RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 ABCA9Q8IUA7 1624 aa17.4■□□□□ 0.38
HLA-DMA-208ENST00000477541 PMFBP1Q8TBY8 1022 aa17.4■□□□□ 0.38
HLA-DMA-208ENST00000477541 CLUAP1Q96AJ1 413 aa17.4■□□□□ 0.38
HLA-DMA-208ENST00000477541 CENPJQ9HC77 1338 aaPredicted RBP17.4■□□□□ 0.38
HLA-DMA-208ENST00000477541 TRAPPC8Q9Y2L5 1435 aa17.39■□□□□ 0.37
HLA-DMA-208ENST00000477541 APAF1O14727 1248 aa17.39■□□□□ 0.37
HLA-DMA-208ENST00000477541 SKAP1Q86WV1 359 aa17.39■□□□□ 0.37
HLA-DMA-208ENST00000477541 SHPRHQ149N8 1683 aa17.39■□□□□ 0.37
HLA-DMA-208ENST00000477541 FRMPD1Q5SYB0 1578 aa17.39■□□□□ 0.37
HLA-DMA-208ENST00000477541 RGS3P49796 1198 aa17.38■□□□□ 0.37
HLA-DMA-208ENST00000477541 SPAG9O60271 1321 aaKnown RBP17.38■□□□□ 0.37
HLA-DMA-208ENST00000477541 FAM43AQ8N2R8 423 aa17.37■□□□□ 0.37
HLA-DMA-208ENST00000477541 ZC3H13Q5T200 1668 aaKnown RBP17.37■□□□□ 0.37
HLA-DMA-208ENST00000477541 IQSEC2Q5JU85 1478 aa17.37■□□□□ 0.37
HLA-DMA-208ENST00000477541 ATP7AQ04656 1500 aa17.36■□□□□ 0.37
HLA-DMA-208ENST00000477541 USP19O94966 1318 aa17.36■□□□□ 0.37
HLA-DMA-208ENST00000477541 NLRP1Q9C000 1473 aa17.36■□□□□ 0.37
HLA-DMA-208ENST00000477541 ARHGEF40Q8TER5 1519 aa17.36■□□□□ 0.37
HLA-DMA-208ENST00000477541 SLC4A3P48751 1232 aa17.35■□□□□ 0.37
HLA-DMA-208ENST00000477541 UPF2Q9HAU5 1272 aaKnown RBP17.35■□□□□ 0.37
HLA-DMA-208ENST00000477541 LMTK2Q8IWU2 1503 aa17.35■□□□□ 0.37
HLA-DMA-208ENST00000477541 FRAT2O75474 233 aaPredicted RBP17.34■□□□□ 0.37
HLA-DMA-208ENST00000477541 CCDC27Q2M243 656 aa17.34■□□□□ 0.37
HLA-DMA-208ENST00000477541 EFCAB6Q5THR3 1501 aa17.34■□□□□ 0.37
HLA-DMA-208ENST00000477541 WDR63Q8IWG1 891 aa17.34■□□□□ 0.37
HLA-DMA-208ENST00000477541 ANO8Q9HCE9 1232 aaPredicted RBP17.34■□□□□ 0.37
HLA-DMA-208ENST00000477541 BRPF3Q9ULD4 1205 aa17.34■□□□□ 0.37
HLA-DMA-208ENST00000477541 FANCAO15360 1455 aa17.33■□□□□ 0.37
HLA-DMA-208ENST00000477541 BCAR3O75815 825 aa17.33■□□□□ 0.37
HLA-DMA-208ENST00000477541 L1TD1Q5T7N2 865 aaKnown RBP17.33■□□□□ 0.37
HLA-DMA-208ENST00000477541 PHF23Q9BUL5 403 aaPredicted RBP17.33■□□□□ 0.37
HLA-DMA-208ENST00000477541 WWC1Q8IX03 1113 aa17.33■□□□□ 0.36
HLA-DMA-208ENST00000477541 CCDC146Q8IYE0 955 aa17.33■□□□□ 0.36
HLA-DMA-208ENST00000477541 SPINK5Q9NQ38 1064 aaPredicted RBP17.33■□□□□ 0.36
HLA-DMA-208ENST00000477541 MROH1Q8NDA8 1641 aa17.32■□□□□ 0.36
HLA-DMA-208ENST00000477541 POGZQ7Z3K3 1410 aa17.32■□□□□ 0.36
HLA-DMA-208ENST00000477541 CANXP27824 592 aaKnown RBP17.32■□□□□ 0.36
HLA-DMA-208ENST00000477541 IGHDP01880 384 aa17.31■□□□□ 0.36
HLA-DMA-208ENST00000477541 CT47B1P0C2W7 299 aaPredicted RBP17.31■□□□□ 0.36
HLA-DMA-208ENST00000477541 RUNDC1Q96C34 613 aa17.31■□□□□ 0.36
HLA-DMA-208ENST00000477541 PUS7Q96PZ0 661 aaKnown RBP17.31■□□□□ 0.36
HLA-DMA-208ENST00000477541 ADGRB3O60242 1522 aa17.3■□□□□ 0.36
HLA-DMA-208ENST00000477541 RTN4Q9NQC3 1192 aaKnown RBP17.3■□□□□ 0.36
HLA-DMA-208ENST00000477541 NSD2O96028 1365 aa17.29■□□□□ 0.36
HLA-DMA-208ENST00000477541 RSPH6AQ9H0K4 717 aa17.29■□□□□ 0.36
HLA-DMA-208ENST00000477541 DMRT2Q9Y5R5 561 aa17.28■□□□□ 0.36
HLA-DMA-208ENST00000477541 YEATS2Q9ULM3 1422 aa17.28■□□□□ 0.36
HLA-DMA-208ENST00000477541 QRICH2Q9H0J4 1663 aa17.28■□□□□ 0.36
HLA-DMA-208ENST00000477541 ADGRB2O60241 1585 aa17.27■□□□□ 0.36
HLA-DMA-208ENST00000477541 PRKCSHP14314 528 aaPredicted RBP17.27■□□□□ 0.36
HLA-DMA-208ENST00000477541 RARSP54136 660 aaKnown RBP17.27■□□□□ 0.36
HLA-DMA-208ENST00000477541 TBC1D32Q96NH3 1257 aa17.27■□□□□ 0.36
HLA-DMA-208ENST00000477541 RWDD1Q9H446 243 aaPredicted RBP17.27■□□□□ 0.36
HLA-DMA-208ENST00000477541 MROH2AA6NES4 1674 aa17.27■□□□□ 0.35
HLA-DMA-208ENST00000477541 CARD14Q9BXL6 1004 aa17.27■□□□□ 0.35
HLA-DMA-208ENST00000477541 ZNF518AQ6AHZ1 1483 aa17.26■□□□□ 0.35
HLA-DMA-208ENST00000477541 PPLO60437 1756 aa17.26■□□□□ 0.35
HLA-DMA-208ENST00000477541 RICTORQ6R327 1708 aa17.25■□□□□ 0.35
HLA-DMA-208ENST00000477541 MYH16Q9H6N6 1097 aa17.25■□□□□ 0.35
HLA-DMA-208ENST00000477541 ANTXR1Q9H6X2 564 aa17.25■□□□□ 0.35
HLA-DMA-208ENST00000477541 CFAP53Q96M91 514 aa17.24■□□□□ 0.35
HLA-DMA-208ENST00000477541 COG6Q9Y2V7 657 aa17.24■□□□□ 0.35
HLA-DMA-208ENST00000477541 NSD3Q9BZ95 1437 aa17.24■□□□□ 0.35
HLA-DMA-208ENST00000477541 PREX1Q8TCU6 1659 aa17.23■□□□□ 0.35
HLA-DMA-208ENST00000477541 MORC1Q86VD1 984 aa17.22■□□□□ 0.35
HLA-DMA-208ENST00000477541 PANK1Q8TE04 598 aa17.22■□□□□ 0.35
HLA-DMA-208ENST00000477541 STRCQ7RTU9 1775 aa17.22■□□□□ 0.35
HLA-DMA-208ENST00000477541 CFAP70Q5T0N1 1121 aa17.21■□□□□ 0.35
HLA-DMA-208ENST00000477541 PLPPR3Q6T4P5 718 aa17.21■□□□□ 0.35
HLA-DMA-208ENST00000477541 FER1L4A9Z1Z3 1794 aa17.21■□□□□ 0.35
HLA-DMA-208ENST00000477541 RPGRIP1LQ68CZ1 1315 aa17.2■□□□□ 0.34
HLA-DMA-208ENST00000477541 SIGLEC1Q9BZZ2 1709 aa17.2■□□□□ 0.34
HLA-DMA-208ENST00000477541 ADGRB1O14514 1584 aa17.2■□□□□ 0.34
HLA-DMA-208ENST00000477541 ISY1Q9ULR0 285 aaKnown RBP17.19■□□□□ 0.34
HLA-DMA-208ENST00000477541 ADGRF5Q8IZF2 1346 aa17.19■□□□□ 0.34
HLA-DMA-208ENST00000477541 TCP11L2Q8N4U5 519 aa17.18■□□□□ 0.34
HLA-DMA-208ENST00000477541 PDZRN3Q9UPQ7 1066 aa17.18■□□□□ 0.34
HLA-DMA-208ENST00000477541 SEC24BO95487 1268 aa17.18■□□□□ 0.34
HLA-DMA-208ENST00000477541 MVPQ14764 893 aaKnown RBP17.18■□□□□ 0.34
HLA-DMA-208ENST00000477541 AFAP1Q8N556 730 aa17.17■□□□□ 0.34
HLA-DMA-208ENST00000477541 CFAP74Q9C0B2 1584 aa17.17■□□□□ 0.34
HLA-DMA-208ENST00000477541 UGGT1Q9NYU2 1555 aa17.17■□□□□ 0.34
HLA-DMA-208ENST00000477541 ZKSCAN2Q63HK3 967 aa17.16■□□□□ 0.34
HLA-DMA-208ENST00000477541 PCDHB15Q9Y5E8 787 aa17.16■□□□□ 0.34
HLA-DMA-208ENST00000477541 ABCC11Q96J66 1382 aa17.16■□□□□ 0.34
HLA-DMA-208ENST00000477541 KIDINS220Q9ULH0 1771 aa17.16■□□□□ 0.34
HLA-DMA-208ENST00000477541 HDAC1Q13547 482 aaPredicted RBP17.16■□□□□ 0.34
HLA-DMA-208ENST00000477541 TBC1D2Q9BYX2 928 aa17.16■□□□□ 0.34
HLA-DMA-208ENST00000477541 NOS1P29475 1434 aa17.15■□□□□ 0.34
HLA-DMA-208ENST00000477541 ANKRD36BQ8N2N9 1353 aa17.15■□□□□ 0.34
HLA-DMA-208ENST00000477541 IL16Q14005 1332 aa17.15■□□□□ 0.34
HLA-DMA-208ENST00000477541 KIF3BO15066 747 aa17.15■□□□□ 0.34
HLA-DMA-208ENST00000477541 C14orf93Q9H972 538 aaKnown RBP17.15■□□□□ 0.34
HLA-DMA-208ENST00000477541 CHMP5Q9NZZ3 219 aa17.15■□□□□ 0.34
HLA-DMA-208ENST00000477541 POGKQ9P215 609 aa17.15■□□□□ 0.34
HLA-DMA-208ENST00000477541 ANKRD26Q9UPS8 1709 aa17.14■□□□□ 0.33
HLA-DMA-208ENST00000477541 LTBP4Q8N2S1 1624 aa17.14■□□□□ 0.33
HLA-DMA-208ENST00000477541 ARHGEF28Q8N1W1 1705 aaKnown RBP17.13■□□□□ 0.33
HLA-DMA-208ENST00000477541 FSD2A1L4K1 749 aa17.13■□□□□ 0.33
HLA-DMA-208ENST00000477541 DZIP1LQ8IYY4 767 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms