RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 GBP4Q96PP9 640 aa13.69□□□□□ -0.22
HDAC6-228ENST00000486227 GORABQ5T7V8 394 aa13.68□□□□□ -0.22
HDAC6-228ENST00000486227 KIAA0556O60303 1618 aa13.68□□□□□ -0.22
HDAC6-228ENST00000486227 CDK11BP21127 795 aaKnown RBP13.68□□□□□ -0.22
HDAC6-228ENST00000486227 API5Q9BZZ5 524 aaKnown RBP13.68□□□□□ -0.22
HDAC6-228ENST00000486227 GPRASP1Q5JY77 1395 aa13.68□□□□□ -0.22
HDAC6-228ENST00000486227 TTC5Q8N0Z6 440 aa13.68□□□□□ -0.22
HDAC6-228ENST00000486227 DHX29Q7Z478 1369 aaKnown RBP13.67□□□□□ -0.22
HDAC6-228ENST00000486227 PLCH2O75038 1416 aa13.67□□□□□ -0.22
HDAC6-228ENST00000486227 G3V3G9 751 aa13.67□□□□□ -0.22
HDAC6-228ENST00000486227 DCAF8Q5TAQ9 597 aa13.67□□□□□ -0.22
HDAC6-228ENST00000486227 TSPYL4Q9UJ04 414 aa13.67□□□□□ -0.22
HDAC6-228ENST00000486227 WDR62O43379 1518 aa13.67□□□□□ -0.22
HDAC6-228ENST00000486227 KIF16BQ96L93 1317 aa13.67□□□□□ -0.22
HDAC6-228ENST00000486227 ESCO1Q5FWF5 840 aa13.66□□□□□ -0.22
HDAC6-228ENST00000486227 RAPGEF4Q8WZA2 1011 aa13.66□□□□□ -0.22
HDAC6-228ENST00000486227 EXOSC9Q06265 439 aaKnown RBP13.66□□□□□ -0.22
HDAC6-228ENST00000486227 ABTB2Q8N961 1025 aa13.66□□□□□ -0.22
HDAC6-228ENST00000486227 SYTL4Q96C24 671 aaPredicted RBP13.66□□□□□ -0.22
HDAC6-228ENST00000486227 RTEL1-TNFRSF6BF6WH68 1400 aa13.66□□□□□ -0.22
HDAC6-228ENST00000486227 ZRSR1Q15695 479 aaKnown RBP13.66□□□□□ -0.22
HDAC6-228ENST00000486227 WAPLQ7Z5K2 1190 aa13.66□□□□□ -0.22
HDAC6-228ENST00000486227 TSR2Q969E8 191 aaKnown RBP13.65□□□□□ -0.22
HDAC6-228ENST00000486227 ISY1Q9ULR0 285 aaKnown RBP13.65□□□□□ -0.22
HDAC6-228ENST00000486227 BCAR3O75815 825 aa13.65□□□□□ -0.22
HDAC6-228ENST00000486227 NSD3Q9BZ95 1437 aa13.65□□□□□ -0.22
HDAC6-228ENST00000486227 FKBP5Q13451 457 aaPredicted RBP13.65□□□□□ -0.22
HDAC6-228ENST00000486227 NLRP2Q9NX02 1062 aa13.65□□□□□ -0.22
HDAC6-228ENST00000486227 VSIG10Q8N0Z9 540 aa13.64□□□□□ -0.23
HDAC6-228ENST00000486227 ATAD2Q6PL18 1390 aa13.64□□□□□ -0.23
HDAC6-228ENST00000486227 TCOF1Q13428 1488 aaKnown RBP13.64□□□□□ -0.23
HDAC6-228ENST00000486227 ZNF692Q9BU19 519 aaPredicted RBP13.64□□□□□ -0.23
HDAC6-228ENST00000486227 BRPF3Q9ULD4 1205 aa13.64□□□□□ -0.23
HDAC6-228ENST00000486227 EIF4G3O43432 1585 aaKnown RBP13.64□□□□□ -0.23
HDAC6-228ENST00000486227 FOXD4L1Q9NU39 408 aa13.63□□□□□ -0.23
HDAC6-228ENST00000486227 DENND4BO75064 1496 aaPredicted RBP13.63□□□□□ -0.23
HDAC6-228ENST00000486227 DISP1Q96F81 1524 aa13.63□□□□□ -0.23
HDAC6-228ENST00000486227 PLCB2Q00722 1185 aa13.63□□□□□ -0.23
HDAC6-228ENST00000486227 SMG6Q86US8 1419 aaKnown RBP13.63□□□□□ -0.23
HDAC6-228ENST00000486227 GPATCH3Q96I76 525 aa13.63□□□□□ -0.23
HDAC6-228ENST00000486227 ASXL2Q76L83 1435 aa13.62□□□□□ -0.23
HDAC6-228ENST00000486227 SULT6B1Q6IMI4 303 aa13.62□□□□□ -0.23
HDAC6-228ENST00000486227 SYCP2Q9BX26 1530 aa13.62□□□□□ -0.23
HDAC6-228ENST00000486227 LNPKQ9C0E8 428 aa13.62□□□□□ -0.23
HDAC6-228ENST00000486227 CCDC61Q9Y6R9 512 aa13.62□□□□□ -0.23
HDAC6-228ENST00000486227 CFAP43Q8NDM7 1665 aa13.61□□□□□ -0.23
HDAC6-228ENST00000486227 TRAPPC8Q9Y2L5 1435 aa13.61□□□□□ -0.23
HDAC6-228ENST00000486227 RRS1Q15050 365 aaKnown RBP13.61□□□□□ -0.23
HDAC6-228ENST00000486227 RILPL2Q969X0 211 aa13.61□□□□□ -0.23
HDAC6-228ENST00000486227 NOS1P29475 1434 aa13.61□□□□□ -0.23
HDAC6-228ENST00000486227 NUP160Q12769 1436 aa13.61□□□□□ -0.23
HDAC6-228ENST00000486227 GOLGA6L4A6NEF3 574 aa13.61□□□□□ -0.23
HDAC6-228ENST00000486227 NOL8Q76FK4 1167 aaKnown RBP13.61□□□□□ -0.23
HDAC6-228ENST00000486227 NUDT16Q96DE0 195 aaKnown RBP13.61□□□□□ -0.23
HDAC6-228ENST00000486227 BACH2Q9BYV9 841 aa13.61□□□□□ -0.23
HDAC6-228ENST00000486227 PHF23Q9BUL5 403 aaPredicted RBP13.61□□□□□ -0.23
HDAC6-228ENST00000486227 DDX11L8A8MPP1 907 aa13.6□□□□□ -0.23
HDAC6-228ENST00000486227 C9orf78Q9NZ63 289 aaPredicted RBP13.6□□□□□ -0.23
HDAC6-228ENST00000486227 DISP3Q9P2K9 1392 aa13.6□□□□□ -0.23
HDAC6-228ENST00000486227 FRAT2O75474 233 aaPredicted RBP13.59□□□□□ -0.23
HDAC6-228ENST00000486227 ABCA5Q8WWZ7 1642 aa13.59□□□□□ -0.23
HDAC6-228ENST00000486227 KDM5BQ9UGL1 1544 aa13.59□□□□□ -0.23
HDAC6-228ENST00000486227 CEBPAP49715 358 aaPredicted RBP13.59□□□□□ -0.23
HDAC6-228ENST00000486227 FAM43AQ8N2R8 423 aa13.59□□□□□ -0.23
HDAC6-228ENST00000486227 C14orf93Q9H972 538 aaKnown RBP13.59□□□□□ -0.23
HDAC6-228ENST00000486227 WDR63Q8IWG1 891 aa13.58□□□□□ -0.23
HDAC6-228ENST00000486227 NEXNQ0ZGT2 675 aa13.58□□□□□ -0.24
HDAC6-228ENST00000486227 PDE3AQ14432 1141 aa13.58□□□□□ -0.24
HDAC6-228ENST00000486227 TWISTNBQ3B726 338 aaPredicted RBP13.58□□□□□ -0.24
HDAC6-228ENST00000486227 SCAF11Q99590 1463 aaKnown RBP13.58□□□□□ -0.24
HDAC6-228ENST00000486227 TULP1O00294 542 aaPredicted RBP13.57□□□□□ -0.24
HDAC6-228ENST00000486227 WWC1Q8IX03 1113 aa13.57□□□□□ -0.24
HDAC6-228ENST00000486227 ITSN2Q9NZM3 1697 aa13.57□□□□□ -0.24
HDAC6-228ENST00000486227 AAMPQ13685 434 aa13.57□□□□□ -0.24
HDAC6-228ENST00000486227 GAS2L2Q8NHY3 880 aa13.57□□□□□ -0.24
HDAC6-228ENST00000486227 FAM135AQ9P2D6 1515 aa13.57□□□□□ -0.24
HDAC6-228ENST00000486227 SLFN5Q08AF3 891 aa13.56□□□□□ -0.24
HDAC6-228ENST00000486227 NOB1Q9ULX3 412 aaKnown RBP13.55□□□□□ -0.24
HDAC6-228ENST00000486227 DUOX2Q9NRD8 1548 aa13.55□□□□□ -0.24
HDAC6-228ENST00000486227 WDR7Q9Y4E6 1490 aa13.55□□□□□ -0.24
HDAC6-228ENST00000486227 ST18O60284 1047 aa13.55□□□□□ -0.24
HDAC6-228ENST00000486227 TMPOP42166 694 aaKnown RBP13.54□□□□□ -0.24
HDAC6-228ENST00000486227 FCHSD2O94868 740 aa13.54□□□□□ -0.24
HDAC6-228ENST00000486227 DDX58O95786 925 aaKnown RBP13.54□□□□□ -0.24
HDAC6-228ENST00000486227 CHAF1AQ13111 956 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-228ENST00000486227 PIP4K2BP78356 416 aa13.53□□□□□ -0.24
HDAC6-228ENST00000486227 NUTM2BA6NNL0 878 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-228ENST00000486227 NUTM2EB1AL46 878 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-228ENST00000486227 AIMP1Q12904 312 aaKnown RBP13.53□□□□□ -0.24
HDAC6-228ENST00000486227 NME9Q86XW9 330 aa13.53□□□□□ -0.24
HDAC6-228ENST00000486227 NUTM2AQ8IVF1 878 aaPredicted RBP13.53□□□□□ -0.24
HDAC6-228ENST00000486227 STRN4Q9NRL3 753 aa13.52□□□□□ -0.24
HDAC6-228ENST00000486227 A2MP01023 1474 aa13.52□□□□□ -0.24
HDAC6-228ENST00000486227 C1orf115Q9H7X2 142 aa13.52□□□□□ -0.24
HDAC6-228ENST00000486227 PBRM1Q86U86 1689 aa13.52□□□□□ -0.25
HDAC6-228ENST00000486227 RALGAPBQ86X10 1494 aa13.52□□□□□ -0.25
HDAC6-228ENST00000486227 SKOR2Q2VWA4 1001 aaPredicted RBP13.52□□□□□ -0.25
HDAC6-228ENST00000486227 PDZRN3Q9UPQ7 1066 aa13.52□□□□□ -0.25
HDAC6-228ENST00000486227 THUMPD2Q9BTF0 503 aaKnown RBP13.52□□□□□ -0.25
HDAC6-228ENST00000486227 PRAG1Q86YV5 1406 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms