RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 PUS10Q3MIT2 529 aaKnown RBP7.16□□□□□ -1.26
VPS41-212ENST00000482217 NKX2-3Q8TAU0 364 aa7.16□□□□□ -1.26
VPS41-212ENST00000482217 Q3C1V9 767 aa7.15□□□□□ -1.26
VPS41-212ENST00000482217 POLR3EQ9NVU0 708 aa7.15□□□□□ -1.26
VPS41-212ENST00000482217 SPTLC1O15269 473 aa7.14□□□□□ -1.27
VPS41-212ENST00000482217 TLL1O43897 1013 aa7.14□□□□□ -1.27
VPS41-212ENST00000482217 FMNL1O95466 1100 aaPredicted RBP7.14□□□□□ -1.27
VPS41-212ENST00000482217 RIC3Q7Z5B4 369 aa7.14□□□□□ -1.27
VPS41-212ENST00000482217 C14orf37Q86TY3 774 aa7.14□□□□□ -1.27
VPS41-212ENST00000482217 SPSB2Q99619 263 aa7.14□□□□□ -1.27
VPS41-212ENST00000482217 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS41-212ENST00000482217 SLC27A5Q9Y2P5 690 aa7.14□□□□□ -1.27
VPS41-212ENST00000482217 RSBN1LQ6PCB5 846 aaPredicted RBP7.13□□□□□ -1.27
VPS41-212ENST00000482217 PROCA1Q8NCQ7 364 aaPredicted RBP7.13□□□□□ -1.27
VPS41-212ENST00000482217 THAP11Q96EK4 314 aa7.13□□□□□ -1.27
VPS41-212ENST00000482217 SLC6A16Q9GZN6 736 aa7.13□□□□□ -1.27
VPS41-212ENST00000482217 ATP1B4Q9UN42 357 aaPredicted RBP7.13□□□□□ -1.27
VPS41-212ENST00000482217 V9GY48 417 aaPredicted RBP7.13□□□□□ -1.27
VPS41-212ENST00000482217 HOXA2O43364 376 aa7.12□□□□□ -1.27
VPS41-212ENST00000482217 FLIIQ13045 1269 aa7.12□□□□□ -1.27
VPS41-212ENST00000482217 ANKLE1Q8NAG6 615 aa7.12□□□□□ -1.27
VPS41-212ENST00000482217 LIMD1Q9UGP4 676 aa7.12□□□□□ -1.27
VPS41-212ENST00000482217 MOXD2PA6NHM9 499 aa7.11□□□□□ -1.27
VPS41-212ENST00000482217 RNF223E7ERA6 249 aa7.11□□□□□ -1.27
VPS41-212ENST00000482217 MSS51Q4VC12 460 aa7.11□□□□□ -1.27
VPS41-212ENST00000482217 BRICD5Q6PL45 260 aa7.11□□□□□ -1.27
VPS41-212ENST00000482217 S1PR4O95977 384 aa7.1□□□□□ -1.27
VPS41-212ENST00000482217 PPP2R2DQ66LE6 453 aa7.1□□□□□ -1.27
VPS41-212ENST00000482217 PRPF38BQ5VTL8 546 aaKnown RBP7.09□□□□□ -1.27
VPS41-212ENST00000482217 PRKD2Q9BZL6 878 aa7.09□□□□□ -1.27
VPS41-212ENST00000482217 NDUFV2P19404 249 aa7.08□□□□□ -1.28
VPS41-212ENST00000482217 LILRB3O75022 631 aa7.07□□□□□ -1.28
VPS41-212ENST00000482217 FDX1P10109 184 aa7.07□□□□□ -1.28
VPS41-212ENST00000482217 RFC5P40937 340 aa7.07□□□□□ -1.28
VPS41-212ENST00000482217 TMEM259Q4ZIN3 620 aa7.07□□□□□ -1.28
VPS41-212ENST00000482217 RNF19BQ6ZMZ0 732 aa7.07□□□□□ -1.28
VPS41-212ENST00000482217 BANK1Q8NDB2 785 aa7.07□□□□□ -1.28
VPS41-212ENST00000482217 USB1Q9BQ65 265 aaKnown RBP7.07□□□□□ -1.28
VPS41-212ENST00000482217 IRX2Q9BZI1 471 aaPredicted RBP7.07□□□□□ -1.28
VPS41-212ENST00000482217 FAM160A2Q8N612 972 aaPredicted RBP7.06□□□□□ -1.28
VPS41-212ENST00000482217 ZBTB3Q9H5J0 574 aa7.06□□□□□ -1.28
VPS41-212ENST00000482217 PCDHB15Q9Y5E8 787 aa7.06□□□□□ -1.28
VPS41-212ENST00000482217 SLC19A1P41440 591 aa7.05□□□□□ -1.28
VPS41-212ENST00000482217 MYT1Q01538 1121 aa7.05□□□□□ -1.28
VPS41-212ENST00000482217 LAPTM4AQ15012 233 aa7.05□□□□□ -1.28
VPS41-212ENST00000482217 QPCTQ16769 361 aa7.05□□□□□ -1.28
VPS41-212ENST00000482217 NPM2Q86SE8 214 aaKnown RBP7.05□□□□□ -1.28
VPS41-212ENST00000482217 SPDYE5A6NIY4 337 aa7.04□□□□□ -1.28
VPS41-212ENST00000482217 NUTM2BA6NNL0 878 aaPredicted RBP7.04□□□□□ -1.28
VPS41-212ENST00000482217 NUTM2EB1AL46 878 aaPredicted RBP7.04□□□□□ -1.28
VPS41-212ENST00000482217 MMP16P51512 607 aa7.04□□□□□ -1.28
VPS41-212ENST00000482217 CSPP1Q1MSJ5 1256 aa7.04□□□□□ -1.28
VPS41-212ENST00000482217 NUTM2DQ5VT03 806 aaPredicted RBP7.04□□□□□ -1.28
VPS41-212ENST00000482217 RETREG3Q86VR2 466 aa7.04□□□□□ -1.28
VPS41-212ENST00000482217 NUTM2AQ8IVF1 878 aaPredicted RBP7.04□□□□□ -1.28
VPS41-212ENST00000482217 HLA-CQ95604 372 aa7.04□□□□□ -1.28
VPS41-212ENST00000482217 PCDHGC3Q9UN70 934 aa7.04□□□□□ -1.28
VPS41-212ENST00000482217 PPEF1O14829 653 aaPredicted RBP7.03□□□□□ -1.28
VPS41-212ENST00000482217 DXOO77932 396 aaKnown RBP7.03□□□□□ -1.28
VPS41-212ENST00000482217 HRCP23327 699 aa7.03□□□□□ -1.28
VPS41-212ENST00000482217 GUCA2AQ02747 115 aa7.03□□□□□ -1.28
VPS41-212ENST00000482217 MTMR2Q13614 643 aa7.03□□□□□ -1.28
VPS41-212ENST00000482217 MCM6Q14566 821 aa7.03□□□□□ -1.28
VPS41-212ENST00000482217 FBXO31Q5XUX0 539 aaPredicted RBP7.03□□□□□ -1.28
VPS41-212ENST00000482217 ZMYND15Q9H091 742 aa7.03□□□□□ -1.28
VPS41-212ENST00000482217 SOCS7O14512 581 aa7.02□□□□□ -1.29
VPS41-212ENST00000482217 RPIAP49247 311 aa7.02□□□□□ -1.29
VPS41-212ENST00000482217 RTL5Q5HYW3 569 aaPredicted RBP7.02□□□□□ -1.29
VPS41-212ENST00000482217 CABLES1Q8TDN4 633 aa7.02□□□□□ -1.29
VPS41-212ENST00000482217 FCF1Q9Y324 198 aaKnown RBP7.02□□□□□ -1.29
VPS41-212ENST00000482217 C6orf229H3BNL8 230 aa7.01□□□□□ -1.29
VPS41-212ENST00000482217 SPRYD7Q5W111 196 aa7.01□□□□□ -1.29
VPS41-212ENST00000482217 ZNF598Q86UK7 904 aaKnown RBP7.01□□□□□ -1.29
VPS41-212ENST00000482217 PRDM9Q9NQV7 894 aa7.01□□□□□ -1.29
VPS41-212ENST00000482217 SUPT5HO00267 1087 aaKnown RBP7□□□□□ -1.29
VPS41-212ENST00000482217 JUNDP17535 347 aa7□□□□□ -1.29
VPS41-212ENST00000482217 APBB1O00213 710 aa6.99□□□□□ -1.29
VPS41-212ENST00000482217 ZBTB24O43167 697 aaPredicted RBP6.99□□□□□ -1.29
VPS41-212ENST00000482217 CD2BP2O95400 341 aaKnown RBP6.99□□□□□ -1.29
VPS41-212ENST00000482217 UBTFP17480 764 aaKnown RBP6.99□□□□□ -1.29
VPS41-212ENST00000482217 TRIM26Q12899 539 aaPredicted RBP6.99□□□□□ -1.29
VPS41-212ENST00000482217 DESI1Q6ICB0 168 aa6.99□□□□□ -1.29
VPS41-212ENST00000482217 LIAT1Q6ZQX7 453 aa6.99□□□□□ -1.29
VPS41-212ENST00000482217 HELBQ8NG08 1087 aaPredicted RBP6.99□□□□□ -1.29
VPS41-212ENST00000482217 EMID1Q96A84 441 aaPredicted RBP6.99□□□□□ -1.29
VPS41-212ENST00000482217 A6NJR5 290 aa6.98□□□□□ -1.29
VPS41-212ENST00000482217 AP1G2O75843 785 aa6.98□□□□□ -1.29
VPS41-212ENST00000482217 PLA2G2CQ5R387 149 aa6.98□□□□□ -1.29
VPS41-212ENST00000482217 SYMPKQ92797 1274 aaKnown RBP6.98□□□□□ -1.29
VPS41-212ENST00000482217 NRG2O14511 850 aaPredicted RBP6.97□□□□□ -1.29
VPS41-212ENST00000482217 PRR20EP86478 221 aa6.97□□□□□ -1.29
VPS41-212ENST00000482217 PRR20CP86479 221 aa6.97□□□□□ -1.29
VPS41-212ENST00000482217 PRR20DP86480 221 aa6.97□□□□□ -1.29
VPS41-212ENST00000482217 PRR20BP86481 221 aa6.97□□□□□ -1.29
VPS41-212ENST00000482217 PRR20AP86496 221 aa6.97□□□□□ -1.29
VPS41-212ENST00000482217 ZNF697Q5TEC3 545 aa6.97□□□□□ -1.29
VPS41-212ENST00000482217 SNRKQ9NRH2 765 aa6.97□□□□□ -1.29
VPS41-212ENST00000482217 CFAP99D6REC4 459 aa6.96□□□□□ -1.3
VPS41-212ENST00000482217 RAD21O60216 631 aa6.96□□□□□ -1.3
VPS41-212ENST00000482217 GFRA3O60609 400 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms