RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 HFM1A2PYH4 1435 aa17.16■□□□□ 0.34
TTC28-206ENST00000480563 GJD4Q96KN9 370 aaPredicted RBP17.16■□□□□ 0.34
TTC28-206ENST00000480563 RPGRIP1LQ68CZ1 1315 aa17.16■□□□□ 0.34
TTC28-206ENST00000480563 PRAG1Q86YV5 1406 aa17.15■□□□□ 0.34
TTC28-206ENST00000480563 FOXO3O43524 673 aa17.15■□□□□ 0.34
TTC28-206ENST00000480563 MYOM2P54296 1465 aa17.15■□□□□ 0.34
TTC28-206ENST00000480563 BCL9LQ86UU0 1499 aa17.15■□□□□ 0.34
TTC28-206ENST00000480563 XPCQ01831 940 aaPredicted RBP17.14■□□□□ 0.33
TTC28-206ENST00000480563 COL22A1Q8NFW1 1626 aaPredicted RBP17.14■□□□□ 0.33
TTC28-206ENST00000480563 KIF1BO60333 1816 aa17.13■□□□□ 0.33
TTC28-206ENST00000480563 PXDNQ92626 1479 aa17.11■□□□□ 0.33
TTC28-206ENST00000480563 NUTM2FA1L443 756 aa17.1■□□□□ 0.33
TTC28-206ENST00000480563 LRPPRCP42704 1394 aaKnown RBP17.1■□□□□ 0.33
TTC28-206ENST00000480563 UNC5CLQ8IV45 518 aa17.09■□□□□ 0.33
TTC28-206ENST00000480563 STK26Q9P289 416 aa17.09■□□□□ 0.33
TTC28-206ENST00000480563 NAIPQ13075 1403 aa17.09■□□□□ 0.33
TTC28-206ENST00000480563 WAPLQ7Z5K2 1190 aa17.08■□□□□ 0.32
TTC28-206ENST00000480563 SLC4A1APQ9BWU0 796 aaKnown RBP17.08■□□□□ 0.32
TTC28-206ENST00000480563 CDC42BPGQ6DT37 1551 aa17.07■□□□□ 0.32
TTC28-206ENST00000480563 BLMP54132 1417 aaPredicted RBP17.05■□□□□ 0.32
TTC28-206ENST00000480563 SPATA31A3Q5VYP0 1347 aa17.05■□□□□ 0.32
TTC28-206ENST00000480563 ADGRF5Q8IZF2 1346 aa17.05■□□□□ 0.32
TTC28-206ENST00000480563 EP400Q96L91 3159 aa17.05■□□□□ 0.32
TTC28-206ENST00000480563 RALGAPBQ86X10 1494 aa17.05■□□□□ 0.32
TTC28-206ENST00000480563 DEFB132Q7Z7B7 95 aa17.04■□□□□ 0.32
TTC28-206ENST00000480563 SLIT2O94813 1529 aa17.03■□□□□ 0.32
TTC28-206ENST00000480563 KRT28Q7Z3Y7 464 aa17.03■□□□□ 0.32
TTC28-206ENST00000480563 MARF1Q9Y4F3 1742 aaKnown RBP17.02■□□□□ 0.32
TTC28-206ENST00000480563 SF3B2Q13435 895 aaKnown RBP17.02■□□□□ 0.32
TTC28-206ENST00000480563 RGL3Q3MIN7 710 aa17.02■□□□□ 0.32
TTC28-206ENST00000480563 TMEM132EQ6IEE7 984 aa17.02■□□□□ 0.32
TTC28-206ENST00000480563 SEPT12Q8IYM1 358 aa17.02■□□□□ 0.32
TTC28-206ENST00000480563 PPLO60437 1756 aa17.02■□□□□ 0.31
TTC28-206ENST00000480563 ABCC11Q96J66 1382 aa17.02■□□□□ 0.31
TTC28-206ENST00000480563 HAP1P54257 671 aaPredicted RBP17.01■□□□□ 0.31
TTC28-206ENST00000480563 TECPR2O15040 1411 aa17.01■□□□□ 0.31
TTC28-206ENST00000480563 GLI3P10071 1580 aa17.01■□□□□ 0.31
TTC28-206ENST00000480563 PLEKHH1Q9ULM0 1364 aa17.01■□□□□ 0.31
TTC28-206ENST00000480563 RRBP1Q9P2E9 1410 aaKnown RBP17■□□□□ 0.31
TTC28-206ENST00000480563 PLEKHG5O94827 1062 aa16.99■□□□□ 0.31
TTC28-206ENST00000480563 VPS72Q15906 364 aa16.99■□□□□ 0.31
TTC28-206ENST00000480563 CABLES1Q8TDN4 633 aa16.99■□□□□ 0.31
TTC28-206ENST00000480563 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.99■□□□□ 0.31
TTC28-206ENST00000480563 CCDC144AA2RUR9 1427 aa16.98■□□□□ 0.31
TTC28-206ENST00000480563 ONECUT3O60422 494 aaPredicted RBP16.98■□□□□ 0.31
TTC28-206ENST00000480563 PSME1Q06323 249 aa16.98■□□□□ 0.31
TTC28-206ENST00000480563 CCDC9Q9Y3X0 531 aaKnown RBP16.98■□□□□ 0.31
TTC28-206ENST00000480563 PHF8Q9UPP1 1060 aa16.97■□□□□ 0.31
TTC28-206ENST00000480563 ANKRD30BQ9BXX2 1392 aa16.97■□□□□ 0.31
TTC28-206ENST00000480563 KRT27Q7Z3Y8 459 aa16.96■□□□□ 0.31
TTC28-206ENST00000480563 LMOD2Q6P5Q4 547 aa16.95■□□□□ 0.3
TTC28-206ENST00000480563 SIRT1Q96EB6 747 aa16.95■□□□□ 0.3
TTC28-206ENST00000480563 USP32Q8NFA0 1604 aa16.94■□□□□ 0.3
TTC28-206ENST00000480563 TNS3Q68CZ2 1445 aa16.94■□□□□ 0.3
TTC28-206ENST00000480563 SPATA31E1Q6ZUB1 1445 aa16.94■□□□□ 0.3
TTC28-206ENST00000480563 YTHDC2Q9H6S0 1430 aaKnown RBP16.94■□□□□ 0.3
TTC28-206ENST00000480563 KIF1AQ12756 1690 aa16.93■□□□□ 0.3
TTC28-206ENST00000480563 FMN2Q9NZ56 1722 aa16.93■□□□□ 0.3
TTC28-206ENST00000480563 BRWD3Q6RI45 1802 aa16.92■□□□□ 0.3
TTC28-206ENST00000480563 FAM83GA6ND36 823 aa16.92■□□□□ 0.3
TTC28-206ENST00000480563 SBNO1A3KN83 1393 aa16.91■□□□□ 0.3
TTC28-206ENST00000480563 PIK3C2GO75747 1445 aa16.91■□□□□ 0.3
TTC28-206ENST00000480563 A0A0G2JS52 829 aa16.91■□□□□ 0.3
TTC28-206ENST00000480563 PSDA5PKW4 1024 aaPredicted RBP16.91■□□□□ 0.3
TTC28-206ENST00000480563 BAG6P46379 1132 aa16.91■□□□□ 0.3
TTC28-206ENST00000480563 MYT1Q01538 1121 aa16.91■□□□□ 0.3
TTC28-206ENST00000480563 MPHOSPH9Q99550 1183 aa16.9■□□□□ 0.3
TTC28-206ENST00000480563 C14orf93Q9H972 538 aaKnown RBP16.9■□□□□ 0.3
TTC28-206ENST00000480563 ARHGEF10O15013 1369 aa16.89■□□□□ 0.3
TTC28-206ENST00000480563 KNDC1Q76NI1 1749 aa16.89■□□□□ 0.29
TTC28-206ENST00000480563 HRCP23327 699 aa16.88■□□□□ 0.29
TTC28-206ENST00000480563 SAFB2Q14151 953 aaKnown RBP eCLIP16.88■□□□□ 0.29
TTC28-206ENST00000480563 FAM98CQ17RN3 349 aaKnown RBP16.88■□□□□ 0.29
TTC28-206ENST00000480563 PMFBP1Q8TBY8 1022 aa16.88■□□□□ 0.29
TTC28-206ENST00000480563 DHX57Q6P158 1386 aaKnown RBP16.88■□□□□ 0.29
TTC28-206ENST00000480563 NRXN1Q9ULB1 1477 aa16.87■□□□□ 0.29
TTC28-206ENST00000480563 CFAP70Q5T0N1 1121 aa16.87■□□□□ 0.29
TTC28-206ENST00000480563 PRAM1Q96QH2 718 aa16.87■□□□□ 0.29
TTC28-206ENST00000480563 BTG4Q9NY30 223 aa16.87■□□□□ 0.29
TTC28-206ENST00000480563 LRP5O75197 1615 aa16.85■□□□□ 0.29
TTC28-206ENST00000480563 PLCH1Q4KWH8 1693 aa16.85■□□□□ 0.29
TTC28-206ENST00000480563 NWD2Q9ULI1 1742 aa16.85■□□□□ 0.29
TTC28-206ENST00000480563 EN1Q05925 392 aaPredicted RBP16.85■□□□□ 0.29
TTC28-206ENST00000480563 POGKQ9P215 609 aa16.85■□□□□ 0.29
TTC28-206ENST00000480563 IFT172Q9UG01 1749 aa16.84■□□□□ 0.29
TTC28-206ENST00000480563 RGPD8O14715 1765 aaPredicted RBP16.84■□□□□ 0.29
TTC28-206ENST00000480563 FAM182BQ5T319 152 aa16.83■□□□□ 0.28
TTC28-206ENST00000480563 ANKARQ7Z5J8 1434 aa16.81■□□□□ 0.28
TTC28-206ENST00000480563 R3HDM1Q15032 1099 aaKnown RBP16.81■□□□□ 0.28
TTC28-206ENST00000480563 GPRASP1Q5JY77 1395 aa16.8■□□□□ 0.28
TTC28-206ENST00000480563 SPATA31A5Q5VU36 1347 aa16.8■□□□□ 0.28
TTC28-206ENST00000480563 SPATA31A7Q8IWB4 1347 aa16.8■□□□□ 0.28
TTC28-206ENST00000480563 ABCA3Q99758 1704 aa16.79■□□□□ 0.28
TTC28-206ENST00000480563 ACIN1Q9UKV3 1341 aaKnown RBP16.78■□□□□ 0.28
TTC28-206ENST00000480563 HIRIP3Q9BW71 556 aaPredicted RBP16.78■□□□□ 0.28
TTC28-206ENST00000480563 EZH2Q15910 746 aaKnown RBP16.77■□□□□ 0.28
TTC28-206ENST00000480563 TRAK1Q9UPV9 953 aa16.77■□□□□ 0.28
TTC28-206ENST00000480563 NRAPQ86VF7 1730 aa16.76■□□□□ 0.27
TTC28-206ENST00000480563 MINK1Q8N4C8 1332 aaPredicted RBP16.76■□□□□ 0.27
TTC28-206ENST00000480563 PAK3O75914 559 aaPredicted RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms