RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 MAP3K4Q9Y6R4 1608 aa10.08□□□□□ -0.8
USP48-208ENST00000479177 CROCC2H7BZ55 1655 aa10.08□□□□□ -0.8
USP48-208ENST00000479177 ABCC1P33527 1531 aa10.07□□□□□ -0.8
USP48-208ENST00000479177 FAM50AQ14320 339 aaKnown RBP10.07□□□□□ -0.8
USP48-208ENST00000479177 ZDHHC16Q969W1 377 aa10.07□□□□□ -0.8
USP48-208ENST00000479177 CFDP1Q9UEE9 299 aaPredicted RBP10.07□□□□□ -0.8
USP48-208ENST00000479177 ARHGEF5Q12774 1597 aa10.06□□□□□ -0.8
USP48-208ENST00000479177 CFAP74Q9C0B2 1584 aa10.06□□□□□ -0.8
USP48-208ENST00000479177 KIF13AQ9H1H9 1805 aa10.06□□□□□ -0.8
USP48-208ENST00000479177 SYCP2Q9BX26 1530 aa10.06□□□□□ -0.8
USP48-208ENST00000479177 ZNF644Q9H582 1327 aaPredicted RBP10.06□□□□□ -0.8
USP48-208ENST00000479177 PLEKHH2Q8IVE3 1493 aa10.05□□□□□ -0.8
USP48-208ENST00000479177 DAPK1P53355 1430 aa10.05□□□□□ -0.8
USP48-208ENST00000479177 PTPRKQ15262 1439 aa10.05□□□□□ -0.8
USP48-208ENST00000479177 FANCAO15360 1455 aa10.04□□□□□ -0.8
USP48-208ENST00000479177 PROX2Q3B8N5 592 aa10.04□□□□□ -0.8
USP48-208ENST00000479177 ABCC5O15440 1437 aa10.04□□□□□ -0.8
USP48-208ENST00000479177 CD109Q6YHK3 1445 aa10.04□□□□□ -0.8
USP48-208ENST00000479177 MBD5Q9P267 1494 aa10.04□□□□□ -0.8
USP48-208ENST00000479177 SHANK2Q9UPX8 1470 aa10.04□□□□□ -0.8
USP48-208ENST00000479177 PPRC1Q5VV67 1664 aaKnown RBP10.03□□□□□ -0.8
USP48-208ENST00000479177 ADGBQ8N7X0 1667 aa10.03□□□□□ -0.8
USP48-208ENST00000479177 NBPF3Q9H094 633 aa10.03□□□□□ -0.8
USP48-208ENST00000479177 KIAA1107Q9UPP5 1409 aa10.03□□□□□ -0.8
USP48-208ENST00000479177 ARIH1Q9Y4X5 557 aaPredicted RBP10.03□□□□□ -0.8
USP48-208ENST00000479177 CCDC141Q6ZP82 1450 aa10.03□□□□□ -0.8
USP48-208ENST00000479177 ARHGEF12Q9NZN5 1544 aa10.02□□□□□ -0.8
USP48-208ENST00000479177 AKNAQ7Z591 1439 aa10.02□□□□□ -0.81
USP48-208ENST00000479177 PDIA6Q15084 440 aa10.02□□□□□ -0.81
USP48-208ENST00000479177 ZNF777Q9ULD5 760 aaPredicted RBP10.02□□□□□ -0.81
USP48-208ENST00000479177 GCC2Q8IWJ2 1684 aa10.02□□□□□ -0.81
USP48-208ENST00000479177 MAST1Q9Y2H9 1570 aa10.01□□□□□ -0.81
USP48-208ENST00000479177 ITGBL1O95965 494 aaPredicted RBP10.01□□□□□ -0.81
USP48-208ENST00000479177 COL9A1P20849 921 aa10.01□□□□□ -0.81
USP48-208ENST00000479177 BCAMP50895 628 aa10.01□□□□□ -0.81
USP48-208ENST00000479177 EFCAB2Q5VUJ9 269 aa10.01□□□□□ -0.81
USP48-208ENST00000479177 ADGRL2O95490 1459 aa10.01□□□□□ -0.81
USP48-208ENST00000479177 NEO1Q92859 1461 aa10.01□□□□□ -0.81
USP48-208ENST00000479177 ADGRL1O94910 1474 aa10□□□□□ -0.81
USP48-208ENST00000479177 ITGAEP38570 1179 aa10□□□□□ -0.81
USP48-208ENST00000479177 DDX12PQ92771 950 aa10□□□□□ -0.81
USP48-208ENST00000479177 ARHGEF1Q92888 912 aaKnown RBP10□□□□□ -0.81
USP48-208ENST00000479177 HFM1A2PYH4 1435 aa9.99□□□□□ -0.81
USP48-208ENST00000479177 C9orf84Q5VXU9 1444 aa9.99□□□□□ -0.81
USP48-208ENST00000479177 FAM69CQ0P6D2 419 aa9.99□□□□□ -0.81
USP48-208ENST00000479177 RABGEF1Q9UJ41 708 aa9.99□□□□□ -0.81
USP48-208ENST00000479177 PCDHGA10Q9Y5H3 936 aa9.99□□□□□ -0.81
USP48-208ENST00000479177 ROCK1Q13464 1354 aa9.99□□□□□ -0.81
USP48-208ENST00000479177 TSPOAP1O95153 1857 aa9.98□□□□□ -0.81
USP48-208ENST00000479177 TRAPPC8Q9Y2L5 1435 aa9.98□□□□□ -0.81
USP48-208ENST00000479177 TEX14Q8IWB6 1497 aa9.98□□□□□ -0.81
USP48-208ENST00000479177 ZFYVE16Q7Z3T8 1539 aa9.97□□□□□ -0.81
USP48-208ENST00000479177 PLXNC1O60486 1568 aa9.97□□□□□ -0.81
USP48-208ENST00000479177 INO80Q9ULG1 1556 aaPredicted RBP9.97□□□□□ -0.81
USP48-208ENST00000479177 PPP1R3GB7ZBB8 358 aa9.97□□□□□ -0.81
USP48-208ENST00000479177 SLC24A1O60721 1099 aa9.97□□□□□ -0.81
USP48-208ENST00000479177 Q6ZNB5 142 aa9.97□□□□□ -0.81
USP48-208ENST00000479177 ANKK1Q8NFD2 765 aa9.97□□□□□ -0.81
USP48-208ENST00000479177 NAIPQ13075 1403 aa9.97□□□□□ -0.81
USP48-208ENST00000479177 POGZQ7Z3K3 1410 aa9.97□□□□□ -0.81
USP48-208ENST00000479177 KDM5CP41229 1560 aa9.97□□□□□ -0.81
USP48-208ENST00000479177 HNRNPMP52272 730 aaKnown RBP eCLIP9.96□□□□□ -0.82
USP48-208ENST00000479177 SCAPERQ9BY12 1400 aa9.96□□□□□ -0.82
USP48-208ENST00000479177 SETD5Q9C0A6 1442 aa9.96□□□□□ -0.82
USP48-208ENST00000479177 SPDYE16A6NNV3 312 aaPredicted RBP9.95□□□□□ -0.82
USP48-208ENST00000479177 MLLT3P42568 568 aaPredicted RBP9.95□□□□□ -0.82
USP48-208ENST00000479177 PRIM1P49642 420 aaKnown RBP9.95□□□□□ -0.82
USP48-208ENST00000479177 NCOA1Q15788 1441 aa9.95□□□□□ -0.82
USP48-208ENST00000479177 ZNF518AQ6AHZ1 1483 aa9.95□□□□□ -0.82
USP48-208ENST00000479177 FRMPD1Q5SYB0 1578 aa9.95□□□□□ -0.82
USP48-208ENST00000479177 RICTORQ6R327 1708 aa9.95□□□□□ -0.82
USP48-208ENST00000479177 KDM6BO15054 1643 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 ATP7AQ04656 1500 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 ANKRD30AQ9BXX3 1397 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 RAB3GAP2Q9H2M9 1393 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 SOWAHBA6NEL2 793 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 GRXCR2A6NFK2 248 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 LCE2BO14633 110 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 SEMA3EO15041 775 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 RSPH4AQ5TD94 716 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 WBP1LQ9NX94 342 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 CHIC2Q9UKJ5 165 aa9.94□□□□□ -0.82
USP48-208ENST00000479177 DENND4BO75064 1496 aaPredicted RBP9.93□□□□□ -0.82
USP48-208ENST00000479177 HECW2Q9P2P5 1572 aa9.92□□□□□ -0.82
USP48-208ENST00000479177 RTEL1-TNFRSF6BF6WH68 1400 aa9.92□□□□□ -0.82
USP48-208ENST00000479177 PHF14O94880 888 aa9.92□□□□□ -0.82
USP48-208ENST00000479177 ZFRQ96KR1 1074 aaKnown RBP9.92□□□□□ -0.82
USP48-208ENST00000479177 KIAA1468Q9P260 1216 aa9.92□□□□□ -0.82
USP48-208ENST00000479177 KIDINS220Q9ULH0 1771 aa9.92□□□□□ -0.82
USP48-208ENST00000479177 ZMYM4Q5VZL5 1548 aa9.92□□□□□ -0.82
USP48-208ENST00000479177 KIF15Q9NS87 1388 aa9.91□□□□□ -0.82
USP48-208ENST00000479177 TSPY4P0CV99 314 aa9.91□□□□□ -0.82
USP48-208ENST00000479177 TSPY10P0CW01 314 aa9.91□□□□□ -0.82
USP48-208ENST00000479177 NBR1Q14596 966 aa9.91□□□□□ -0.82
USP48-208ENST00000479177 RBM33Q96EV2 1170 aaKnown RBP9.91□□□□□ -0.82
USP48-208ENST00000479177 RRP7BPQ9NSQ0 103 aa9.91□□□□□ -0.82
USP48-208ENST00000479177 SPAG9O60271 1321 aaKnown RBP9.9□□□□□ -0.82
USP48-208ENST00000479177 DUOX2Q9NRD8 1548 aa9.9□□□□□ -0.82
USP48-208ENST00000479177 MLH3Q9UHC1 1453 aa9.9□□□□□ -0.83
USP48-208ENST00000479177 ABCA6Q8N139 1617 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms