RNA–Protein interactions for RNA: ENST00000487890.5

GPNMB-212, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-212ENST00000487890 ZSWIM6Q9HCJ5 1215 aa5.67□□□□□ -1.5
GPNMB-212ENST00000487890 CARNS1A5YM72 827 aa5.66□□□□□ -1.5
GPNMB-212ENST00000487890 MFAP1P55081 439 aaKnown RBP5.66□□□□□ -1.5
GPNMB-212ENST00000487890 USP46P62068 366 aa5.66□□□□□ -1.5
GPNMB-212ENST00000487890 LRRN4Q8WUT4 740 aa5.66□□□□□ -1.5
GPNMB-212ENST00000487890 RIMBP2O15034 1052 aa5.65□□□□□ -1.5
GPNMB-212ENST00000487890 SLC10A3P09131 477 aa5.65□□□□□ -1.5
GPNMB-212ENST00000487890 VAC14Q08AM6 782 aa5.65□□□□□ -1.5
GPNMB-212ENST00000487890 WASHC4Q2M389 1173 aa5.65□□□□□ -1.5
GPNMB-212ENST00000487890 PPP1R12CQ9BZL4 782 aa5.65□□□□□ -1.5
GPNMB-212ENST00000487890 PSDA5PKW4 1024 aaPredicted RBP5.64□□□□□ -1.51
GPNMB-212ENST00000487890 PDE4CQ08493 712 aa5.64□□□□□ -1.51
GPNMB-212ENST00000487890 EPS8L1Q8TE68 723 aa5.64□□□□□ -1.51
GPNMB-212ENST00000487890 ALG2Q9H553 416 aa5.64□□□□□ -1.51
GPNMB-212ENST00000487890 CFAP99D6REC4 459 aa5.63□□□□□ -1.51
GPNMB-212ENST00000487890 SWT1Q5T5J6 900 aaKnown RBP5.63□□□□□ -1.51
GPNMB-212ENST00000487890 FOXD4L5Q5VV16 416 aaPredicted RBP5.63□□□□□ -1.51
GPNMB-212ENST00000487890 FOXD4L4Q8WXT5 416 aaPredicted RBP5.63□□□□□ -1.51
GPNMB-212ENST00000487890 KIAA1468Q9P260 1216 aa5.63□□□□□ -1.51
GPNMB-212ENST00000487890 PALM3A6NDB9 673 aaPredicted RBP5.62□□□□□ -1.51
GPNMB-212ENST00000487890 BRD1O95696 1058 aa5.62□□□□□ -1.51
GPNMB-212ENST00000487890 CSB-PGBD3P0DP91 1061 aa5.62□□□□□ -1.51
GPNMB-212ENST00000487890 MTMR2Q13614 643 aa5.62□□□□□ -1.51
GPNMB-212ENST00000487890 CDCA8Q53HL2 280 aa5.62□□□□□ -1.51
GPNMB-212ENST00000487890 RSPH4AQ5TD94 716 aa5.62□□□□□ -1.51
GPNMB-212ENST00000487890 TSC1Q92574 1164 aa5.62□□□□□ -1.51
GPNMB-212ENST00000487890 ZNF428Q96B54 188 aa5.62□□□□□ -1.51
GPNMB-212ENST00000487890 TFIP11Q9UBB9 837 aaKnown RBP5.62□□□□□ -1.51
GPNMB-212ENST00000487890 LMOD1P29536 600 aaPredicted RBP5.61□□□□□ -1.51
GPNMB-212ENST00000487890 KCNA1Q09470 495 aa5.61□□□□□ -1.51
GPNMB-212ENST00000487890 HELBQ8NG08 1087 aaPredicted RBP5.61□□□□□ -1.51
GPNMB-212ENST00000487890 PRR7Q8TB68 274 aa5.61□□□□□ -1.51
GPNMB-212ENST00000487890 UCN2Q96RP3 112 aa5.61□□□□□ -1.51
GPNMB-212ENST00000487890 KCNK17Q96T54 332 aa5.61□□□□□ -1.51
GPNMB-212ENST00000487890 USTQ9Y2C2 406 aa5.61□□□□□ -1.51
GPNMB-212ENST00000487890 POTEB2H3BUK9 544 aa5.6□□□□□ -1.51
GPNMB-212ENST00000487890 SYMPKQ92797 1274 aaKnown RBP5.6□□□□□ -1.51
GPNMB-212ENST00000487890 C6orf229H3BNL8 230 aa5.59□□□□□ -1.51
GPNMB-212ENST00000487890 FUT2Q10981 343 aa5.59□□□□□ -1.51
GPNMB-212ENST00000487890 NR6A1Q15406 480 aa5.59□□□□□ -1.51
GPNMB-212ENST00000487890 ZBED2Q9BTP6 218 aa5.59□□□□□ -1.51
GPNMB-212ENST00000487890 PATL2C9JE40 543 aaKnown RBP5.58□□□□□ -1.52
GPNMB-212ENST00000487890 PER1O15534 1290 aaPredicted RBP5.58□□□□□ -1.52
GPNMB-212ENST00000487890 SEPT9Q9UHD8 586 aaPredicted RBP5.58□□□□□ -1.52
GPNMB-212ENST00000487890 TMEM88BA6NKF7 163 aa5.57□□□□□ -1.52
GPNMB-212ENST00000487890 ATG7O95352 703 aa5.57□□□□□ -1.52
GPNMB-212ENST00000487890 HOXB1P14653 301 aaPredicted RBP5.57□□□□□ -1.52
GPNMB-212ENST00000487890 RBM25P49756 843 aaKnown RBP5.57□□□□□ -1.52
GPNMB-212ENST00000487890 PSEN2P49810 448 aa5.57□□□□□ -1.52
GPNMB-212ENST00000487890 TBC1D9Q6ZT07 1266 aa5.57□□□□□ -1.52
GPNMB-212ENST00000487890 VRTNQ9H8Y1 702 aa5.57□□□□□ -1.52
GPNMB-212ENST00000487890 MAFBQ9Y5Q3 323 aaPredicted RBP5.57□□□□□ -1.52
GPNMB-212ENST00000487890 SEMA3FQ13275 785 aa5.56□□□□□ -1.52
GPNMB-212ENST00000487890 SLF2Q8IX21 1173 aa5.56□□□□□ -1.52
GPNMB-212ENST00000487890 IVNS1ABPQ9Y6Y0 642 aa5.56□□□□□ -1.52
GPNMB-212ENST00000487890 CFHP08603 1231 aa5.55□□□□□ -1.52
GPNMB-212ENST00000487890 SOX11P35716 441 aa5.55□□□□□ -1.52
GPNMB-212ENST00000487890 ATP6V1AP38606 617 aa5.55□□□□□ -1.52
GPNMB-212ENST00000487890 GRIPAP1Q4V328 841 aa5.55□□□□□ -1.52
GPNMB-212ENST00000487890 SAMD7Q7Z3H4 446 aa5.55□□□□□ -1.52
GPNMB-212ENST00000487890 RABGEF1Q9UJ41 708 aa5.55□□□□□ -1.52
GPNMB-212ENST00000487890 HDGFP51858 240 aaKnown RBP5.54□□□□□ -1.52
GPNMB-212ENST00000487890 ATP9BO43861 1147 aa5.53□□□□□ -1.52
GPNMB-212ENST00000487890 KANK4Q5T7N3 995 aaPredicted RBP5.53□□□□□ -1.52
GPNMB-212ENST00000487890 DMRTA1Q5VZB9 504 aa5.53□□□□□ -1.52
GPNMB-212ENST00000487890 POTEEQ6S8J3 1075 aa5.53□□□□□ -1.52
GPNMB-212ENST00000487890 KCNH8Q96L42 1107 aa5.53□□□□□ -1.52
GPNMB-212ENST00000487890 SMARCA4P51532 1647 aa5.52□□□□□ -1.53
GPNMB-212ENST00000487890 PIK3CDO00329 1044 aa5.52□□□□□ -1.53
GPNMB-212ENST00000487890 EIF4G2P78344 907 aaKnown RBP eCLIP5.52□□□□□ -1.53
GPNMB-212ENST00000487890 NR1H3Q13133 447 aa5.52□□□□□ -1.53
GPNMB-212ENST00000487890 FAM98CQ17RN3 349 aaKnown RBP5.52□□□□□ -1.53
GPNMB-212ENST00000487890 PUS10Q3MIT2 529 aaKnown RBP5.52□□□□□ -1.53
GPNMB-212ENST00000487890 MORN1Q5T089 497 aa5.52□□□□□ -1.53
GPNMB-212ENST00000487890 RETREG3Q86VR2 466 aa5.52□□□□□ -1.53
GPNMB-212ENST00000487890 PNMA1Q8ND90 353 aa5.52□□□□□ -1.53
GPNMB-212ENST00000487890 SLC4A5Q9BY07 1137 aa5.52□□□□□ -1.53
GPNMB-212ENST00000487890 SCUBE2Q9NQ36 999 aa5.52□□□□□ -1.53
GPNMB-212ENST00000487890 ARHGAP33O14559 1287 aa5.51□□□□□ -1.53
GPNMB-212ENST00000487890 CCDC27Q2M243 656 aa5.51□□□□□ -1.53
GPNMB-212ENST00000487890 LHX8Q68G74 356 aa5.51□□□□□ -1.53
GPNMB-212ENST00000487890 LYPD8Q6UX82 237 aa5.51□□□□□ -1.53
GPNMB-212ENST00000487890 SND1Q7KZF4 910 aaKnown RBP eCLIP5.51□□□□□ -1.53
GPNMB-212ENST00000487890 SLC27A5Q9Y2P5 690 aa5.51□□□□□ -1.53
GPNMB-212ENST00000487890 AXIN2Q9Y2T1 843 aa5.51□□□□□ -1.53
GPNMB-212ENST00000487890 SNPHO15079 494 aa5.5□□□□□ -1.53
GPNMB-212ENST00000487890 RNF40O75150 1001 aa5.5□□□□□ -1.53
GPNMB-212ENST00000487890 FBXO45P0C2W1 286 aa5.5□□□□□ -1.53
GPNMB-212ENST00000487890 SLC4A3P48751 1232 aa5.5□□□□□ -1.53
GPNMB-212ENST00000487890 DESI1Q6ICB0 168 aa5.5□□□□□ -1.53
GPNMB-212ENST00000487890 MAMSTRQ6ZN01 415 aa5.5□□□□□ -1.53
GPNMB-212ENST00000487890 ZMIZ1Q9ULJ6 1067 aa5.5□□□□□ -1.53
GPNMB-212ENST00000487890 VPS9D1Q9Y2B5 631 aa5.5□□□□□ -1.53
GPNMB-212ENST00000487890 SMARCA2P51531 1590 aa5.5□□□□□ -1.53
GPNMB-212ENST00000487890 E9PSI1 815 aa5.49□□□□□ -1.53
GPNMB-212ENST00000487890 KMT5BQ4FZB7 885 aa5.49□□□□□ -1.53
GPNMB-212ENST00000487890 TMEM164Q5U3C3 297 aa5.49□□□□□ -1.53
GPNMB-212ENST00000487890 PHLDB3Q6NSJ2 640 aa5.49□□□□□ -1.53
GPNMB-212ENST00000487890 STK32AQ8WU08 396 aa5.49□□□□□ -1.53
GPNMB-212ENST00000487890 GNEQ9Y223 722 aaKnown RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms