RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 ABCC11Q96J66 1382 aa36.25■■■■□ 3.39
LIME1-206ENST00000487026 PLEKHH1Q9ULM0 1364 aa36.24■■■■□ 3.39
LIME1-206ENST00000487026 TECPR2O15040 1411 aa36.24■■■■□ 3.39
LIME1-206ENST00000487026 ESCO1Q5FWF5 840 aa36.23■■■■□ 3.39
LIME1-206ENST00000487026 NUTM2FA1L443 756 aa36.22■■■■□ 3.39
LIME1-206ENST00000487026 C14orf93Q9H972 538 aaKnown RBP36.22■■■■□ 3.39
LIME1-206ENST00000487026 SOS2Q07890 1332 aaPredicted RBP36.22■■■■□ 3.39
LIME1-206ENST00000487026 CFAP70Q5T0N1 1121 aa36.21■■■■□ 3.39
LIME1-206ENST00000487026 YTHDC2Q9H6S0 1430 aaKnown RBP36.2■■■■□ 3.39
LIME1-206ENST00000487026 AFF2P51816 1311 aa36.2■■■■□ 3.39
LIME1-206ENST00000487026 CDC42BPGQ6DT37 1551 aa36.19■■■■□ 3.38
LIME1-206ENST00000487026 C8orf37Q96NL8 207 aa36.18■■■■□ 3.38
LIME1-206ENST00000487026 LAMC1P11047 1609 aa36.18■■■■□ 3.38
LIME1-206ENST00000487026 ADAMTS2O95450 1211 aa36.15■■■■□ 3.38
LIME1-206ENST00000487026 NRXN1Q9ULB1 1477 aa36.15■■■■□ 3.38
LIME1-206ENST00000487026 RXRBP28702 533 aa36.13■■■■□ 3.37
LIME1-206ENST00000487026 KNDC1Q76NI1 1749 aa36.13■■■■□ 3.37
LIME1-206ENST00000487026 MYOM2P54296 1465 aa36.12■■■■□ 3.37
LIME1-206ENST00000487026 FOXO3O43524 673 aa36.12■■■■□ 3.37
LIME1-206ENST00000487026 XPCQ01831 940 aaPredicted RBP36.12■■■■□ 3.37
LIME1-206ENST00000487026 DHX57Q6P158 1386 aaKnown RBP36.11■■■■□ 3.37
LIME1-206ENST00000487026 NPHP3Q7Z494 1330 aa36.09■■■■□ 3.37
LIME1-206ENST00000487026 SIRT1Q96EB6 747 aa36.09■■■■□ 3.37
LIME1-206ENST00000487026 KDM2AQ9Y2K7 1162 aa36.08■■■■□ 3.37
LIME1-206ENST00000487026 HRCP23327 699 aa36.07■■■■□ 3.36
LIME1-206ENST00000487026 NGLY1Q96IV0 654 aa36.07■■■■□ 3.36
LIME1-206ENST00000487026 SAFB2Q14151 953 aaKnown RBP eCLIP36.06■■■■□ 3.36
LIME1-206ENST00000487026 QTRT2Q9H974 415 aaKnown RBP36.05■■■■□ 3.36
LIME1-206ENST00000487026 PRAM1Q96QH2 718 aa36.04■■■■□ 3.36
LIME1-206ENST00000487026 DCAF11Q8TEB1 546 aa36.03■■■■□ 3.36
LIME1-206ENST00000487026 PXDNQ92626 1479 aa36.03■■■■□ 3.36
LIME1-206ENST00000487026 FMN2Q9NZ56 1722 aa36■■■■□ 3.35
LIME1-206ENST00000487026 POGKQ9P215 609 aa35.98■■■■□ 3.35
LIME1-206ENST00000487026 TRAK1Q9UPV9 953 aa35.95■■■■□ 3.35
LIME1-206ENST00000487026 COL22A1Q8NFW1 1626 aaPredicted RBP35.94■■■■□ 3.34
LIME1-206ENST00000487026 RBM6P78332 1123 aaKnown RBP35.94■■■■□ 3.34
LIME1-206ENST00000487026 USP21Q9UK80 565 aa35.93■■■■□ 3.34
LIME1-206ENST00000487026 KRT28Q7Z3Y7 464 aa35.92■■■■□ 3.34
LIME1-206ENST00000487026 ADGRB1O14514 1584 aa35.91■■■■□ 3.34
LIME1-206ENST00000487026 UPF1Q92900 1129 aaKnown RBP eCLIP35.91■■■■□ 3.34
LIME1-206ENST00000487026 PHF8Q9UPP1 1060 aa35.91■■■■□ 3.34
LIME1-206ENST00000487026 CDK12Q9NYV4 1490 aaPredicted RBP35.91■■■■□ 3.34
LIME1-206ENST00000487026 RGPD8O14715 1765 aaPredicted RBP35.89■■■■□ 3.34
LIME1-206ENST00000487026 FNBP4Q8N3X1 1017 aaPredicted RBP35.89■■■■□ 3.34
LIME1-206ENST00000487026 DLC1Q96QB1 1528 aa35.88■■■■□ 3.33
LIME1-206ENST00000487026 HIRIP3Q9BW71 556 aaPredicted RBP35.88■■■■□ 3.33
LIME1-206ENST00000487026 SPATA31A3Q5VYP0 1347 aa35.87■■■■□ 3.33
LIME1-206ENST00000487026 KIF1AQ12756 1690 aa35.86■■■■□ 3.33
LIME1-206ENST00000487026 RGS12O14924 1447 aa35.85■■■■□ 3.33
LIME1-206ENST00000487026 STAC3Q96MF2 364 aa35.84■■■■□ 3.33
LIME1-206ENST00000487026 MINK1Q8N4C8 1332 aaPredicted RBP35.83■■■■□ 3.33
LIME1-206ENST00000487026 TRPC5Q9UL62 973 aaPredicted RBP35.83■■■■□ 3.33
LIME1-206ENST00000487026 PMFBP1Q8TBY8 1022 aa35.82■■■■□ 3.32
LIME1-206ENST00000487026 PLEKHG5O94827 1062 aa35.8■■■■□ 3.32
LIME1-206ENST00000487026 PSME1Q06323 249 aa35.8■■■■□ 3.32
LIME1-206ENST00000487026 USP32Q8NFA0 1604 aa35.75■■■■□ 3.31
LIME1-206ENST00000487026 ATRNO75882 1429 aa35.75■■■■□ 3.31
LIME1-206ENST00000487026 BCL9LQ86UU0 1499 aa35.75■■■■□ 3.31
LIME1-206ENST00000487026 LMOD2Q6P5Q4 547 aa35.75■■■■□ 3.31
LIME1-206ENST00000487026 CABLES1Q8TDN4 633 aa35.75■■■■□ 3.31
LIME1-206ENST00000487026 MARF1Q9Y4F3 1742 aaKnown RBP35.74■■■■□ 3.31
LIME1-206ENST00000487026 ANKARQ7Z5J8 1434 aa35.74■■■■□ 3.31
LIME1-206ENST00000487026 ADGRB2O60241 1585 aa35.73■■■■□ 3.31
LIME1-206ENST00000487026 TNS3Q68CZ2 1445 aa35.73■■■■□ 3.31
LIME1-206ENST00000487026 WASLO00401 505 aaPredicted RBP35.72■■■■□ 3.31
LIME1-206ENST00000487026 PRR36Q9H6K5 1346 aa35.72■■■■□ 3.31
LIME1-206ENST00000487026 HAP1P54257 671 aaPredicted RBP35.7■■■■□ 3.31
LIME1-206ENST00000487026 SBNO1A3KN83 1393 aa35.69■■■■□ 3.3
LIME1-206ENST00000487026 UNC5CLQ8IV45 518 aa35.64■■■■□ 3.3
LIME1-206ENST00000487026 GJD4Q96KN9 370 aaPredicted RBP35.64■■■■□ 3.3
LIME1-206ENST00000487026 EIF3AQ14152 1382 aaKnown RBP35.63■■■■□ 3.29
LIME1-206ENST00000487026 TULP4Q9NRJ4 1543 aa35.62■■■■□ 3.29
LIME1-206ENST00000487026 ARHGEF28Q8N1W1 1705 aaKnown RBP35.62■■■■□ 3.29
LIME1-206ENST00000487026 ARHGEF10O15013 1369 aa35.62■■■■□ 3.29
LIME1-206ENST00000487026 NBPF1Q3BBV0 1214 aa35.61■■■■□ 3.29
LIME1-206ENST00000487026 SLIT2O94813 1529 aa35.61■■■■□ 3.29
LIME1-206ENST00000487026 NGDNQ8NEJ9 315 aaKnown RBP35.59■■■■□ 3.29
LIME1-206ENST00000487026 GPRASP1Q5JY77 1395 aa35.59■■■■□ 3.29
LIME1-206ENST00000487026 NUDT16Q96DE0 195 aaKnown RBP35.57■■■■□ 3.28
LIME1-206ENST00000487026 ATAD2Q6PL18 1390 aa35.56■■■■□ 3.28
LIME1-206ENST00000487026 CDK19Q9BWU1 502 aa35.55■■■■□ 3.28
LIME1-206ENST00000487026 TRPM3Q9HCF6 1732 aaPredicted RBP35.54■■■■□ 3.28
LIME1-206ENST00000487026 FAM83GA6ND36 823 aa35.53■■■■□ 3.28
LIME1-206ENST00000487026 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.53■■■■□ 3.28
LIME1-206ENST00000487026 RALGAPBQ86X10 1494 aa35.53■■■■□ 3.28
LIME1-206ENST00000487026 PAK3O75914 559 aaPredicted RBP35.52■■■■□ 3.28
LIME1-206ENST00000487026 ABCA3Q99758 1704 aa35.51■■■■□ 3.27
LIME1-206ENST00000487026 KIAA1210Q9ULL0 1709 aa35.51■■■■□ 3.27
LIME1-206ENST00000487026 SIN3AQ96ST3 1273 aa35.5■■■■□ 3.27
LIME1-206ENST00000487026 ATP7BP35670 1465 aa35.49■■■■□ 3.27
LIME1-206ENST00000487026 GLI3P10071 1580 aa35.49■■■■□ 3.27
LIME1-206ENST00000487026 L3MBTL2Q969R5 705 aa35.48■■■■□ 3.27
LIME1-206ENST00000487026 VPS72Q15906 364 aa35.47■■■■□ 3.27
LIME1-206ENST00000487026 ALS2Q96Q42 1657 aa35.46■■■■□ 3.27
LIME1-206ENST00000487026 CCDC9Q9Y3X0 531 aaKnown RBP35.46■■■■□ 3.27
LIME1-206ENST00000487026 PLCH1Q4KWH8 1693 aa35.46■■■■□ 3.27
LIME1-206ENST00000487026 NEUROD1Q13562 356 aa35.43■■■■□ 3.26
LIME1-206ENST00000487026 ITSN1Q15811 1721 aa35.41■■■■□ 3.26
LIME1-206ENST00000487026 CCDC61Q9Y6R9 512 aa35.41■■■■□ 3.26
LIME1-206ENST00000487026 BTG4Q9NY30 223 aa35.4■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms