RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 SOS2Q07890 1332 aaPredicted RBP27.51■■□□□ 1.99
HDAC6-231ENST00000488905 PIK3C2GO75747 1445 aa27.5■■□□□ 1.99
HDAC6-231ENST00000488905 RGL3Q3MIN7 710 aa27.49■■□□□ 1.99
HDAC6-231ENST00000488905 C8orf37Q96NL8 207 aa27.49■■□□□ 1.99
HDAC6-231ENST00000488905 LRPPRCP42704 1394 aaKnown RBP27.47■■□□□ 1.99
HDAC6-231ENST00000488905 FMN2Q9NZ56 1722 aa27.46■■□□□ 1.99
HDAC6-231ENST00000488905 MARF1Q9Y4F3 1742 aaKnown RBP27.44■■□□□ 1.98
HDAC6-231ENST00000488905 PXDNQ92626 1479 aa27.44■■□□□ 1.98
HDAC6-231ENST00000488905 RGS12O14924 1447 aa27.43■■□□□ 1.98
HDAC6-231ENST00000488905 UPF1Q92900 1129 aaKnown RBP eCLIP27.42■■□□□ 1.98
HDAC6-231ENST00000488905 STK26Q9P289 416 aa27.42■■□□□ 1.98
HDAC6-231ENST00000488905 ABCC11Q96J66 1382 aa27.42■■□□□ 1.98
HDAC6-231ENST00000488905 ADAMTS2O95450 1211 aa27.41■■□□□ 1.98
HDAC6-231ENST00000488905 YTHDC2Q9H6S0 1430 aaKnown RBP27.41■■□□□ 1.98
HDAC6-231ENST00000488905 NPHP3Q7Z494 1330 aa27.41■■□□□ 1.98
HDAC6-231ENST00000488905 ACIN1Q9UKV3 1341 aaKnown RBP27.41■■□□□ 1.98
HDAC6-231ENST00000488905 KIF1AQ12756 1690 aa27.4■■□□□ 1.98
HDAC6-231ENST00000488905 MYOM2P54296 1465 aa27.4■■□□□ 1.98
HDAC6-231ENST00000488905 NRXN1Q9ULB1 1477 aa27.39■■□□□ 1.98
HDAC6-231ENST00000488905 PLEKHH1Q9ULM0 1364 aa27.39■■□□□ 1.98
HDAC6-231ENST00000488905 ESCO1Q5FWF5 840 aa27.39■■□□□ 1.98
HDAC6-231ENST00000488905 WAPLQ7Z5K2 1190 aa27.39■■□□□ 1.98
HDAC6-231ENST00000488905 TMEM132EQ6IEE7 984 aa27.38■■□□□ 1.97
HDAC6-231ENST00000488905 NGLY1Q96IV0 654 aa27.38■■□□□ 1.97
HDAC6-231ENST00000488905 QTRT2Q9H974 415 aaKnown RBP27.38■■□□□ 1.97
HDAC6-231ENST00000488905 RBM6P78332 1123 aaKnown RBP27.37■■□□□ 1.97
HDAC6-231ENST00000488905 RGPD8O14715 1765 aaPredicted RBP27.35■■□□□ 1.97
HDAC6-231ENST00000488905 NUTM2FA1L443 756 aa27.32■■□□□ 1.96
HDAC6-231ENST00000488905 RAB3GAP2Q9H2M9 1393 aa27.32■■□□□ 1.96
HDAC6-231ENST00000488905 EP400Q96L91 3159 aa27.31■■□□□ 1.96
HDAC6-231ENST00000488905 FOXO3O43524 673 aa27.31■■□□□ 1.96
HDAC6-231ENST00000488905 XPCQ01831 940 aaPredicted RBP27.3■■□□□ 1.96
HDAC6-231ENST00000488905 USP21Q9UK80 565 aa27.3■■□□□ 1.96
HDAC6-231ENST00000488905 C14orf93Q9H972 538 aaKnown RBP27.29■■□□□ 1.96
HDAC6-231ENST00000488905 ATRNO75882 1429 aa27.29■■□□□ 1.96
HDAC6-231ENST00000488905 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.29■■□□□ 1.96
HDAC6-231ENST00000488905 FNBP4Q8N3X1 1017 aaPredicted RBP27.28■■□□□ 1.96
HDAC6-231ENST00000488905 TRPC5Q9UL62 973 aaPredicted RBP27.27■■□□□ 1.96
HDAC6-231ENST00000488905 SIRT1Q96EB6 747 aa27.26■■□□□ 1.95
HDAC6-231ENST00000488905 DLC1Q96QB1 1528 aa27.26■■□□□ 1.95
HDAC6-231ENST00000488905 DHX57Q6P158 1386 aaKnown RBP27.25■■□□□ 1.95
HDAC6-231ENST00000488905 CFAP70Q5T0N1 1121 aa27.24■■□□□ 1.95
HDAC6-231ENST00000488905 USP32Q8NFA0 1604 aa27.23■■□□□ 1.95
HDAC6-231ENST00000488905 ADGRB2O60241 1585 aa27.23■■□□□ 1.95
HDAC6-231ENST00000488905 BCL9LQ86UU0 1499 aa27.23■■□□□ 1.95
HDAC6-231ENST00000488905 ADGRB1O14514 1584 aa27.22■■□□□ 1.95
HDAC6-231ENST00000488905 ABCA3Q99758 1704 aa27.21■■□□□ 1.95
HDAC6-231ENST00000488905 SPATA31A3Q5VYP0 1347 aa27.2■■□□□ 1.95
HDAC6-231ENST00000488905 ATAD2Q6PL18 1390 aa27.2■■□□□ 1.94
HDAC6-231ENST00000488905 TNS3Q68CZ2 1445 aa27.18■■□□□ 1.94
HDAC6-231ENST00000488905 PRAM1Q96QH2 718 aa27.18■■□□□ 1.94
HDAC6-231ENST00000488905 PLCH1Q4KWH8 1693 aa27.15■■□□□ 1.94
HDAC6-231ENST00000488905 SAFB2Q14151 953 aaKnown RBP eCLIP27.15■■□□□ 1.94
HDAC6-231ENST00000488905 KRT28Q7Z3Y7 464 aa27.15■■□□□ 1.94
HDAC6-231ENST00000488905 PHF8Q9UPP1 1060 aa27.15■■□□□ 1.94
HDAC6-231ENST00000488905 SLIT2O94813 1529 aa27.15■■□□□ 1.94
HDAC6-231ENST00000488905 ANKARQ7Z5J8 1434 aa27.15■■□□□ 1.94
HDAC6-231ENST00000488905 GLI3P10071 1580 aa27.13■■□□□ 1.93
HDAC6-231ENST00000488905 NWD2Q9ULI1 1742 aa27.13■■□□□ 1.93
HDAC6-231ENST00000488905 TRPM3Q9HCF6 1732 aaPredicted RBP27.11■■□□□ 1.93
HDAC6-231ENST00000488905 SRCAPQ6ZRS2 3230 aa27.11■■□□□ 1.93
HDAC6-231ENST00000488905 SBNO1A3KN83 1393 aa27.1■■□□□ 1.93
HDAC6-231ENST00000488905 POGKQ9P215 609 aa27.1■■□□□ 1.93
HDAC6-231ENST00000488905 ARHGEF28Q8N1W1 1705 aaKnown RBP27.1■■□□□ 1.93
HDAC6-231ENST00000488905 RALGAPBQ86X10 1494 aa27.09■■□□□ 1.93
HDAC6-231ENST00000488905 PSME1Q06323 249 aa27.09■■□□□ 1.93
HDAC6-231ENST00000488905 GJD4Q96KN9 370 aaPredicted RBP27.08■■□□□ 1.93
HDAC6-231ENST00000488905 BRWD3Q6RI45 1802 aa27.08■■□□□ 1.93
HDAC6-231ENST00000488905 TULP4Q9NRJ4 1543 aa27.07■■□□□ 1.92
HDAC6-231ENST00000488905 UNC5CLQ8IV45 518 aa27.07■■□□□ 1.92
HDAC6-231ENST00000488905 ALS2Q96Q42 1657 aa27.07■■□□□ 1.92
HDAC6-231ENST00000488905 ARHGEF10O15013 1369 aa27.07■■□□□ 1.92
HDAC6-231ENST00000488905 TRAK1Q9UPV9 953 aa27.06■■□□□ 1.92
HDAC6-231ENST00000488905 EIF3AQ14152 1382 aaKnown RBP27.05■■□□□ 1.92
HDAC6-231ENST00000488905 ITSN1Q15811 1721 aa27.04■■□□□ 1.92
HDAC6-231ENST00000488905 HAP1P54257 671 aaPredicted RBP27.04■■□□□ 1.92
HDAC6-231ENST00000488905 DCAF11Q8TEB1 546 aa27.04■■□□□ 1.92
HDAC6-231ENST00000488905 KDM2AQ9Y2K7 1162 aa27.03■■□□□ 1.92
HDAC6-231ENST00000488905 PMFBP1Q8TBY8 1022 aa27.02■■□□□ 1.92
HDAC6-231ENST00000488905 HIRIP3Q9BW71 556 aaPredicted RBP27.02■■□□□ 1.92
HDAC6-231ENST00000488905 NRAPQ86VF7 1730 aa27.02■■□□□ 1.92
HDAC6-231ENST00000488905 HRCP23327 699 aa27.01■■□□□ 1.91
HDAC6-231ENST00000488905 CABLES1Q8TDN4 633 aa27.01■■□□□ 1.91
HDAC6-231ENST00000488905 CRYBG1Q9Y4K1 1723 aa27.01■■□□□ 1.91
HDAC6-231ENST00000488905 MINK1Q8N4C8 1332 aaPredicted RBP27■■□□□ 1.91
HDAC6-231ENST00000488905 LMOD2Q6P5Q4 547 aa27■■□□□ 1.91
HDAC6-231ENST00000488905 STAC3Q96MF2 364 aa27■■□□□ 1.91
HDAC6-231ENST00000488905 PRR36Q9H6K5 1346 aa26.98■■□□□ 1.91
HDAC6-231ENST00000488905 PLEKHG5O94827 1062 aa26.98■■□□□ 1.91
HDAC6-231ENST00000488905 KIAA1210Q9ULL0 1709 aa26.98■■□□□ 1.91
HDAC6-231ENST00000488905 COL14A1Q05707 1796 aaKnown RBP26.96■■□□□ 1.91
HDAC6-231ENST00000488905 GPRASP1Q5JY77 1395 aa26.96■■□□□ 1.91
HDAC6-231ENST00000488905 ATP7BP35670 1465 aa26.94■■□□□ 1.9
HDAC6-231ENST00000488905 WASLO00401 505 aaPredicted RBP26.94■■□□□ 1.9
HDAC6-231ENST00000488905 VPS72Q15906 364 aa26.94■■□□□ 1.9
HDAC6-231ENST00000488905 TOPAZ1Q8N9V7 1692 aa26.93■■□□□ 1.9
HDAC6-231ENST00000488905 CCDC125Q86Z20 511 aa26.93■■□□□ 1.9
HDAC6-231ENST00000488905 BLMP54132 1417 aaPredicted RBP26.9■■□□□ 1.9
HDAC6-231ENST00000488905 PHRF1Q9P1Y6 1649 aaKnown RBP26.88■■□□□ 1.89
HDAC6-231ENST00000488905 FAM83GA6ND36 823 aa26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms