RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PLA2G2CQ5R387 149 aa9.48□□□□□ -0.89
VPS41-213ENST00000485955 ANKLE1Q8NAG6 615 aa9.48□□□□□ -0.89
VPS41-213ENST00000485955 KDM4CQ9H3R0 1056 aa9.48□□□□□ -0.89
VPS41-213ENST00000485955 MSS51Q4VC12 460 aa9.47□□□□□ -0.89
VPS41-213ENST00000485955 PCDHB15Q9Y5E8 787 aa9.47□□□□□ -0.89
VPS41-213ENST00000485955 MYSM1Q5VVJ2 828 aa9.45□□□□□ -0.9
VPS41-213ENST00000485955 RSBN1LQ6PCB5 846 aaPredicted RBP9.45□□□□□ -0.9
VPS41-213ENST00000485955 LIAT1Q6ZQX7 453 aa9.45□□□□□ -0.9
VPS41-213ENST00000485955 FAM117AQ9C073 453 aa9.45□□□□□ -0.9
VPS41-213ENST00000485955 V9GY48 417 aaPredicted RBP9.45□□□□□ -0.9
VPS41-213ENST00000485955 C6orf229H3BNL8 230 aa9.44□□□□□ -0.9
VPS41-213ENST00000485955 PRKCSHP14314 528 aaPredicted RBP9.44□□□□□ -0.9
VPS41-213ENST00000485955 SLC19A1P41440 591 aa9.44□□□□□ -0.9
VPS41-213ENST00000485955 DIXDC1Q155Q3 683 aa9.44□□□□□ -0.9
VPS41-213ENST00000485955 RIC3Q7Z5B4 369 aa9.44□□□□□ -0.9
VPS41-213ENST00000485955 FCF1Q9Y324 198 aaKnown RBP9.44□□□□□ -0.9
VPS41-213ENST00000485955 SPTLC1O15269 473 aa9.43□□□□□ -0.9
VPS41-213ENST00000485955 MMP16P51512 607 aa9.43□□□□□ -0.9
VPS41-213ENST00000485955 GJA5P36382 358 aa9.42□□□□□ -0.9
VPS41-213ENST00000485955 RETREG3Q86VR2 466 aa9.42□□□□□ -0.9
VPS41-213ENST00000485955 LIMD1Q9UGP4 676 aa9.42□□□□□ -0.9
VPS41-213ENST00000485955 DXOO77932 396 aaKnown RBP9.41□□□□□ -0.9
VPS41-213ENST00000485955 PLEKHG3A1L390 1219 aa9.4□□□□□ -0.9
VPS41-213ENST00000485955 CSPP1Q1MSJ5 1256 aa9.4□□□□□ -0.9
VPS41-213ENST00000485955 SPRYD7Q5W111 196 aa9.4□□□□□ -0.9
VPS41-213ENST00000485955 POLR3EQ9NVU0 708 aa9.4□□□□□ -0.9
VPS41-213ENST00000485955 HRCP23327 699 aa9.39□□□□□ -0.91
VPS41-213ENST00000485955 MTMR2Q13614 643 aa9.39□□□□□ -0.91
VPS41-213ENST00000485955 CABLES1Q8TDN4 633 aa9.39□□□□□ -0.91
VPS41-213ENST00000485955 BRPF1P55201 1214 aaPredicted RBP9.38□□□□□ -0.91
VPS41-213ENST00000485955 NEUROD2Q15784 382 aa9.38□□□□□ -0.91
VPS41-213ENST00000485955 PRR7Q8TB68 274 aa9.38□□□□□ -0.91
VPS41-213ENST00000485955 IRX2Q9BZI1 471 aaPredicted RBP9.38□□□□□ -0.91
VPS41-213ENST00000485955 JUNDP17535 347 aa9.37□□□□□ -0.91
VPS41-213ENST00000485955 QPCTQ16769 361 aa9.37□□□□□ -0.91
VPS41-213ENST00000485955 RSPH6AQ9H0K4 717 aa9.37□□□□□ -0.91
VPS41-213ENST00000485955 DDRGK1Q96HY6 314 aa9.36□□□□□ -0.91
VPS41-213ENST00000485955 SPDYE5A6NIY4 337 aa9.35□□□□□ -0.91
VPS41-213ENST00000485955 CFAP99D6REC4 459 aa9.35□□□□□ -0.91
VPS41-213ENST00000485955 PRPF38BQ5VTL8 546 aaKnown RBP9.35□□□□□ -0.91
VPS41-213ENST00000485955 TRIM67Q6ZTA4 783 aa9.35□□□□□ -0.91
VPS41-213ENST00000485955 ZNF598Q86UK7 904 aaKnown RBP9.35□□□□□ -0.91
VPS41-213ENST00000485955 CCDC24Q8N4L8 307 aa9.35□□□□□ -0.91
VPS41-213ENST00000485955 LILRB3O75022 631 aa9.34□□□□□ -0.91
VPS41-213ENST00000485955 RPIAP49247 311 aa9.34□□□□□ -0.91
VPS41-213ENST00000485955 CLK2P49760 499 aaKnown RBP9.34□□□□□ -0.91
VPS41-213ENST00000485955 TUSC1Q2TAM9 212 aa9.34□□□□□ -0.91
VPS41-213ENST00000485955 ZNF697Q5TEC3 545 aa9.34□□□□□ -0.91
VPS41-213ENST00000485955 FBXO31Q5XUX0 539 aaPredicted RBP9.34□□□□□ -0.91
VPS41-213ENST00000485955 PROCA1Q8NCQ7 364 aaPredicted RBP9.34□□□□□ -0.91
VPS41-213ENST00000485955 ZBTB3Q9H5J0 574 aa9.34□□□□□ -0.91
VPS41-213ENST00000485955 GFRA3O60609 400 aa9.33□□□□□ -0.92
VPS41-213ENST00000485955 SKIV2LQ15477 1246 aaKnown RBP9.33□□□□□ -0.92
VPS41-213ENST00000485955 RTL5Q5HYW3 569 aaPredicted RBP9.33□□□□□ -0.92
VPS41-213ENST00000485955 PTCRAQ6ISU1 281 aaPredicted RBP9.33□□□□□ -0.92
VPS41-213ENST00000485955 IL27Q8NEV9 243 aa9.33□□□□□ -0.92
VPS41-213ENST00000485955 NUDT12Q9BQG2 462 aa9.32□□□□□ -0.92
VPS41-213ENST00000485955 NUTM2BA6NNL0 878 aaPredicted RBP9.31□□□□□ -0.92
VPS41-213ENST00000485955 NUTM2EB1AL46 878 aaPredicted RBP9.31□□□□□ -0.92
VPS41-213ENST00000485955 CD2BP2O95400 341 aaKnown RBP9.31□□□□□ -0.92
VPS41-213ENST00000485955 SH3D19Q5HYK7 790 aa9.31□□□□□ -0.92
VPS41-213ENST00000485955 NUTM2DQ5VT03 806 aaPredicted RBP9.31□□□□□ -0.92
VPS41-213ENST00000485955 DESI1Q6ICB0 168 aa9.31□□□□□ -0.92
VPS41-213ENST00000485955 NUTM2AQ8IVF1 878 aaPredicted RBP9.31□□□□□ -0.92
VPS41-213ENST00000485955 PDZRN3Q9UPQ7 1066 aa9.31□□□□□ -0.92
VPS41-213ENST00000485955 ZBTB24O43167 697 aaPredicted RBP9.3□□□□□ -0.92
VPS41-213ENST00000485955 PER1O15534 1290 aaPredicted RBP9.29□□□□□ -0.92
VPS41-213ENST00000485955 GDF9O60383 454 aa9.29□□□□□ -0.92
VPS41-213ENST00000485955 PTPRNQ16849 979 aa9.29□□□□□ -0.92
VPS41-213ENST00000485955 EVA1BQ9NVM1 165 aa9.29□□□□□ -0.92
VPS41-213ENST00000485955 PKD2L1Q9P0L9 805 aa9.29□□□□□ -0.92
VPS41-213ENST00000485955 TNFRSF10AO00220 468 aa9.28□□□□□ -0.92
VPS41-213ENST00000485955 CCNYL3P0C7X3 344 aa9.28□□□□□ -0.92
VPS41-213ENST00000485955 FOXC1Q12948 553 aa9.28□□□□□ -0.92
VPS41-213ENST00000485955 TRIM32Q13049 653 aa9.28□□□□□ -0.92
VPS41-213ENST00000485955 LYPD8Q6UX82 237 aa9.28□□□□□ -0.92
VPS41-213ENST00000485955 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS41-213ENST00000485955 TSC1Q92574 1164 aa9.27□□□□□ -0.93
VPS41-213ENST00000485955 NRG2O14511 850 aaPredicted RBP9.25□□□□□ -0.93
VPS41-213ENST00000485955 SKOR1P84550 965 aa9.25□□□□□ -0.93
VPS41-213ENST00000485955 PRR20EP86478 221 aa9.25□□□□□ -0.93
VPS41-213ENST00000485955 PRR20CP86479 221 aa9.25□□□□□ -0.93
VPS41-213ENST00000485955 PRR20DP86480 221 aa9.25□□□□□ -0.93
VPS41-213ENST00000485955 PRR20BP86481 221 aa9.25□□□□□ -0.93
VPS41-213ENST00000485955 PRR20AP86496 221 aa9.25□□□□□ -0.93
VPS41-213ENST00000485955 KCNH2Q12809 1159 aa9.25□□□□□ -0.93
VPS41-213ENST00000485955 ATP1B4Q9UN42 357 aaPredicted RBP9.25□□□□□ -0.93
VPS41-213ENST00000485955 CTDSPL2Q05D32 466 aa9.24□□□□□ -0.93
VPS41-213ENST00000485955 LAPTM4AQ15012 233 aa9.24□□□□□ -0.93
VPS41-213ENST00000485955 LCE2BO14633 110 aa9.23□□□□□ -0.93
VPS41-213ENST00000485955 PPP2R2DQ66LE6 453 aa9.23□□□□□ -0.93
VPS41-213ENST00000485955 Q6ZNB5 142 aa9.23□□□□□ -0.93
VPS41-213ENST00000485955 UNC93B1Q9H1C4 597 aa9.23□□□□□ -0.93
VPS41-213ENST00000485955 MAP10Q9P2G4 905 aa9.23□□□□□ -0.93
VPS41-213ENST00000485955 F12P00748 615 aaPredicted RBP9.22□□□□□ -0.93
VPS41-213ENST00000485955 CTHP32929 405 aa9.22□□□□□ -0.93
VPS41-213ENST00000485955 GOPCQ9HD26 462 aa9.22□□□□□ -0.93
VPS41-213ENST00000485955 BAP1Q92560 729 aa9.21□□□□□ -0.94
VPS41-213ENST00000485955 WNT7AO00755 349 aa9.2□□□□□ -0.94
VPS41-213ENST00000485955 SH3BP2P78314 561 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms