RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 STRCQ7RTU9 1775 aa24.4■■□□□ 1.5
UPF3A-206ENST00000480362 CHD2O14647 1828 aaKnown RBP24.4■■□□□ 1.5
UPF3A-206ENST00000480362 XRN1Q8IZH2 1706 aaKnown RBP24.39■■□□□ 1.5
UPF3A-206ENST00000480362 KCNA6P17658 529 aa24.39■■□□□ 1.49
UPF3A-206ENST00000480362 EVC2Q86UK5 1308 aa24.37■■□□□ 1.49
UPF3A-206ENST00000480362 PTCH1Q13635 1447 aa24.36■■□□□ 1.49
UPF3A-206ENST00000480362 TULP4Q9NRJ4 1543 aa24.33■■□□□ 1.49
UPF3A-206ENST00000480362 PUS7Q96PZ0 661 aaKnown RBP24.31■■□□□ 1.48
UPF3A-206ENST00000480362 CDK19Q9BWU1 502 aa24.3■■□□□ 1.48
UPF3A-206ENST00000480362 CABP2Q9NPB3 220 aa24.3■■□□□ 1.48
UPF3A-206ENST00000480362 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.3■■□□□ 1.48
UPF3A-206ENST00000480362 SRPK2P78362 688 aaKnown RBP24.29■■□□□ 1.48
UPF3A-206ENST00000480362 NWD1Q149M9 1564 aa24.29■■□□□ 1.48
UPF3A-206ENST00000480362 DMRT2Q9Y5R5 561 aa24.28■■□□□ 1.48
UPF3A-206ENST00000480362 WASLO00401 505 aaPredicted RBP24.27■■□□□ 1.48
UPF3A-206ENST00000480362 PROSER2Q86WR7 435 aaPredicted RBP24.24■■□□□ 1.47
UPF3A-206ENST00000480362 RBM33Q96EV2 1170 aaKnown RBP24.23■■□□□ 1.47
UPF3A-206ENST00000480362 ADGRB2O60241 1585 aa24.23■■□□□ 1.47
UPF3A-206ENST00000480362 TMC1Q8TDI8 760 aa24.22■■□□□ 1.47
UPF3A-206ENST00000480362 PANK3Q9H999 370 aa24.22■■□□□ 1.47
UPF3A-206ENST00000480362 MYOM1P52179 1685 aa24.21■■□□□ 1.47
UPF3A-206ENST00000480362 NKTRP30414 1462 aaKnown RBP24.21■■□□□ 1.47
UPF3A-206ENST00000480362 ATAD2Q6PL18 1390 aa24.21■■□□□ 1.47
UPF3A-206ENST00000480362 STRCP1A6NGW2 1772 aa24.21■■□□□ 1.47
UPF3A-206ENST00000480362 SLC12A5Q9H2X9 1139 aa24.2■■□□□ 1.46
UPF3A-206ENST00000480362 NUDT16Q96DE0 195 aaKnown RBP24.17■■□□□ 1.46
UPF3A-206ENST00000480362 ZNF335Q9H4Z2 1342 aaPredicted RBP24.16■■□□□ 1.46
UPF3A-206ENST00000480362 C14orf37Q86TY3 774 aa24.16■■□□□ 1.46
UPF3A-206ENST00000480362 MIER1Q8N108 512 aa24.15■■□□□ 1.46
UPF3A-206ENST00000480362 ADGRL3Q9HAR2 1447 aa24.15■■□□□ 1.46
UPF3A-206ENST00000480362 NALCNQ8IZF0 1738 aa24.15■■□□□ 1.46
UPF3A-206ENST00000480362 PER1O15534 1290 aaPredicted RBP24.14■■□□□ 1.45
UPF3A-206ENST00000480362 NINLQ9Y2I6 1382 aa24.14■■□□□ 1.45
UPF3A-206ENST00000480362 PRR36Q9H6K5 1346 aa24.13■■□□□ 1.45
UPF3A-206ENST00000480362 NUTM2FA1L443 756 aa24.13■■□□□ 1.45
UPF3A-206ENST00000480362 ANP32CO43423 234 aa24.13■■□□□ 1.45
UPF3A-206ENST00000480362 CABP1Q9NZU7 370 aa24.13■■□□□ 1.45
UPF3A-206ENST00000480362 CCDC61Q9Y6R9 512 aa24.12■■□□□ 1.45
UPF3A-206ENST00000480362 TMEM94Q12767 1356 aa24.12■■□□□ 1.45
UPF3A-206ENST00000480362 CARD14Q9BXL6 1004 aa24.1■■□□□ 1.45
UPF3A-206ENST00000480362 ATP7BP35670 1465 aa24.1■■□□□ 1.45
UPF3A-206ENST00000480362 CDC42BPGQ6DT37 1551 aa24.1■■□□□ 1.45
UPF3A-206ENST00000480362 NCOA3Q9Y6Q9 1424 aa24.1■■□□□ 1.45
UPF3A-206ENST00000480362 C19orf44Q9H6X5 657 aa24.09■■□□□ 1.45
UPF3A-206ENST00000480362 KNSTRNQ9Y448 316 aa24.09■■□□□ 1.45
UPF3A-206ENST00000480362 PPIP5K1Q6PFW1 1433 aa24.09■■□□□ 1.45
UPF3A-206ENST00000480362 ANKRD36BQ8N2N9 1353 aa24.08■■□□□ 1.45
UPF3A-206ENST00000480362 FMN2Q9NZ56 1722 aa24.08■■□□□ 1.45
UPF3A-206ENST00000480362 TERF2IPQ9NYB0 399 aa24.08■■□□□ 1.45
UPF3A-206ENST00000480362 USP32Q8NFA0 1604 aa24.06■■□□□ 1.44
UPF3A-206ENST00000480362 LRRC7Q96NW7 1537 aa24.06■■□□□ 1.44
UPF3A-206ENST00000480362 CNGB1Q14028 1251 aaPredicted RBP24.06■■□□□ 1.44
UPF3A-206ENST00000480362 HDGFL2Q7Z4V5 671 aaPredicted RBP24.06■■□□□ 1.44
UPF3A-206ENST00000480362 ANKARQ7Z5J8 1434 aa24.05■■□□□ 1.44
UPF3A-206ENST00000480362 CD163L1Q9NR16 1453 aa24.05■■□□□ 1.44
UPF3A-206ENST00000480362 A0A1W2PP64 1363 aa24.04■■□□□ 1.44
UPF3A-206ENST00000480362 PLEKHG3A1L390 1219 aa24.04■■□□□ 1.44
UPF3A-206ENST00000480362 TOPAZ1Q8N9V7 1692 aa24.03■■□□□ 1.44
UPF3A-206ENST00000480362 PRKRIP1Q9H875 184 aaPredicted RBP24.03■■□□□ 1.44
UPF3A-206ENST00000480362 NSD3Q9BZ95 1437 aa24.02■■□□□ 1.44
UPF3A-206ENST00000480362 RGPD8O14715 1765 aaPredicted RBP24.02■■□□□ 1.44
UPF3A-206ENST00000480362 XIRP1Q702N8 1843 aaKnown RBP24.02■■□□□ 1.44
UPF3A-206ENST00000480362 AMER1Q5JTC6 1135 aaPredicted RBP24.01■■□□□ 1.43
UPF3A-206ENST00000480362 CPSF1Q10570 1443 aaKnown RBP24.01■■□□□ 1.43
UPF3A-206ENST00000480362 ATF3P18847 181 aa24■■□□□ 1.43
UPF3A-206ENST00000480362 CC2D1BQ5T0F9 858 aaKnown RBP24■■□□□ 1.43
UPF3A-206ENST00000480362 ITSN1Q15811 1721 aa24■■□□□ 1.43
UPF3A-206ENST00000480362 MSH6P52701 1360 aa24■■□□□ 1.43
UPF3A-206ENST00000480362 PMFBP1Q8TBY8 1022 aa23.99■■□□□ 1.43
UPF3A-206ENST00000480362 ZNF692Q9BU19 519 aaPredicted RBP23.98■■□□□ 1.43
UPF3A-206ENST00000480362 ACEP12821 1306 aa23.98■■□□□ 1.43
UPF3A-206ENST00000480362 KTN1Q86UP2 1357 aaKnown RBP23.98■■□□□ 1.43
UPF3A-206ENST00000480362 DCCP43146 1447 aa23.98■■□□□ 1.43
UPF3A-206ENST00000480362 NPC1L1Q9UHC9 1359 aa23.96■■□□□ 1.43
UPF3A-206ENST00000480362 CADPS2Q86UW7 1296 aa23.96■■□□□ 1.43
UPF3A-206ENST00000480362 RALBP1Q15311 655 aa23.95■■□□□ 1.42
UPF3A-206ENST00000480362 ESCO1Q5FWF5 840 aa23.95■■□□□ 1.42
UPF3A-206ENST00000480362 NGDNQ8NEJ9 315 aaKnown RBP23.95■■□□□ 1.42
UPF3A-206ENST00000480362 PHF8Q9UPP1 1060 aa23.95■■□□□ 1.42
UPF3A-206ENST00000480362 AKAP12Q02952 1782 aa23.94■■□□□ 1.42
UPF3A-206ENST00000480362 CGNL1Q0VF96 1302 aa23.94■■□□□ 1.42
UPF3A-206ENST00000480362 POLR3AO14802 1390 aaPredicted RBP23.93■■□□□ 1.42
UPF3A-206ENST00000480362 LTBP4Q8N2S1 1624 aa23.93■■□□□ 1.42
UPF3A-206ENST00000480362 C1orf167Q5SNV9 1468 aa23.93■■□□□ 1.42
UPF3A-206ENST00000480362 ORAI2Q96SN7 254 aa23.92■■□□□ 1.42
UPF3A-206ENST00000480362 MST1RQ04912 1400 aa23.92■■□□□ 1.42
UPF3A-206ENST00000480362 PARD3Q8TEW0 1356 aa23.91■■□□□ 1.42
UPF3A-206ENST00000480362 CCER2I3L3R5 266 aa23.91■■□□□ 1.42
UPF3A-206ENST00000480362 EDC4Q6P2E9 1401 aaKnown RBP23.91■■□□□ 1.42
UPF3A-206ENST00000480362 MON2Q7Z3U7 1717 aa23.9■■□□□ 1.42
UPF3A-206ENST00000480362 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.9■■□□□ 1.42
UPF3A-206ENST00000480362 FYB1O15117 783 aa23.89■■□□□ 1.41
UPF3A-206ENST00000480362 USP6P35125 1406 aa23.88■■□□□ 1.41
UPF3A-206ENST00000480362 NSD2O96028 1365 aa23.87■■□□□ 1.41
UPF3A-206ENST00000480362 MYBBP1AQ9BQG0 1328 aaKnown RBP23.86■■□□□ 1.41
UPF3A-206ENST00000480362 MORC1Q86VD1 984 aa23.86■■□□□ 1.41
UPF3A-206ENST00000480362 GGNBP2Q9H3C7 697 aa23.86■■□□□ 1.41
UPF3A-206ENST00000480362 TTC21BQ7Z4L5 1316 aa23.85■■□□□ 1.41
UPF3A-206ENST00000480362 SLAIN2Q9P270 581 aa23.84■■□□□ 1.41
UPF3A-206ENST00000480362 SSH2Q76I76 1423 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms