RNA–Protein interactions for RNA: ENST00000487558.1

CUL3-211, Transcript of cullin 3, humanhuman

TSL 2

Gene CUL3, Length 1,093 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL3-211ENST00000487558 IL27Q8NEV9 243 aa11.51□□□□□ -0.57
CUL3-211ENST00000487558 SALL2Q9Y467 1007 aaPredicted RBP11.5□□□□□ -0.57
CUL3-211ENST00000487558 PKDCCQ504Y2 493 aa11.49□□□□□ -0.57
CUL3-211ENST00000487558 TNFRSF10AO00220 468 aa11.48□□□□□ -0.57
CUL3-211ENST00000487558 FMNL1O95466 1100 aaPredicted RBP11.48□□□□□ -0.57
CUL3-211ENST00000487558 BRICD5Q6PL45 260 aa11.48□□□□□ -0.57
CUL3-211ENST00000487558 CCDC102AQ96A19 550 aa11.48□□□□□ -0.57
CUL3-211ENST00000487558 RPIAP49247 311 aa11.47□□□□□ -0.57
CUL3-211ENST00000487558 PKD2L1Q9P0L9 805 aa11.47□□□□□ -0.57
CUL3-211ENST00000487558 FCF1Q9Y324 198 aaKnown RBP11.45□□□□□ -0.58
CUL3-211ENST00000487558 AMHR2Q16671 573 aa11.44□□□□□ -0.58
CUL3-211ENST00000487558 FAM187AA6NFU0 413 aa11.43□□□□□ -0.58
CUL3-211ENST00000487558 CD46P15529 392 aa11.42□□□□□ -0.58
CUL3-211ENST00000487558 MSS51Q4VC12 460 aa11.42□□□□□ -0.58
CUL3-211ENST00000487558 RNF19BQ6ZMZ0 732 aa11.42□□□□□ -0.58
CUL3-211ENST00000487558 PRDM9Q9NQV7 894 aa11.42□□□□□ -0.58
CUL3-211ENST00000487558 CD2BP2O95400 341 aaKnown RBP11.41□□□□□ -0.58
CUL3-211ENST00000487558 FOXC1Q12948 553 aa11.41□□□□□ -0.58
CUL3-211ENST00000487558 GRIPAP1Q4V328 841 aa11.41□□□□□ -0.58
CUL3-211ENST00000487558 DDRGK1Q96HY6 314 aa11.4□□□□□ -0.58
CUL3-211ENST00000487558 POTECB2RU33 542 aa11.39□□□□□ -0.59
CUL3-211ENST00000487558 ZNF775Q96BV0 537 aaPredicted RBP11.39□□□□□ -0.59
CUL3-211ENST00000487558 FAM117AQ9C073 453 aa11.38□□□□□ -0.59
CUL3-211ENST00000487558 TOR4AQ9NXH8 423 aa11.38□□□□□ -0.59
CUL3-211ENST00000487558 Q3C1V9 767 aa11.37□□□□□ -0.59
CUL3-211ENST00000487558 PARP9Q8IXQ6 854 aa11.37□□□□□ -0.59
CUL3-211ENST00000487558 AAASQ9NRG9 546 aa11.37□□□□□ -0.59
CUL3-211ENST00000487558 KDM4AO75164 1064 aa11.36□□□□□ -0.59
CUL3-211ENST00000487558 TTLL12Q14166 644 aaPredicted RBP11.36□□□□□ -0.59
CUL3-211ENST00000487558 ST8SIA5O15466 376 aa11.35□□□□□ -0.59
CUL3-211ENST00000487558 MMP16P51512 607 aa11.35□□□□□ -0.59
CUL3-211ENST00000487558 MDM2Q00987 491 aaPredicted RBP11.35□□□□□ -0.59
CUL3-211ENST00000487558 CRIPAKQ8N1N5 446 aa11.33□□□□□ -0.6
CUL3-211ENST00000487558 AVPP01185 164 aa11.32□□□□□ -0.6
CUL3-211ENST00000487558 USP46P62068 366 aa11.32□□□□□ -0.6
CUL3-211ENST00000487558 USB1Q9BQ65 265 aaKnown RBP11.32□□□□□ -0.6
CUL3-211ENST00000487558 PLEKHG3A1L390 1219 aa11.31□□□□□ -0.6
CUL3-211ENST00000487558 ZBTB24O43167 697 aaPredicted RBP11.31□□□□□ -0.6
CUL3-211ENST00000487558 HLA-CQ95604 372 aa11.31□□□□□ -0.6
CUL3-211ENST00000487558 DXOO77932 396 aaKnown RBP11.3□□□□□ -0.6
CUL3-211ENST00000487558 CYP4X1Q8N118 509 aa11.3□□□□□ -0.6
CUL3-211ENST00000487558 HOXA2O43364 376 aa11.28□□□□□ -0.6
CUL3-211ENST00000487558 GIGYF2Q6Y7W6 1299 aaKnown RBP11.28□□□□□ -0.6
CUL3-211ENST00000487558 WNT7AO00755 349 aa11.27□□□□□ -0.61
CUL3-211ENST00000487558 CLCN1P35523 988 aa11.27□□□□□ -0.61
CUL3-211ENST00000487558 TRIM32Q13049 653 aa11.27□□□□□ -0.61
CUL3-211ENST00000487558 ARXQ96QS3 562 aa11.27□□□□□ -0.61
CUL3-211ENST00000487558 GOPCQ9HD26 462 aa11.27□□□□□ -0.61
CUL3-211ENST00000487558 GPCPD1Q9NPB8 672 aa11.27□□□□□ -0.61
CUL3-211ENST00000487558 FAM217BQ9NTX9 383 aaPredicted RBP11.27□□□□□ -0.61
CUL3-211ENST00000487558 DACH1Q9UI36 760 aa11.26□□□□□ -0.61
CUL3-211ENST00000487558 SMCPP49901 116 aaPredicted RBP11.24□□□□□ -0.61
CUL3-211ENST00000487558 TTC24A2A3L6 582 aaPredicted RBP11.23□□□□□ -0.61
CUL3-211ENST00000487558 GUCA2AQ02747 115 aa11.23□□□□□ -0.61
CUL3-211ENST00000487558 CTC1Q2NKJ3 1217 aa11.23□□□□□ -0.61
CUL3-211ENST00000487558 AXIN1O15169 862 aa11.22□□□□□ -0.61
CUL3-211ENST00000487558 MS4A1P11836 297 aa11.22□□□□□ -0.61
CUL3-211ENST00000487558 SMPD1P17405 629 aa11.22□□□□□ -0.61
CUL3-211ENST00000487558 SNIP1Q8TAD8 396 aaKnown RBP11.22□□□□□ -0.61
CUL3-211ENST00000487558 MRGPRX2Q96LB1 330 aa11.22□□□□□ -0.61
CUL3-211ENST00000487558 SUPT5HO00267 1087 aaKnown RBP11.21□□□□□ -0.61
CUL3-211ENST00000487558 REPIN1Q9BWE0 567 aaKnown RBP11.21□□□□□ -0.61
CUL3-211ENST00000487558 ZMYND15Q9H091 742 aa11.21□□□□□ -0.61
CUL3-211ENST00000487558 SYMPKQ92797 1274 aaKnown RBP11.2□□□□□ -0.62
CUL3-211ENST00000487558 PCMTD1Q96MG8 357 aaPredicted RBP11.2□□□□□ -0.62
CUL3-211ENST00000487558 JUNDP17535 347 aa11.19□□□□□ -0.62
CUL3-211ENST00000487558 SSTR3P32745 418 aaPredicted RBP11.18□□□□□ -0.62
CUL3-211ENST00000487558 LCE2AQ5TA79 106 aaPredicted RBP11.18□□□□□ -0.62
CUL3-211ENST00000487558 NUTM1Q86Y26 1132 aa11.18□□□□□ -0.62
CUL3-211ENST00000487558 CCDC24Q8N4L8 307 aa11.18□□□□□ -0.62
CUL3-211ENST00000487558 GMPR2Q9P2T1 348 aaKnown RBP11.18□□□□□ -0.62
CUL3-211ENST00000487558 SKOR1P84550 965 aa11.17□□□□□ -0.62
CUL3-211ENST00000487558 FLIIQ13045 1269 aa11.17□□□□□ -0.62
CUL3-211ENST00000487558 TREML4Q6UXN2 200 aa11.17□□□□□ -0.62
CUL3-211ENST00000487558 RSPH6AQ9H0K4 717 aa11.17□□□□□ -0.62
CUL3-211ENST00000487558 J3QL48 77 aa11.16□□□□□ -0.62
CUL3-211ENST00000487558 WNT7BP56706 349 aa11.16□□□□□ -0.62
CUL3-211ENST00000487558 RETREG3Q86VR2 466 aa11.16□□□□□ -0.62
CUL3-211ENST00000487558 PCDHGC3Q9UN70 934 aa11.16□□□□□ -0.62
CUL3-211ENST00000487558 RC3H1Q5TC82 1133 aaKnown RBP11.15□□□□□ -0.62
CUL3-211ENST00000487558 FDX1P10109 184 aa11.14□□□□□ -0.63
CUL3-211ENST00000487558 SH3D19Q5HYK7 790 aa11.14□□□□□ -0.63
CUL3-211ENST00000487558 C11orf95C9JLR9 678 aaPredicted RBP11.13□□□□□ -0.63
CUL3-211ENST00000487558 PTCRAQ6ISU1 281 aaPredicted RBP11.13□□□□□ -0.63
CUL3-211ENST00000487558 SPIRE2Q8WWL2 714 aa11.12□□□□□ -0.63
CUL3-211ENST00000487558 BEGAINQ9BUH8 593 aa11.12□□□□□ -0.63
CUL3-211ENST00000487558 SKIV2LQ15477 1246 aaKnown RBP11.11□□□□□ -0.63
CUL3-211ENST00000487558 HOMEZQ8IX15 550 aa11.11□□□□□ -0.63
CUL3-211ENST00000487558 HPS1Q92902 700 aa11.11□□□□□ -0.63
CUL3-211ENST00000487558 NUDT12Q9BQG2 462 aa11.11□□□□□ -0.63
CUL3-211ENST00000487558 ATP13A2Q9NQ11 1180 aa11.1□□□□□ -0.63
CUL3-211ENST00000487558 ATP1B4Q9UN42 357 aaPredicted RBP11.09□□□□□ -0.63
CUL3-211ENST00000487558 C6orf229H3BNL8 230 aa11.08□□□□□ -0.64
CUL3-211ENST00000487558 NDUFV2P19404 249 aa11.08□□□□□ -0.64
CUL3-211ENST00000487558 SIAH2O43255 324 aa11.07□□□□□ -0.64
CUL3-211ENST00000487558 MOXD2PA6NHM9 499 aa11.06□□□□□ -0.64
CUL3-211ENST00000487558 DIXDC1Q155Q3 683 aa11.06□□□□□ -0.64
CUL3-211ENST00000487558 CCNYL3P0C7X3 344 aa11.05□□□□□ -0.64
CUL3-211ENST00000487558 SNRPBP14678 240 aaKnown RBP11.05□□□□□ -0.64
CUL3-211ENST00000487558 ALDH1A1P00352 501 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms