RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 PUS7Q96PZ0 661 aaKnown RBP23.52■■□□□ 1.36
CCM2-209ENST00000477605 MLH3Q9UHC1 1453 aa23.52■■□□□ 1.36
CCM2-209ENST00000477605 C14orf93Q9H972 538 aaKnown RBP23.52■■□□□ 1.35
CCM2-209ENST00000477605 NOS1P29475 1434 aa23.51■■□□□ 1.35
CCM2-209ENST00000477605 MROH2AA6NES4 1674 aa23.5■■□□□ 1.35
CCM2-209ENST00000477605 FAM161AQ3B820 660 aa23.5■■□□□ 1.35
CCM2-209ENST00000477605 PDE3AQ14432 1141 aa23.49■■□□□ 1.35
CCM2-209ENST00000477605 DIP2CQ9Y2E4 1556 aa23.48■■□□□ 1.35
CCM2-209ENST00000477605 NCBP3Q53F19 620 aaKnown RBP23.47■■□□□ 1.35
CCM2-209ENST00000477605 SPINK5Q9NQ38 1064 aaPredicted RBP23.47■■□□□ 1.35
CCM2-209ENST00000477605 CGNL1Q0VF96 1302 aa23.47■■□□□ 1.35
CCM2-209ENST00000477605 PTPRMP28827 1452 aa23.47■■□□□ 1.35
CCM2-209ENST00000477605 NPATQ14207 1427 aa23.45■■□□□ 1.35
CCM2-209ENST00000477605 AAMPQ13685 434 aa23.45■■□□□ 1.34
CCM2-209ENST00000477605 MORC1Q86VD1 984 aa23.45■■□□□ 1.34
CCM2-209ENST00000477605 ADGRB1O14514 1584 aa23.44■■□□□ 1.34
CCM2-209ENST00000477605 USP32Q8NFA0 1604 aa23.44■■□□□ 1.34
CCM2-209ENST00000477605 NSD3Q9BZ95 1437 aa23.44■■□□□ 1.34
CCM2-209ENST00000477605 MLECQ14165 292 aa23.44■■□□□ 1.34
CCM2-209ENST00000477605 WWC1Q8IX03 1113 aa23.44■■□□□ 1.34
CCM2-209ENST00000477605 RUNDC1Q96C34 613 aa23.42■■□□□ 1.34
CCM2-209ENST00000477605 PPLO60437 1756 aa23.42■■□□□ 1.34
CCM2-209ENST00000477605 REREQ9P2R6 1566 aa23.41■■□□□ 1.34
CCM2-209ENST00000477605 C8orf34Q49A92 452 aa23.41■■□□□ 1.34
CCM2-209ENST00000477605 ZC3H13Q5T200 1668 aaKnown RBP23.41■■□□□ 1.34
CCM2-209ENST00000477605 BCAR3O75815 825 aa23.4■■□□□ 1.34
CCM2-209ENST00000477605 SKAP1Q86WV1 359 aa23.4■■□□□ 1.34
CCM2-209ENST00000477605 RIMS1Q86UR5 1692 aaKnown RBP23.4■■□□□ 1.34
CCM2-209ENST00000477605 NSD2O96028 1365 aa23.39■■□□□ 1.34
CCM2-209ENST00000477605 CHGAP10645 457 aaKnown RBP23.39■■□□□ 1.34
CCM2-209ENST00000477605 WDR63Q8IWG1 891 aa23.39■■□□□ 1.34
CCM2-209ENST00000477605 PHF23Q9BUL5 403 aaPredicted RBP23.39■■□□□ 1.34
CCM2-209ENST00000477605 TRAK1Q9UPV9 953 aa23.39■■□□□ 1.34
CCM2-209ENST00000477605 CCDC27Q2M243 656 aa23.39■■□□□ 1.33
CCM2-209ENST00000477605 NEFMP07197 916 aa23.38■■□□□ 1.33
CCM2-209ENST00000477605 QRICH2Q9H0J4 1663 aa23.38■■□□□ 1.33
CCM2-209ENST00000477605 CFAP53Q96M91 514 aa23.37■■□□□ 1.33
CCM2-209ENST00000477605 ABCC3O15438 1527 aa23.36■■□□□ 1.33
CCM2-209ENST00000477605 DMRT2Q9Y5R5 561 aa23.36■■□□□ 1.33
CCM2-209ENST00000477605 IQSEC2Q5JU85 1478 aa23.36■■□□□ 1.33
CCM2-209ENST00000477605 SLC12A5Q9H2X9 1139 aa23.36■■□□□ 1.33
CCM2-209ENST00000477605 SHPRHQ149N8 1683 aa23.35■■□□□ 1.33
CCM2-209ENST00000477605 LAS1LQ9Y4W2 734 aaKnown RBP23.35■■□□□ 1.33
CCM2-209ENST00000477605 FER1L4A9Z1Z3 1794 aa23.34■■□□□ 1.33
CCM2-209ENST00000477605 AGLP35573 1532 aa23.34■■□□□ 1.33
CCM2-209ENST00000477605 EVC2Q86UK5 1308 aa23.34■■□□□ 1.33
CCM2-209ENST00000477605 VGFO15240 615 aaPredicted RBP23.34■■□□□ 1.33
CCM2-209ENST00000477605 DAXXQ9UER7 740 aaPredicted RBP23.34■■□□□ 1.33
CCM2-209ENST00000477605 MAPK8IP3Q9UPT6 1336 aa23.33■■□□□ 1.33
CCM2-209ENST00000477605 CLUAP1Q96AJ1 413 aa23.33■■□□□ 1.33
CCM2-209ENST00000477605 GGT6Q6P531 493 aa23.32■■□□□ 1.32
CCM2-209ENST00000477605 ANKRD36BQ8N2N9 1353 aa23.32■■□□□ 1.32
CCM2-209ENST00000477605 TCP11L2Q8N4U5 519 aa23.31■■□□□ 1.32
CCM2-209ENST00000477605 CANXP27824 592 aaKnown RBP23.31■■□□□ 1.32
CCM2-209ENST00000477605 ARHGAP31Q2M1Z3 1444 aa23.31■■□□□ 1.32
CCM2-209ENST00000477605 ZMYM3Q14202 1370 aa23.3■■□□□ 1.32
CCM2-209ENST00000477605 ZFYVE9O95405 1425 aa23.29■■□□□ 1.32
CCM2-209ENST00000477605 RARSP54136 660 aaKnown RBP23.29■■□□□ 1.32
CCM2-209ENST00000477605 PIK3C2BO00750 1634 aa23.29■■□□□ 1.32
CCM2-209ENST00000477605 RGS3P49796 1198 aa23.29■■□□□ 1.32
CCM2-209ENST00000477605 IGHDP01880 384 aa23.28■■□□□ 1.32
CCM2-209ENST00000477605 MTHFSP49914 203 aa23.28■■□□□ 1.32
CCM2-209ENST00000477605 TMEM132EQ6IEE7 984 aa23.28■■□□□ 1.32
CCM2-209ENST00000477605 PLPPR3Q6T4P5 718 aa23.28■■□□□ 1.32
CCM2-209ENST00000477605 PMFBP1Q8TBY8 1022 aa23.28■■□□□ 1.32
CCM2-209ENST00000477605 CAMSAP1Q5T5Y3 1602 aa23.27■■□□□ 1.32
CCM2-209ENST00000477605 MYH16Q9H6N6 1097 aa23.26■■□□□ 1.31
CCM2-209ENST00000477605 NEXMIFQ5QGS0 1516 aa23.26■■□□□ 1.31
CCM2-209ENST00000477605 CT47B1P0C2W7 299 aaPredicted RBP23.25■■□□□ 1.31
CCM2-209ENST00000477605 COG6Q9Y2V7 657 aa23.24■■□□□ 1.31
CCM2-209ENST00000477605 TULP4Q9NRJ4 1543 aa23.24■■□□□ 1.31
CCM2-209ENST00000477605 PANK1Q8TE04 598 aa23.23■■□□□ 1.31
CCM2-209ENST00000477605 TNNT2P45379 298 aaPredicted RBP23.23■■□□□ 1.31
CCM2-209ENST00000477605 SLC52A1Q9NWF4 448 aa23.22■■□□□ 1.31
CCM2-209ENST00000477605 ARHGEF28Q8N1W1 1705 aaKnown RBP23.22■■□□□ 1.31
CCM2-209ENST00000477605 CEBPAP49715 358 aaPredicted RBP23.21■■□□□ 1.31
CCM2-209ENST00000477605 NFKBIBQ15653 356 aa23.2■■□□□ 1.3
CCM2-209ENST00000477605 NEUROD2Q15784 382 aa23.2■■□□□ 1.3
CCM2-209ENST00000477605 RRP7AQ9Y3A4 280 aaKnown RBP23.2■■□□□ 1.3
CCM2-209ENST00000477605 LMTK3Q96Q04 1460 aa23.2■■□□□ 1.3
CCM2-209ENST00000477605 FRAT1Q92837 279 aaPredicted RBP23.19■■□□□ 1.3
CCM2-209ENST00000477605 ABCC11Q96J66 1382 aa23.19■■□□□ 1.3
CCM2-209ENST00000477605 ADGRB2O60241 1585 aa23.18■■□□□ 1.3
CCM2-209ENST00000477605 ESF1Q9H501 851 aaKnown RBP23.17■■□□□ 1.3
CCM2-209ENST00000477605 MED14O60244 1454 aa23.16■■□□□ 1.3
CCM2-209ENST00000477605 U2AF1L5P0DN76 240 aaPredicted RBP23.16■■□□□ 1.3
CCM2-209ENST00000477605 U2AF1Q01081 240 aaKnown RBP eCLIP23.16■■□□□ 1.3
CCM2-209ENST00000477605 RWDD1Q9H446 243 aaPredicted RBP23.16■■□□□ 1.3
CCM2-209ENST00000477605 ATAD2Q6PL18 1390 aa23.16■■□□□ 1.3
CCM2-209ENST00000477605 VIRMAQ69YN4 1812 aaKnown RBP23.14■■□□□ 1.3
CCM2-209ENST00000477605 SLC4A3P48751 1232 aa23.14■■□□□ 1.29
CCM2-209ENST00000477605 USP19O94966 1318 aa23.14■■□□□ 1.29
CCM2-209ENST00000477605 IDI1Q13907 227 aa23.13■■□□□ 1.29
CCM2-209ENST00000477605 C3P01024 1663 aa23.13■■□□□ 1.29
CCM2-209ENST00000477605 CABP2Q9NPB3 220 aa23.13■■□□□ 1.29
CCM2-209ENST00000477605 IL16Q14005 1332 aa23.12■■□□□ 1.29
CCM2-209ENST00000477605 GSE1Q14687 1217 aa23.12■■□□□ 1.29
CCM2-209ENST00000477605 ZKSCAN2Q63HK3 967 aa23.12■■□□□ 1.29
CCM2-209ENST00000477605 TERF2IPQ9NYB0 399 aa23.12■■□□□ 1.29
CCM2-209ENST00000477605 A0A1W2PP64 1363 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms