RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 MST1RQ04912 1400 aa22.91■■□□□ 1.26
UPF3A-208ENST00000484246 TONSLQ96HA7 1378 aa22.89■■□□□ 1.26
UPF3A-208ENST00000484246 PLEKHH1Q9ULM0 1364 aa22.89■■□□□ 1.26
UPF3A-208ENST00000484246 SCAF1Q9H7N4 1312 aaKnown RBP22.88■■□□□ 1.25
UPF3A-208ENST00000484246 MSH5O43196 834 aa22.86■■□□□ 1.25
UPF3A-208ENST00000484246 WAPLQ7Z5K2 1190 aa22.86■■□□□ 1.25
UPF3A-208ENST00000484246 ROBO1Q9Y6N7 1651 aa22.85■■□□□ 1.25
UPF3A-208ENST00000484246 HSPA1LP34931 641 aa22.84■■□□□ 1.25
UPF3A-208ENST00000484246 ADGRB2O60241 1585 aa22.84■■□□□ 1.25
UPF3A-208ENST00000484246 PRAM1Q96QH2 718 aa22.83■■□□□ 1.25
UPF3A-208ENST00000484246 GPRASP1Q5JY77 1395 aa22.83■■□□□ 1.25
UPF3A-208ENST00000484246 C1orf167Q5SNV9 1468 aa22.83■■□□□ 1.25
UPF3A-208ENST00000484246 TRPM1Q7Z4N2 1603 aa22.82■■□□□ 1.24
UPF3A-208ENST00000484246 NBPF1Q3BBV0 1214 aa22.82■■□□□ 1.24
UPF3A-208ENST00000484246 TRAK1Q9UPV9 953 aa22.82■■□□□ 1.24
UPF3A-208ENST00000484246 AHDC1Q5TGY3 1603 aaPredicted RBP22.81■■□□□ 1.24
UPF3A-208ENST00000484246 BRINP3Q76B58 766 aa22.8■■□□□ 1.24
UPF3A-208ENST00000484246 TIMELESSQ9UNS1 1208 aa22.8■■□□□ 1.24
UPF3A-208ENST00000484246 ARHGEF28Q8N1W1 1705 aaKnown RBP22.79■■□□□ 1.24
UPF3A-208ENST00000484246 RALGAPBQ86X10 1494 aa22.79■■□□□ 1.24
UPF3A-208ENST00000484246 NBPF8Q3BBV2 869 aa22.78■■□□□ 1.24
UPF3A-208ENST00000484246 POGKQ9P215 609 aa22.78■■□□□ 1.24
UPF3A-208ENST00000484246 ROCK2O75116 1388 aaKnown RBP22.76■■□□□ 1.23
UPF3A-208ENST00000484246 FMN2Q9NZ56 1722 aa22.74■■□□□ 1.23
UPF3A-208ENST00000484246 ANKARQ7Z5J8 1434 aa22.74■■□□□ 1.23
UPF3A-208ENST00000484246 EIF3AQ14152 1382 aaKnown RBP22.73■■□□□ 1.23
UPF3A-208ENST00000484246 COL16A1Q07092 1604 aaPredicted RBP22.72■■□□□ 1.23
UPF3A-208ENST00000484246 NHSL1Q5SYE7 1610 aa22.71■■□□□ 1.23
UPF3A-208ENST00000484246 SAFB2Q14151 953 aaKnown RBP eCLIP22.71■■□□□ 1.23
UPF3A-208ENST00000484246 CCER1Q8TC90 406 aaPredicted RBP22.71■■□□□ 1.23
UPF3A-208ENST00000484246 CENPJQ9HC77 1338 aaPredicted RBP22.69■■□□□ 1.22
UPF3A-208ENST00000484246 TULP4Q9NRJ4 1543 aa22.68■■□□□ 1.22
UPF3A-208ENST00000484246 MINK1Q8N4C8 1332 aaPredicted RBP22.67■■□□□ 1.22
UPF3A-208ENST00000484246 WASLO00401 505 aaPredicted RBP22.67■■□□□ 1.22
UPF3A-208ENST00000484246 ORAI2Q96SN7 254 aa22.67■■□□□ 1.22
UPF3A-208ENST00000484246 PHLPP1O60346 1717 aa22.67■■□□□ 1.22
UPF3A-208ENST00000484246 JCADQ9P266 1359 aa22.65■■□□□ 1.22
UPF3A-208ENST00000484246 SBNO2Q9Y2G9 1366 aa22.65■■□□□ 1.22
UPF3A-208ENST00000484246 KIF1AQ12756 1690 aa22.65■■□□□ 1.22
UPF3A-208ENST00000484246 SOS2Q07890 1332 aaPredicted RBP22.64■■□□□ 1.22
UPF3A-208ENST00000484246 USP32Q8NFA0 1604 aa22.64■■□□□ 1.21
UPF3A-208ENST00000484246 ATP7BP35670 1465 aa22.63■■□□□ 1.21
UPF3A-208ENST00000484246 ESCO1Q5FWF5 840 aa22.63■■□□□ 1.21
UPF3A-208ENST00000484246 HIRIP3Q9BW71 556 aaPredicted RBP22.63■■□□□ 1.21
UPF3A-208ENST00000484246 NPHP3Q7Z494 1330 aa22.62■■□□□ 1.21
UPF3A-208ENST00000484246 CARD11Q9BXL7 1154 aa22.62■■□□□ 1.21
UPF3A-208ENST00000484246 PRR36Q9H6K5 1346 aa22.61■■□□□ 1.21
UPF3A-208ENST00000484246 PXDNQ92626 1479 aa22.61■■□□□ 1.21
UPF3A-208ENST00000484246 QRICH2Q9H0J4 1663 aa22.6■■□□□ 1.21
UPF3A-208ENST00000484246 NUTM2FA1L443 756 aa22.59■■□□□ 1.21
UPF3A-208ENST00000484246 PHF8Q9UPP1 1060 aa22.58■■□□□ 1.21
UPF3A-208ENST00000484246 MED1Q15648 1581 aaPredicted RBP22.58■■□□□ 1.2
UPF3A-208ENST00000484246 LRRC59Q96AG4 307 aaKnown RBP22.57■■□□□ 1.2
UPF3A-208ENST00000484246 SHPRHQ149N8 1683 aa22.57■■□□□ 1.2
UPF3A-208ENST00000484246 DDX17Q92841 729 aaKnown RBP22.56■■□□□ 1.2
UPF3A-208ENST00000484246 CDK19Q9BWU1 502 aa22.56■■□□□ 1.2
UPF3A-208ENST00000484246 SPATA31A6Q5VVP1 1343 aa22.56■■□□□ 1.2
UPF3A-208ENST00000484246 PNPLA6Q8IY17 1366 aa22.54■■□□□ 1.2
UPF3A-208ENST00000484246 FOXO3O43524 673 aa22.54■■□□□ 1.2
UPF3A-208ENST00000484246 TOPAZ1Q8N9V7 1692 aa22.53■■□□□ 1.2
UPF3A-208ENST00000484246 NUDT16Q96DE0 195 aaKnown RBP22.53■■□□□ 1.2
UPF3A-208ENST00000484246 CCDC61Q9Y6R9 512 aa22.52■■□□□ 1.2
UPF3A-208ENST00000484246 EVC2Q86UK5 1308 aa22.52■■□□□ 1.2
UPF3A-208ENST00000484246 SBNO1A3KN83 1393 aa22.51■■□□□ 1.19
UPF3A-208ENST00000484246 ITSN1Q15811 1721 aa22.51■■□□□ 1.19
UPF3A-208ENST00000484246 POLR3AO14802 1390 aaPredicted RBP22.5■■□□□ 1.19
UPF3A-208ENST00000484246 PLEKHG3A1L390 1219 aa22.49■■□□□ 1.19
UPF3A-208ENST00000484246 USP47Q96K76 1375 aa22.49■■□□□ 1.19
UPF3A-208ENST00000484246 COL22A1Q8NFW1 1626 aaPredicted RBP22.48■■□□□ 1.19
UPF3A-208ENST00000484246 RGPD8O14715 1765 aaPredicted RBP22.48■■□□□ 1.19
UPF3A-208ENST00000484246 TNS3Q68CZ2 1445 aa22.48■■□□□ 1.19
UPF3A-208ENST00000484246 LRP6O75581 1613 aa22.47■■□□□ 1.19
UPF3A-208ENST00000484246 SRPK2P78362 688 aaKnown RBP22.47■■□□□ 1.19
UPF3A-208ENST00000484246 SPATA31A3Q5VYP0 1347 aa22.47■■□□□ 1.19
UPF3A-208ENST00000484246 ATAD2Q6PL18 1390 aa22.47■■□□□ 1.19
UPF3A-208ENST00000484246 SLC24A1O60721 1099 aa22.46■■□□□ 1.19
UPF3A-208ENST00000484246 PSME1Q06323 249 aa22.46■■□□□ 1.19
UPF3A-208ENST00000484246 KRT28Q7Z3Y7 464 aa22.46■■□□□ 1.19
UPF3A-208ENST00000484246 PMFBP1Q8TBY8 1022 aa22.46■■□□□ 1.19
UPF3A-208ENST00000484246 TESK2Q96S53 571 aa22.46■■□□□ 1.19
UPF3A-208ENST00000484246 PUS7Q96PZ0 661 aaKnown RBP22.45■■□□□ 1.18
UPF3A-208ENST00000484246 CABP2Q9NPB3 220 aa22.45■■□□□ 1.18
UPF3A-208ENST00000484246 PPIP5K1Q6PFW1 1433 aa22.45■■□□□ 1.18
UPF3A-208ENST00000484246 XPCQ01831 940 aaPredicted RBP22.44■■□□□ 1.18
UPF3A-208ENST00000484246 ST20-MTHFSA0A0A6YYL1 179 aa22.43■■□□□ 1.18
UPF3A-208ENST00000484246 TRPM3Q9HCF6 1732 aaPredicted RBP22.43■■□□□ 1.18
UPF3A-208ENST00000484246 ARHGEF10O15013 1369 aa22.42■■□□□ 1.18
UPF3A-208ENST00000484246 NGDNQ8NEJ9 315 aaKnown RBP22.42■■□□□ 1.18
UPF3A-208ENST00000484246 BRD4O60885 1362 aaPredicted RBP22.41■■□□□ 1.18
UPF3A-208ENST00000484246 ACEP12821 1306 aa22.4■■□□□ 1.18
UPF3A-208ENST00000484246 ALS2Q96Q42 1657 aa22.36■■□□□ 1.17
UPF3A-208ENST00000484246 CABP1Q9NZU7 370 aa22.36■■□□□ 1.17
UPF3A-208ENST00000484246 NINLQ9Y2I6 1382 aa22.36■■□□□ 1.17
UPF3A-208ENST00000484246 USP6P35125 1406 aa22.35■■□□□ 1.17
UPF3A-208ENST00000484246 SSH2Q76I76 1423 aa22.35■■□□□ 1.17
UPF3A-208ENST00000484246 CPSF1Q10570 1443 aaKnown RBP22.34■■□□□ 1.17
UPF3A-208ENST00000484246 NUTM2BA6NNL0 878 aaPredicted RBP22.32■■□□□ 1.16
UPF3A-208ENST00000484246 NUTM2EB1AL46 878 aaPredicted RBP22.32■■□□□ 1.16
UPF3A-208ENST00000484246 TMF1P82094 1093 aa22.32■■□□□ 1.16
UPF3A-208ENST00000484246 NUTM2AQ8IVF1 878 aaPredicted RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms