RNA–Protein interactions for RNA: ENST00000486066.5

CHRD-216, Transcript of chordin, humanhuman

TSL 4

Gene CHRD, Length 546 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRD-216ENST00000486066 ATAD2Q6PL18 1390 aa29.44■■■□□ 2.3
CHRD-216ENST00000486066 PXDNQ92626 1479 aa29.42■■■□□ 2.3
CHRD-216ENST00000486066 USP21Q9UK80 565 aa29.42■■■□□ 2.3
CHRD-216ENST00000486066 RRBP1Q9P2E9 1410 aaKnown RBP29.42■■■□□ 2.3
CHRD-216ENST00000486066 VGFO15240 615 aaPredicted RBP29.41■■■□□ 2.3
CHRD-216ENST00000486066 TRPC5Q9UL62 973 aaPredicted RBP29.41■■■□□ 2.3
CHRD-216ENST00000486066 BCL9LQ86UU0 1499 aa29.4■■■□□ 2.3
CHRD-216ENST00000486066 RPGRIP1LQ68CZ1 1315 aa29.39■■■□□ 2.3
CHRD-216ENST00000486066 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.35■■■□□ 2.29
CHRD-216ENST00000486066 TECPR2O15040 1411 aa29.33■■■□□ 2.29
CHRD-216ENST00000486066 NPHP3Q7Z494 1330 aa29.32■■■□□ 2.28
CHRD-216ENST00000486066 PPARGC1BQ86YN6 1023 aaKnown RBP29.3■■■□□ 2.28
CHRD-216ENST00000486066 IFT172Q9UG01 1749 aa29.29■■■□□ 2.28
CHRD-216ENST00000486066 KNDC1Q76NI1 1749 aa29.28■■■□□ 2.28
CHRD-216ENST00000486066 GLI3P10071 1580 aa29.26■■■□□ 2.27
CHRD-216ENST00000486066 SLIT2O94813 1529 aa29.25■■■□□ 2.27
CHRD-216ENST00000486066 ESCO1Q5FWF5 840 aa29.24■■■□□ 2.27
CHRD-216ENST00000486066 FMN2Q9NZ56 1722 aa29.24■■■□□ 2.27
CHRD-216ENST00000486066 CCDC125Q86Z20 511 aa29.23■■■□□ 2.27
CHRD-216ENST00000486066 SPATA31E1Q6ZUB1 1445 aa29.22■■■□□ 2.27
CHRD-216ENST00000486066 GJD4Q96KN9 370 aaPredicted RBP29.22■■■□□ 2.27
CHRD-216ENST00000486066 ADGRF5Q8IZF2 1346 aa29.21■■■□□ 2.27
CHRD-216ENST00000486066 FOXO3O43524 673 aa29.21■■■□□ 2.27
CHRD-216ENST00000486066 LRPPRCP42704 1394 aaKnown RBP29.2■■■□□ 2.26
CHRD-216ENST00000486066 KIF1AQ12756 1690 aa29.2■■■□□ 2.26
CHRD-216ENST00000486066 ABCC11Q96J66 1382 aa29.19■■■□□ 2.26
CHRD-216ENST00000486066 ZRANB1Q9UGI0 708 aa29.19■■■□□ 2.26
CHRD-216ENST00000486066 RALGAPBQ86X10 1494 aa29.18■■■□□ 2.26
CHRD-216ENST00000486066 BRWD3Q6RI45 1802 aa29.18■■■□□ 2.26
CHRD-216ENST00000486066 XPCQ01831 940 aaPredicted RBP29.18■■■□□ 2.26
CHRD-216ENST00000486066 SLC4A1APQ9BWU0 796 aaKnown RBP29.18■■■□□ 2.26
CHRD-216ENST00000486066 USP32Q8NFA0 1604 aa29.18■■■□□ 2.26
CHRD-216ENST00000486066 PLEKHH1Q9ULM0 1364 aa29.17■■■□□ 2.26
CHRD-216ENST00000486066 SPATA31A3Q5VYP0 1347 aa29.16■■■□□ 2.26
CHRD-216ENST00000486066 PIK3C2GO75747 1445 aa29.15■■■□□ 2.26
CHRD-216ENST00000486066 WAPLQ7Z5K2 1190 aa29.15■■■□□ 2.26
CHRD-216ENST00000486066 FOXD1Q16676 465 aa29.13■■■□□ 2.25
CHRD-216ENST00000486066 UNC5CLQ8IV45 518 aa29.13■■■□□ 2.25
CHRD-216ENST00000486066 ANKRD30BQ9BXX2 1392 aa29.12■■■□□ 2.25
CHRD-216ENST00000486066 CCDC144AA2RUR9 1427 aa29.11■■■□□ 2.25
CHRD-216ENST00000486066 BLMP54132 1417 aaPredicted RBP29.11■■■□□ 2.25
CHRD-216ENST00000486066 RGPD8O14715 1765 aaPredicted RBP29.11■■■□□ 2.25
CHRD-216ENST00000486066 ABCA3Q99758 1704 aa29.1■■■□□ 2.25
CHRD-216ENST00000486066 NWD2Q9ULI1 1742 aa29.09■■■□□ 2.25
CHRD-216ENST00000486066 YTHDC2Q9H6S0 1430 aaKnown RBP29.08■■■□□ 2.25
CHRD-216ENST00000486066 PLCH1Q4KWH8 1693 aa29.08■■■□□ 2.25
CHRD-216ENST00000486066 NUTM2FA1L443 756 aa29.07■■■□□ 2.24
CHRD-216ENST00000486066 STK26Q9P289 416 aa29.07■■■□□ 2.24
CHRD-216ENST00000486066 TMEM132EQ6IEE7 984 aa29.05■■■□□ 2.24
CHRD-216ENST00000486066 SIRT1Q96EB6 747 aa29.05■■■□□ 2.24
CHRD-216ENST00000486066 TNS3Q68CZ2 1445 aa29.04■■■□□ 2.24
CHRD-216ENST00000486066 NRXN1Q9ULB1 1477 aa29.04■■■□□ 2.24
CHRD-216ENST00000486066 ONECUT3O60422 494 aaPredicted RBP29.03■■■□□ 2.24
CHRD-216ENST00000486066 KRT28Q7Z3Y7 464 aa29.01■■■□□ 2.23
CHRD-216ENST00000486066 LRP5O75197 1615 aa29.01■■■□□ 2.23
CHRD-216ENST00000486066 VPS72Q15906 364 aa29■■■□□ 2.23
CHRD-216ENST00000486066 RGL3Q3MIN7 710 aa28.99■■■□□ 2.23
CHRD-216ENST00000486066 SBNO1A3KN83 1393 aa28.99■■■□□ 2.23
CHRD-216ENST00000486066 NRAPQ86VF7 1730 aa28.97■■■□□ 2.23
CHRD-216ENST00000486066 DEFB132Q7Z7B7 95 aa28.97■■■□□ 2.23
CHRD-216ENST00000486066 SEPT12Q8IYM1 358 aa28.97■■■□□ 2.23
CHRD-216ENST00000486066 C14orf93Q9H972 538 aaKnown RBP28.96■■■□□ 2.23
CHRD-216ENST00000486066 PHF8Q9UPP1 1060 aa28.95■■■□□ 2.22
CHRD-216ENST00000486066 TRPM3Q9HCF6 1732 aaPredicted RBP28.94■■■□□ 2.22
CHRD-216ENST00000486066 MPHOSPH9Q99550 1183 aa28.93■■■□□ 2.22
CHRD-216ENST00000486066 ADGRB2O60241 1585 aa28.92■■■□□ 2.22
CHRD-216ENST00000486066 CABLES1Q8TDN4 633 aa28.92■■■□□ 2.22
CHRD-216ENST00000486066 DLC1Q96QB1 1528 aa28.91■■■□□ 2.22
CHRD-216ENST00000486066 ALS2Q96Q42 1657 aa28.89■■■□□ 2.22
CHRD-216ENST00000486066 ARHGEF10O15013 1369 aa28.89■■■□□ 2.22
CHRD-216ENST00000486066 ANKARQ7Z5J8 1434 aa28.88■■■□□ 2.21
CHRD-216ENST00000486066 PSME1Q06323 249 aa28.88■■■□□ 2.21
CHRD-216ENST00000486066 CRYBG1Q9Y4K1 1723 aa28.87■■■□□ 2.21
CHRD-216ENST00000486066 FAM83GA6ND36 823 aa28.86■■■□□ 2.21
CHRD-216ENST00000486066 KRT27Q7Z3Y8 459 aa28.86■■■□□ 2.21
CHRD-216ENST00000486066 ADGRB1O14514 1584 aa28.85■■■□□ 2.21
CHRD-216ENST00000486066 DHX57Q6P158 1386 aaKnown RBP28.85■■■□□ 2.21
CHRD-216ENST00000486066 CFAP70Q5T0N1 1121 aa28.84■■■□□ 2.21
CHRD-216ENST00000486066 COL14A1Q05707 1796 aaKnown RBP28.83■■■□□ 2.21
CHRD-216ENST00000486066 PRAM1Q96QH2 718 aa28.82■■■□□ 2.2
CHRD-216ENST00000486066 THSD7AQ9UPZ6 1657 aa28.8■■■□□ 2.2
CHRD-216ENST00000486066 SF3B2Q13435 895 aaKnown RBP28.8■■■□□ 2.2
CHRD-216ENST00000486066 RGPD1P0DJD0 1748 aa28.8■■■□□ 2.2
CHRD-216ENST00000486066 HAP1P54257 671 aaPredicted RBP28.79■■■□□ 2.2
CHRD-216ENST00000486066 TNS1Q9HBL0 1735 aaKnown RBP28.77■■■□□ 2.2
CHRD-216ENST00000486066 DISP2A7MBM2 1401 aa28.76■■■□□ 2.19
CHRD-216ENST00000486066 PMFBP1Q8TBY8 1022 aa28.75■■■□□ 2.19
CHRD-216ENST00000486066 CCDC9Q9Y3X0 531 aaKnown RBP28.75■■■□□ 2.19
CHRD-216ENST00000486066 TULP4Q9NRJ4 1543 aa28.74■■■□□ 2.19
CHRD-216ENST00000486066 PRR36Q9H6K5 1346 aa28.74■■■□□ 2.19
CHRD-216ENST00000486066 SAFB2Q14151 953 aaKnown RBP eCLIP28.74■■■□□ 2.19
CHRD-216ENST00000486066 HRCP23327 699 aa28.73■■■□□ 2.19
CHRD-216ENST00000486066 FAM98CQ17RN3 349 aaKnown RBP28.73■■■□□ 2.19
CHRD-216ENST00000486066 LMOD2Q6P5Q4 547 aa28.72■■■□□ 2.19
CHRD-216ENST00000486066 BTG4Q9NY30 223 aa28.72■■■□□ 2.19
CHRD-216ENST00000486066 BAG6P46379 1132 aa28.71■■■□□ 2.19
CHRD-216ENST00000486066 SPATA31A5Q5VU36 1347 aa28.7■■■□□ 2.19
CHRD-216ENST00000486066 SPATA31A7Q8IWB4 1347 aa28.7■■■□□ 2.19
CHRD-216ENST00000486066 ACIN1Q9UKV3 1341 aaKnown RBP28.7■■■□□ 2.19
CHRD-216ENST00000486066 PLEKHG5O94827 1062 aa28.7■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms