RNA–Protein interactions for RNA: ENST00000485465.1

CHMP3-207, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 920 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-207ENST00000485465 LRRC7Q96NW7 1537 aa24.62■■□□□ 1.53
CHMP3-207ENST00000485465 SLC24A1O60721 1099 aa24.62■■□□□ 1.53
CHMP3-207ENST00000485465 TMEM94Q12767 1356 aa24.62■■□□□ 1.53
CHMP3-207ENST00000485465 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.61■■□□□ 1.53
CHMP3-207ENST00000485465 LTBP4Q8N2S1 1624 aa24.61■■□□□ 1.53
CHMP3-207ENST00000485465 NCOA3Q9Y6Q9 1424 aa24.61■■□□□ 1.53
CHMP3-207ENST00000485465 TMF1P82094 1093 aa24.58■■□□□ 1.53
CHMP3-207ENST00000485465 C14orf37Q86TY3 774 aa24.57■■□□□ 1.52
CHMP3-207ENST00000485465 ADGRL3Q9HAR2 1447 aa24.57■■□□□ 1.52
CHMP3-207ENST00000485465 EVC2Q86UK5 1308 aa24.57■■□□□ 1.52
CHMP3-207ENST00000485465 ADGRB2O60241 1585 aa24.55■■□□□ 1.52
CHMP3-207ENST00000485465 DISP3Q9P2K9 1392 aa24.54■■□□□ 1.52
CHMP3-207ENST00000485465 C11orf95C9JLR9 678 aaPredicted RBP24.54■■□□□ 1.52
CHMP3-207ENST00000485465 WASLO00401 505 aaPredicted RBP24.54■■□□□ 1.52
CHMP3-207ENST00000485465 C19orf44Q9H6X5 657 aa24.54■■□□□ 1.52
CHMP3-207ENST00000485465 NALCNQ8IZF0 1738 aa24.54■■□□□ 1.52
CHMP3-207ENST00000485465 TULP4Q9NRJ4 1543 aa24.54■■□□□ 1.52
CHMP3-207ENST00000485465 ZNF316A6NFI3 1004 aaPredicted RBP24.53■■□□□ 1.52
CHMP3-207ENST00000485465 CDK19Q9BWU1 502 aa24.53■■□□□ 1.52
CHMP3-207ENST00000485465 XIRP1Q702N8 1843 aaKnown RBP24.52■■□□□ 1.52
CHMP3-207ENST00000485465 CDCA8Q53HL2 280 aa24.51■■□□□ 1.51
CHMP3-207ENST00000485465 MSH6P52701 1360 aa24.5■■□□□ 1.51
CHMP3-207ENST00000485465 CDC42BPGQ6DT37 1551 aa24.5■■□□□ 1.51
CHMP3-207ENST00000485465 SRPK2P78362 688 aaKnown RBP24.49■■□□□ 1.51
CHMP3-207ENST00000485465 PUS7Q96PZ0 661 aaKnown RBP24.49■■□□□ 1.51
CHMP3-207ENST00000485465 KIF7Q2M1P5 1343 aa24.48■■□□□ 1.51
CHMP3-207ENST00000485465 CABP2Q9NPB3 220 aa24.48■■□□□ 1.51
CHMP3-207ENST00000485465 DCCP43146 1447 aa24.47■■□□□ 1.51
CHMP3-207ENST00000485465 WASHC2AQ641Q2 1341 aa24.46■■□□□ 1.51
CHMP3-207ENST00000485465 ATF3P18847 181 aa24.46■■□□□ 1.51
CHMP3-207ENST00000485465 CCDC7Q96M83 1385 aa24.45■■□□□ 1.5
CHMP3-207ENST00000485465 CADPS2Q86UW7 1296 aa24.44■■□□□ 1.5
CHMP3-207ENST00000485465 POLR3GLQ9BT43 218 aa24.44■■□□□ 1.5
CHMP3-207ENST00000485465 NUDT16Q96DE0 195 aaKnown RBP24.43■■□□□ 1.5
CHMP3-207ENST00000485465 FMN2Q9NZ56 1722 aa24.43■■□□□ 1.5
CHMP3-207ENST00000485465 NUTM2FA1L443 756 aa24.42■■□□□ 1.5
CHMP3-207ENST00000485465 ATAD2Q6PL18 1390 aa24.42■■□□□ 1.5
CHMP3-207ENST00000485465 PRR36Q9H6K5 1346 aa24.41■■□□□ 1.5
CHMP3-207ENST00000485465 ANKARQ7Z5J8 1434 aa24.41■■□□□ 1.5
CHMP3-207ENST00000485465 ATP7BP35670 1465 aa24.39■■□□□ 1.5
CHMP3-207ENST00000485465 CERKQ8TCT0 537 aa24.38■■□□□ 1.49
CHMP3-207ENST00000485465 CCDC61Q9Y6R9 512 aa24.38■■□□□ 1.49
CHMP3-207ENST00000485465 USP32Q8NFA0 1604 aa24.38■■□□□ 1.49
CHMP3-207ENST00000485465 MST1RQ04912 1400 aa24.37■■□□□ 1.49
CHMP3-207ENST00000485465 IQSEC2Q5JU85 1478 aa24.37■■□□□ 1.49
CHMP3-207ENST00000485465 C1orf167Q5SNV9 1468 aa24.36■■□□□ 1.49
CHMP3-207ENST00000485465 TMC1Q8TDI8 760 aa24.35■■□□□ 1.49
CHMP3-207ENST00000485465 SLC12A5Q9H2X9 1139 aa24.34■■□□□ 1.49
CHMP3-207ENST00000485465 CABP1Q9NZU7 370 aa24.34■■□□□ 1.49
CHMP3-207ENST00000485465 PPIP5K1Q6PFW1 1433 aa24.34■■□□□ 1.49
CHMP3-207ENST00000485465 NINLQ9Y2I6 1382 aa24.33■■□□□ 1.49
CHMP3-207ENST00000485465 SLAIN2Q9P270 581 aa24.33■■□□□ 1.49
CHMP3-207ENST00000485465 TOPAZ1Q8N9V7 1692 aa24.31■■□□□ 1.48
CHMP3-207ENST00000485465 PLEKHG3A1L390 1219 aa24.31■■□□□ 1.48
CHMP3-207ENST00000485465 ESCO1Q5FWF5 840 aa24.31■■□□□ 1.48
CHMP3-207ENST00000485465 MYOM1P52179 1685 aa24.3■■□□□ 1.48
CHMP3-207ENST00000485465 RGPD8O14715 1765 aaPredicted RBP24.3■■□□□ 1.48
CHMP3-207ENST00000485465 ORAI2Q96SN7 254 aa24.3■■□□□ 1.48
CHMP3-207ENST00000485465 ITSN1Q15811 1721 aa24.3■■□□□ 1.48
CHMP3-207ENST00000485465 PHF8Q9UPP1 1060 aa24.29■■□□□ 1.48
CHMP3-207ENST00000485465 PMFBP1Q8TBY8 1022 aa24.28■■□□□ 1.48
CHMP3-207ENST00000485465 TOM1O60784 492 aa24.27■■□□□ 1.48
CHMP3-207ENST00000485465 DDX10Q13206 875 aaKnown RBP24.27■■□□□ 1.48
CHMP3-207ENST00000485465 TERF2IPQ9NYB0 399 aa24.26■■□□□ 1.47
CHMP3-207ENST00000485465 PANK3Q9H999 370 aa24.25■■□□□ 1.47
CHMP3-207ENST00000485465 ACEP12821 1306 aa24.25■■□□□ 1.47
CHMP3-207ENST00000485465 ANKRD36BQ8N2N9 1353 aa24.25■■□□□ 1.47
CHMP3-207ENST00000485465 CD163L1Q9NR16 1453 aa24.25■■□□□ 1.47
CHMP3-207ENST00000485465 UBAP1LF5GYI3 381 aa24.24■■□□□ 1.47
CHMP3-207ENST00000485465 BRINP3Q76B58 766 aa24.24■■□□□ 1.47
CHMP3-207ENST00000485465 HDGFL2Q7Z4V5 671 aaPredicted RBP24.24■■□□□ 1.47
CHMP3-207ENST00000485465 NGDNQ8NEJ9 315 aaKnown RBP24.24■■□□□ 1.47
CHMP3-207ENST00000485465 POLR3AO14802 1390 aaPredicted RBP24.24■■□□□ 1.47
CHMP3-207ENST00000485465 CPSF1Q10570 1443 aaKnown RBP24.23■■□□□ 1.47
CHMP3-207ENST00000485465 A0A1W2PP64 1363 aa24.22■■□□□ 1.47
CHMP3-207ENST00000485465 ZNF692Q9BU19 519 aaPredicted RBP24.22■■□□□ 1.47
CHMP3-207ENST00000485465 KIF1AQ12756 1690 aa24.21■■□□□ 1.47
CHMP3-207ENST00000485465 FOXO3O43524 673 aa24.19■■□□□ 1.46
CHMP3-207ENST00000485465 CARD14Q9BXL6 1004 aa24.19■■□□□ 1.46
CHMP3-207ENST00000485465 KTN1Q86UP2 1357 aaKnown RBP24.18■■□□□ 1.46
CHMP3-207ENST00000485465 PSME1Q06323 249 aa24.17■■□□□ 1.46
CHMP3-207ENST00000485465 AKAP12Q02952 1782 aa24.16■■□□□ 1.46
CHMP3-207ENST00000485465 PIP4K2BP78356 416 aa24.16■■□□□ 1.46
CHMP3-207ENST00000485465 USP6P35125 1406 aa24.16■■□□□ 1.46
CHMP3-207ENST00000485465 PER1O15534 1290 aaPredicted RBP24.15■■□□□ 1.46
CHMP3-207ENST00000485465 ROBO1Q9Y6N7 1651 aa24.15■■□□□ 1.46
CHMP3-207ENST00000485465 NPHP3Q7Z494 1330 aa24.14■■□□□ 1.46
CHMP3-207ENST00000485465 DDX17Q92841 729 aaKnown RBP24.14■■□□□ 1.45
CHMP3-207ENST00000485465 NSD3Q9BZ95 1437 aa24.14■■□□□ 1.45
CHMP3-207ENST00000485465 EDC4Q6P2E9 1401 aaKnown RBP24.13■■□□□ 1.45
CHMP3-207ENST00000485465 KRT28Q7Z3Y7 464 aa24.13■■□□□ 1.45
CHMP3-207ENST00000485465 MON2Q7Z3U7 1717 aa24.13■■□□□ 1.45
CHMP3-207ENST00000485465 SSH2Q76I76 1423 aa24.12■■□□□ 1.45
CHMP3-207ENST00000485465 KNSTRNQ9Y448 316 aa24.12■■□□□ 1.45
CHMP3-207ENST00000485465 BRD4O60885 1362 aaPredicted RBP24.12■■□□□ 1.45
CHMP3-207ENST00000485465 SCAF1Q9H7N4 1312 aaKnown RBP24.11■■□□□ 1.45
CHMP3-207ENST00000485465 XPCQ01831 940 aaPredicted RBP24.11■■□□□ 1.45
CHMP3-207ENST00000485465 TTC21BQ7Z4L5 1316 aa24.1■■□□□ 1.45
CHMP3-207ENST00000485465 NHSL1Q5SYE7 1610 aa24.09■■□□□ 1.45
CHMP3-207ENST00000485465 NRKQ7Z2Y5 1582 aa24.08■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms