RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 BRINP3Q76B58 766 aa26.02■■□□□ 1.76
HDAC6-225ENST00000483506 NEUROD1Q13562 356 aa26.01■■□□□ 1.75
HDAC6-225ENST00000483506 COL16A1Q07092 1604 aaPredicted RBP26■■□□□ 1.75
HDAC6-225ENST00000483506 NHSL1Q5SYE7 1610 aa25.99■■□□□ 1.75
HDAC6-225ENST00000483506 ARHGEF28Q8N1W1 1705 aaKnown RBP25.99■■□□□ 1.75
HDAC6-225ENST00000483506 ADGRB2O60241 1585 aa25.99■■□□□ 1.75
HDAC6-225ENST00000483506 FMN2Q9NZ56 1722 aa25.98■■□□□ 1.75
HDAC6-225ENST00000483506 PRAM1Q96QH2 718 aa25.98■■□□□ 1.75
HDAC6-225ENST00000483506 PCGF6Q9BYE7 350 aa25.98■■□□□ 1.75
HDAC6-225ENST00000483506 TRAK1Q9UPV9 953 aa25.95■■□□□ 1.74
HDAC6-225ENST00000483506 TRPM1Q7Z4N2 1603 aa25.95■■□□□ 1.74
HDAC6-225ENST00000483506 MED1Q15648 1581 aaPredicted RBP25.92■■□□□ 1.74
HDAC6-225ENST00000483506 POGKQ9P215 609 aa25.92■■□□□ 1.74
HDAC6-225ENST00000483506 NBPF1Q3BBV0 1214 aa25.91■■□□□ 1.74
HDAC6-225ENST00000483506 TONSLQ96HA7 1378 aa25.89■■□□□ 1.74
HDAC6-225ENST00000483506 JCADQ9P266 1359 aa25.88■■□□□ 1.73
HDAC6-225ENST00000483506 ORAI2Q96SN7 254 aa25.88■■□□□ 1.73
HDAC6-225ENST00000483506 CLSPNQ9HAW4 1339 aa25.88■■□□□ 1.73
HDAC6-225ENST00000483506 SHPRHQ149N8 1683 aa25.87■■□□□ 1.73
HDAC6-225ENST00000483506 SAFB2Q14151 953 aaKnown RBP eCLIP25.87■■□□□ 1.73
HDAC6-225ENST00000483506 ANKARQ7Z5J8 1434 aa25.85■■□□□ 1.73
HDAC6-225ENST00000483506 KIF1AQ12756 1690 aa25.84■■□□□ 1.73
HDAC6-225ENST00000483506 USP32Q8NFA0 1604 aa25.84■■□□□ 1.73
HDAC6-225ENST00000483506 GPRASP1Q5JY77 1395 aa25.83■■□□□ 1.73
HDAC6-225ENST00000483506 NBPF8Q3BBV2 869 aa25.83■■□□□ 1.73
HDAC6-225ENST00000483506 ESCO1Q5FWF5 840 aa25.82■■□□□ 1.72
HDAC6-225ENST00000483506 SOS2Q07890 1332 aaPredicted RBP25.82■■□□□ 1.72
HDAC6-225ENST00000483506 RGPD8O14715 1765 aaPredicted RBP25.82■■□□□ 1.72
HDAC6-225ENST00000483506 DISP3Q9P2K9 1392 aa25.82■■□□□ 1.72
HDAC6-225ENST00000483506 EIF3AQ14152 1382 aaKnown RBP25.81■■□□□ 1.72
HDAC6-225ENST00000483506 TULP4Q9NRJ4 1543 aa25.8■■□□□ 1.72
HDAC6-225ENST00000483506 DDX17Q92841 729 aaKnown RBP25.8■■□□□ 1.72
HDAC6-225ENST00000483506 MINK1Q8N4C8 1332 aaPredicted RBP25.8■■□□□ 1.72
HDAC6-225ENST00000483506 ROCK2O75116 1388 aaKnown RBP25.8■■□□□ 1.72
HDAC6-225ENST00000483506 RALGAPBQ86X10 1494 aa25.79■■□□□ 1.72
HDAC6-225ENST00000483506 NUTM2FA1L443 756 aa25.79■■□□□ 1.72
HDAC6-225ENST00000483506 PXDNQ92626 1479 aa25.79■■□□□ 1.72
HDAC6-225ENST00000483506 WASLO00401 505 aaPredicted RBP25.78■■□□□ 1.72
HDAC6-225ENST00000483506 LRRC59Q96AG4 307 aaKnown RBP25.78■■□□□ 1.72
HDAC6-225ENST00000483506 HIRIP3Q9BW71 556 aaPredicted RBP25.78■■□□□ 1.72
HDAC6-225ENST00000483506 NPHP3Q7Z494 1330 aa25.78■■□□□ 1.72
HDAC6-225ENST00000483506 SPATA31A6Q5VVP1 1343 aa25.77■■□□□ 1.72
HDAC6-225ENST00000483506 QRICH2Q9H0J4 1663 aa25.75■■□□□ 1.71
HDAC6-225ENST00000483506 CENPJQ9HC77 1338 aaPredicted RBP25.75■■□□□ 1.71
HDAC6-225ENST00000483506 PNPLA6Q8IY17 1366 aa25.73■■□□□ 1.71
HDAC6-225ENST00000483506 PRR36Q9H6K5 1346 aa25.73■■□□□ 1.71
HDAC6-225ENST00000483506 ATP7BP35670 1465 aa25.72■■□□□ 1.71
HDAC6-225ENST00000483506 FOXO3O43524 673 aa25.72■■□□□ 1.71
HDAC6-225ENST00000483506 TIMELESSQ9UNS1 1208 aa25.72■■□□□ 1.71
HDAC6-225ENST00000483506 PHF8Q9UPP1 1060 aa25.72■■□□□ 1.71
HDAC6-225ENST00000483506 LRP6O75581 1613 aa25.71■■□□□ 1.71
HDAC6-225ENST00000483506 ITSN1Q15811 1721 aa25.71■■□□□ 1.71
HDAC6-225ENST00000483506 COL22A1Q8NFW1 1626 aaPredicted RBP25.7■■□□□ 1.71
HDAC6-225ENST00000483506 TOPAZ1Q8N9V7 1692 aa25.69■■□□□ 1.7
HDAC6-225ENST00000483506 CDK19Q9BWU1 502 aa25.67■■□□□ 1.7
HDAC6-225ENST00000483506 CARD11Q9BXL7 1154 aa25.65■■□□□ 1.7
HDAC6-225ENST00000483506 NUDT16Q96DE0 195 aaKnown RBP25.64■■□□□ 1.7
HDAC6-225ENST00000483506 SBNO2Q9Y2G9 1366 aa25.64■■□□□ 1.69
HDAC6-225ENST00000483506 XPCQ01831 940 aaPredicted RBP25.63■■□□□ 1.69
HDAC6-225ENST00000483506 PHF23Q9BUL5 403 aaPredicted RBP25.63■■□□□ 1.69
HDAC6-225ENST00000483506 SBNO1A3KN83 1393 aa25.62■■□□□ 1.69
HDAC6-225ENST00000483506 KRT28Q7Z3Y7 464 aa25.62■■□□□ 1.69
HDAC6-225ENST00000483506 CCER1Q8TC90 406 aaPredicted RBP25.62■■□□□ 1.69
HDAC6-225ENST00000483506 TRPM3Q9HCF6 1732 aaPredicted RBP25.62■■□□□ 1.69
HDAC6-225ENST00000483506 PMFBP1Q8TBY8 1022 aa25.61■■□□□ 1.69
HDAC6-225ENST00000483506 TNS3Q68CZ2 1445 aa25.61■■□□□ 1.69
HDAC6-225ENST00000483506 SPATA31A3Q5VYP0 1347 aa25.61■■□□□ 1.69
HDAC6-225ENST00000483506 RGS17Q9UGC6 210 aaPredicted RBP25.6■■□□□ 1.69
HDAC6-225ENST00000483506 PSME1Q06323 249 aa25.59■■□□□ 1.69
HDAC6-225ENST00000483506 CCDC61Q9Y6R9 512 aa25.59■■□□□ 1.69
HDAC6-225ENST00000483506 POLR3AO14802 1390 aaPredicted RBP25.58■■□□□ 1.69
HDAC6-225ENST00000483506 EVC2Q86UK5 1308 aa25.57■■□□□ 1.68
HDAC6-225ENST00000483506 PLEKHG3A1L390 1219 aa25.56■■□□□ 1.68
HDAC6-225ENST00000483506 ALS2Q96Q42 1657 aa25.55■■□□□ 1.68
HDAC6-225ENST00000483506 NUTM2BA6NNL0 878 aaPredicted RBP25.55■■□□□ 1.68
HDAC6-225ENST00000483506 NUTM2EB1AL46 878 aaPredicted RBP25.55■■□□□ 1.68
HDAC6-225ENST00000483506 SRPK2P78362 688 aaKnown RBP25.55■■□□□ 1.68
HDAC6-225ENST00000483506 ILDR2Q71H61 639 aa25.55■■□□□ 1.68
HDAC6-225ENST00000483506 NUTM2AQ8IVF1 878 aaPredicted RBP25.55■■□□□ 1.68
HDAC6-225ENST00000483506 ARHGEF10O15013 1369 aa25.54■■□□□ 1.68
HDAC6-225ENST00000483506 MEX3CQ5U5Q3 659 aaKnown RBP25.53■■□□□ 1.68
HDAC6-225ENST00000483506 NGDNQ8NEJ9 315 aaKnown RBP25.53■■□□□ 1.68
HDAC6-225ENST00000483506 CABP2Q9NPB3 220 aa25.53■■□□□ 1.68
HDAC6-225ENST00000483506 PPIP5K1Q6PFW1 1433 aa25.52■■□□□ 1.68
HDAC6-225ENST00000483506 MARF1Q9Y4F3 1742 aaKnown RBP25.51■■□□□ 1.67
HDAC6-225ENST00000483506 ACEP12821 1306 aa25.5■■□□□ 1.67
HDAC6-225ENST00000483506 ABCA3Q99758 1704 aa25.49■■□□□ 1.67
HDAC6-225ENST00000483506 ATAD2Q6PL18 1390 aa25.47■■□□□ 1.67
HDAC6-225ENST00000483506 TESK2Q96S53 571 aa25.46■■□□□ 1.67
HDAC6-225ENST00000483506 USP47Q96K76 1375 aa25.45■■□□□ 1.67
HDAC6-225ENST00000483506 ZNF772Q68DY9 489 aaPredicted RBP25.45■■□□□ 1.66
HDAC6-225ENST00000483506 POTEAQ6S8J7 498 aa25.45■■□□□ 1.66
HDAC6-225ENST00000483506 CRYBG1Q9Y4K1 1723 aa25.45■■□□□ 1.66
HDAC6-225ENST00000483506 BRD4O60885 1362 aaPredicted RBP25.44■■□□□ 1.66
HDAC6-225ENST00000483506 ADAMTS2O95450 1211 aa25.44■■□□□ 1.66
HDAC6-225ENST00000483506 AFF2P51816 1311 aa25.43■■□□□ 1.66
HDAC6-225ENST00000483506 ST20-MTHFSA0A0A6YYL1 179 aa25.43■■□□□ 1.66
HDAC6-225ENST00000483506 C8orf37Q96NL8 207 aa25.43■■□□□ 1.66
HDAC6-225ENST00000483506 PUS7Q96PZ0 661 aaKnown RBP25.43■■□□□ 1.66
HDAC6-225ENST00000483506 CABP1Q9NZU7 370 aa25.43■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms