOM2P54296 1465 aa17.48■□□□□ 0.39
CCHCR1-215ENST00000488920 FOXO3O43524 673 aa17.47■□□□□ 0.39
CCHCR1-215ENST00000488920 SAFB2Q14151 953 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCHCR1-215ENST00000488920 XPCQ01831 940 aaPredicted RBP17.46■□□□□ 0.39
CCHCR1-215ENST00000488920 C8orf37Q96NL8 207 aa17.46■□□□□ 0.39
CCHCR1-215ENST00000488920 PRAM1Q96QH2 718 aa17.46■□□□□ 0.39
CCHCR1-215ENST00000488920 ADAMTS2O95450 1211 aa17.45■□□□□ 0.38
CCHCR1-215ENST00000488920 AFF2P51816 1311 aa17.45■□□□□ 0.38
CCHCR1-215ENST00000488920 NPHP3Q7Z494 1330 aa17.45■□□□□ 0.38
CCHCR1-215ENST00000488920 CDC42BPGQ6DT37 1551 aa17.45■□□□□ 0.38
CCHCR1-215ENST00000488920 POGKQ9P215 609 aa17.44■□□□□ 0.38
CCHCR1-215ENST00000488920 TRAK1Q9UPV9 953 aa17.43■□□□□ 0.38
CCHCR1-215ENST00000488920 NGLY1Q96IV0 654 aa17.42■□□□□ 0.38
CCHCR1-215ENST00000488920 RXRBP28702 533 aa17.41■□□□□ 0.38
CCHCR1-215ENST00000488920 STAC3Q96MF2 364 aa17.41■□□□□ 0.38
CCHCR1-215ENST00000488920 LAMC1P11047 1609 aa17.4■□□□□ 0.38
CCHCR1-215ENST00000488920 KNDC1Q76NI1 1749 aa17.4■□□□□ 0.38
CCHCR1-215ENST00000488920 QTRT2Q9H974 415 aaKnown RBP17.39■□□□□ 0.37
CCHCR1-215ENST00000488920 HIRIP3Q9BW71 556 aaPredicted RBP17.38■□□□□ 0.37
CCHCR1-215ENST00000488920 PHF8Q9UPP1 1060 aa17.38■□□□□ 0.37
CCHCR1-215ENST00000488920 PXDNQ92626 1479 aa17.37■□□□□ 0.37
CCHCR1-215ENST00000488920 KRT28Q7Z3Y7 464 aa17.37■□□□□ 0.37
CCHCR1-215ENST00000488920 ADGRB1O14514 1584 aa17.36■□□□□ 0.37
CCHCR1-215ENST00000488920 MINK1Q8N4C8 1332 aaPredicted RBP17.36■□□□□ 0.37
CCHCR1-215ENST00000488920 DLC1Q96QB1 1528 aa17.34■□□□□ 0.37
CCHCR1-215ENST00000488920 USP21Q9UK80 565 aa17.34■□□□□ 0.37
CCHCR1-215ENST00000488920 FMN2Q9NZ56 1722 aa17.33■□□□□ 0.37
CCHCR1-215ENST00000488920 SPATA31A3Q5VYP0 1347 aa17.33■□□□□ 0.36
CCHCR1-215ENST00000488920 PSME1Q06323 249 aa17.33■□□□□ 0.36
CCHCR1-215ENST00000488920 PMFBP1Q8TBY8 1022 aa17.33■□□□□ 0.36
CCHCR1-215ENST00000488920 RBM6P78332 1123 aaKnown RBP17.32■□□□□ 0.36
CCHCR1-215ENST00000488920 FNBP4Q8N3X1 1017 aaPredicted RBP17.32■□□□□ 0.36
CCHCR1-215ENST00000488920 PLEKHG5O94827 1062 aa17.31■□□□□ 0.36
CCHCR1-215ENST00000488920 WASLO00401 505 aaPredicted RBP17.3■□□□□ 0.36
CCHCR1-215ENST00000488920 LMOD2Q6P5Q4 547 aa17.3■□□□□ 0.36
CCHCR1-215ENST00000488920 NBPF1Q3BBV0 1214 aa17.29■□□□□ 0.36
CCHCR1-215ENST00000488920 TRPC5Q9UL62 973 aaPredicted RBP17.29■□□□□ 0.36
CCHCR1-215ENST00000488920 COL22A1Q8NFW1 1626 aaPredicted RBP17.29■□□□□ 0.36
CCHCR1-215ENST00000488920 PRR36Q9H6K5 1346 aa17.28■□□□□ 0.36
CCHCR1-215ENST00000488920 CABLES1Q8TDN4 633 aa17.28■□□□□ 0.36
CCHCR1-215ENST00000488920 UPF1Q92900 1129 aaKnown RBP eCLIP17.28■□□□□ 0.36
CCHCR1-215ENST00000488920 ANKARQ7Z5J8 1434 aa17.28■□□□□ 0.36
CCHCR1-215ENST00000488920 CDK12Q9NYV4 1490 aaPredicted RBP17.27■□□□□ 0.36
CCHCR1-215ENST00000488920 SIN3AQ96ST3 1273 aa17.27■□□□□ 0.36
CCHCR1-215ENST00000488920 KIF1AQ12756 1690 aa17.26■□□□□ 0.35
CCHCR1-215ENST00000488920 HAP1P54257 671 aaPredicted RBP17.26■□□□□ 0.35
CCHCR1-215ENST00000488920 SBNO1A3KN83 1393 aa17.26■□□□□ 0.35
CCHCR1-215ENST00000488920 TNS3Q68CZ2 1445 aa17.25■□□□□ 0.35
CCHCR1-215ENST00000488920 NEUROD1Q13562 356 aa17.25■□□□□ 0.35
CCHCR1-215ENST00000488920 L3MBTL2Q969R5 705 aa17.25■□□□□ 0.35
CCHCR1-215ENST00000488920 EIF3AQ14152 1382 aaKnown RBP17.25■□□□□ 0.35
CCHCR1-215ENST00000488920 RGPD8O14715 1765 aaPredicted RBP17.25■□□□□ 0.35
CCHCR1-215ENST00000488920 ADGRB2O60241 1585 aa17.24■□□□□ 0.35
CCHCR1-215ENST00000488920 RGS12O14924 1447 aa17.24■□□□□ 0.35
CCHCR1-215ENST00000488920 NGDNQ8NEJ9 315 aaKnown RBP17.24■□□□□ 0.35
CCHCR1-215ENST00000488920 CDK19Q9BWU1 502 aa17.24■□□□□ 0.35
CCHCR1-215ENST00000488920 BCL9LQ86UU0 1499 aa17.24■□□□□ 0.35
CCHCR1-215ENST00000488920 USP32Q8NFA0 1604 aa17.23■□□□□ 0.35
CCHCR1-215ENST00000488920 NUDT16Q96DE0 195 aaKnown RBP17.23■□□□□ 0.35
CCHCR1-215ENST00000488920 ATRNO75882 1429 aa17.22■□□□□ 0.35
CCHCR1-215ENST00000488920 GPRASP1Q5JY77 1395 aa17.22■□□□□ 0.35
CCHCR1-215ENST00000488920 ARHGEF10O15013 1369 aa17.21■□□□□ 0.35
CCHCR1-215ENST00000488920 UNC5CLQ8IV45 518 aa17.21■□□□□ 0.35
CCHCR1-215ENST00000488920 TULP4Q9NRJ4 1543 aa17.21■□□□□ 0.34
CCHCR1-215ENST00000488920 PAK3O75914 559 aaPredicted RBP17.2■□□□□ 0.34
CCHCR1-215ENST00000488920 GJD4Q96KN9 370 aaPredicted RBP17.2■□□□□ 0.34
CCHCR1-215ENST00000488920 FAM83GA6ND36 823 aa17.18■□□□□ 0.34
CCHCR1-215ENST00000488920 SLIT2O94813 1529 aa17.16■□□□□ 0.34
CCHCR1-215ENST00000488920 ARHGEF28Q8N1W1 1705 aaKnown RBP17.16■□□□□ 0.34
CCHCR1-215ENST00000488920 CCDC61Q9Y6R9 512 aa17.16■□□□□ 0.34
CCHCR1-215ENST00000488920 CENPJQ9HC77 1338 aaPredicted RBP17.16■□□□□ 0.34
CCHCR1-215ENST00000488920 ATP7BP35670 1465 aa17.15■□□□□ 0.34
CCHCR1-215ENST00000488920 KIAA1210Q9ULL0 1709 aa17.15■□□□□ 0.34
CCHCR1-215ENST00000488920 SRPK2P78362 688 aaKnown RBP17.14■□□□□ 0.33
CCHCR1-215ENST00000488920 NBPF8Q3BBV2 869 aa17.14■□□□□ 0.33
CCHCR1-215ENST00000488920 CABP2Q9NPB3 220 aa17.14■□□□□ 0.33
CCHCR1-215ENST00000488920 CCDC9Q9Y3X0 531 aaKnown RBP17.14■□□□□ 0.33
CCHCR1-215ENST00000488920 ACEP12821 1306 aa17.14■□□□□ 0.33
CCHCR1-215ENST00000488920 PLEKHG3A1L390 1219 aa17.13■□□□□ 0.33
CCHCR1-215ENST00000488920 ATAD2Q6PL18 1390 aa17.13■□□□□ 0.33
CCHCR1-215ENST00000488920 MARF1Q9Y4F3 1742 aaKnown RBP17.13■□□□□ 0.33
CCHCR1-215ENST00000488920 VPS72Q15906 364 aa17.12■□□□□ 0.33
CCHCR1-215ENST00000488920 NUTM2GQ5VZR2 741 aa17.12■□□□□ 0.33
CCHCR1-215ENST00000488920 RALGAPBQ86X10 1494 aa17.12■□□□□ 0.33
CCHCR1-215ENST00000488920 BTG4Q9NY30 223 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms