RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 CCDC180Q9P1Z9 1646 aa8.16□□□□□ -1.1
PTCD3-212ENST00000477520 SALL2Q9Y467 1007 aaPredicted RBP8.16□□□□□ -1.1
PTCD3-212ENST00000477520 WNT7AO00755 349 aa8.15□□□□□ -1.1
PTCD3-212ENST00000477520 GPR37O15354 613 aa8.15□□□□□ -1.1
PTCD3-212ENST00000477520 AMER1Q5JTC6 1135 aaPredicted RBP8.15□□□□□ -1.1
PTCD3-212ENST00000477520 J3QL48 77 aa8.14□□□□□ -1.11
PTCD3-212ENST00000477520 GNPATO15228 680 aa8.14□□□□□ -1.11
PTCD3-212ENST00000477520 ZBTB24O43167 697 aaPredicted RBP8.14□□□□□ -1.11
PTCD3-212ENST00000477520 MSS51Q4VC12 460 aa8.14□□□□□ -1.11
PTCD3-212ENST00000477520 SNIP1Q8TAD8 396 aaKnown RBP8.14□□□□□ -1.11
PTCD3-212ENST00000477520 INSM1Q01101 510 aaPredicted RBP8.13□□□□□ -1.11
PTCD3-212ENST00000477520 MRGPRX2Q96LB1 330 aa8.13□□□□□ -1.11
PTCD3-212ENST00000477520 TERTO14746 1132 aaKnown RBP8.12□□□□□ -1.11
PTCD3-212ENST00000477520 TRIM32Q13049 653 aa8.12□□□□□ -1.11
PTCD3-212ENST00000477520 HPS1Q92902 700 aa8.12□□□□□ -1.11
PTCD3-212ENST00000477520 TRIM47Q96LD4 638 aa8.12□□□□□ -1.11
PTCD3-212ENST00000477520 TESPA1A2RU30 521 aaPredicted RBP8.1□□□□□ -1.11
PTCD3-212ENST00000477520 MMP16P51512 607 aa8.1□□□□□ -1.11
PTCD3-212ENST00000477520 P3H3Q8IVL6 736 aa8.09□□□□□ -1.11
PTCD3-212ENST00000477520 SULF1Q8IWU6 871 aa8.09□□□□□ -1.11
PTCD3-212ENST00000477520 SKOR1P84550 965 aa8.07□□□□□ -1.12
PTCD3-212ENST00000477520 SENP2Q9HC62 589 aa8.07□□□□□ -1.12
PTCD3-212ENST00000477520 DXOO77932 396 aaKnown RBP8.05□□□□□ -1.12
PTCD3-212ENST00000477520 Q3C1V9 767 aa8.04□□□□□ -1.12
PTCD3-212ENST00000477520 GRIPAP1Q4V328 841 aa8.04□□□□□ -1.12
PTCD3-212ENST00000477520 RC3H1Q5TC82 1133 aaKnown RBP8.04□□□□□ -1.12
PTCD3-212ENST00000477520 HLA-CQ95604 372 aa8.04□□□□□ -1.12
PTCD3-212ENST00000477520 USB1Q9BQ65 265 aaKnown RBP8.03□□□□□ -1.12
PTCD3-212ENST00000477520 REPIN1Q9BWE0 567 aaKnown RBP8.03□□□□□ -1.12
PTCD3-212ENST00000477520 CD46P15529 392 aa8.02□□□□□ -1.13
PTCD3-212ENST00000477520 LORP23490 312 aaPredicted RBP8.02□□□□□ -1.13
PTCD3-212ENST00000477520 CCDC24Q8N4L8 307 aa8.02□□□□□ -1.13
PTCD3-212ENST00000477520 KIFC2Q96AC6 838 aa8.02□□□□□ -1.13
PTCD3-212ENST00000477520 GMPRP36959 345 aa8□□□□□ -1.13
PTCD3-212ENST00000477520 SMYD5Q6GMV2 418 aa8□□□□□ -1.13
PTCD3-212ENST00000477520 KDM4AO75164 1064 aa7.99□□□□□ -1.13
PTCD3-212ENST00000477520 ALDH1A1P00352 501 aa7.99□□□□□ -1.13
PTCD3-212ENST00000477520 WNT7BP56706 349 aa7.99□□□□□ -1.13
PTCD3-212ENST00000477520 BMP1P13497 986 aa7.98□□□□□ -1.13
PTCD3-212ENST00000477520 TRIM46Q7Z4K8 759 aa7.98□□□□□ -1.13
PTCD3-212ENST00000477520 NXF1Q9UBU9 619 aaKnown RBP7.98□□□□□ -1.13
PTCD3-212ENST00000477520 SIAH2O43255 324 aa7.97□□□□□ -1.13
PTCD3-212ENST00000477520 VEGFBP49765 207 aa7.97□□□□□ -1.13
PTCD3-212ENST00000477520 GUCA2AQ02747 115 aa7.97□□□□□ -1.13
PTCD3-212ENST00000477520 PTCRAQ6ISU1 281 aaPredicted RBP7.96□□□□□ -1.14
PTCD3-212ENST00000477520 SLC16A10Q8TF71 515 aa7.96□□□□□ -1.14
PTCD3-212ENST00000477520 SYMPKQ92797 1274 aaKnown RBP7.96□□□□□ -1.14
PTCD3-212ENST00000477520 GPIHBP1Q8IV16 184 aa7.95□□□□□ -1.14
PTCD3-212ENST00000477520 HOXA2O43364 376 aa7.94□□□□□ -1.14
PTCD3-212ENST00000477520 ZSCAN1Q8NBB4 408 aa7.94□□□□□ -1.14
PTCD3-212ENST00000477520 ERBB4Q15303 1308 aa7.94□□□□□ -1.14
PTCD3-212ENST00000477520 LOC100996750A0A140TA64 210 aa7.93□□□□□ -1.14
PTCD3-212ENST00000477520 JUNDP17535 347 aa7.93□□□□□ -1.14
PTCD3-212ENST00000477520 KRTAP4-6Q9BYQ5 205 aa7.93□□□□□ -1.14
PTCD3-212ENST00000477520 H3BM21 787 aa7.92□□□□□ -1.14
PTCD3-212ENST00000477520 CAPN5O15484 640 aaPredicted RBP7.92□□□□□ -1.14
PTCD3-212ENST00000477520 USP46P62068 366 aa7.92□□□□□ -1.14
PTCD3-212ENST00000477520 MDM2Q00987 491 aaPredicted RBP7.92□□□□□ -1.14
PTCD3-212ENST00000477520 EHBP1Q8NDI1 1231 aa7.92□□□□□ -1.14
PTCD3-212ENST00000477520 IRF7Q92985 503 aa7.92□□□□□ -1.14
PTCD3-212ENST00000477520 FAM181BA6NEQ2 426 aa7.91□□□□□ -1.14
PTCD3-212ENST00000477520 NPAS3Q8IXF0 933 aa7.91□□□□□ -1.14
PTCD3-212ENST00000477520 NUDT12Q9BQG2 462 aa7.9□□□□□ -1.14
PTCD3-212ENST00000477520 SH3BP2P78314 561 aa7.89□□□□□ -1.15
PTCD3-212ENST00000477520 MAP2K5Q13163 448 aa7.89□□□□□ -1.15
PTCD3-212ENST00000477520 WASF2Q9Y6W5 498 aa7.89□□□□□ -1.15
PTCD3-212ENST00000477520 ZFP42Q96MM3 310 aa7.88□□□□□ -1.15
PTCD3-212ENST00000477520 IRF6O14896 467 aa7.87□□□□□ -1.15
PTCD3-212ENST00000477520 RETREG3Q86VR2 466 aa7.87□□□□□ -1.15
PTCD3-212ENST00000477520 PCDHGC3Q9UN70 934 aa7.86□□□□□ -1.15
PTCD3-212ENST00000477520 TLL2Q9Y6L7 1015 aa7.86□□□□□ -1.15
PTCD3-212ENST00000477520 SOBPA7XYQ1 873 aa7.84□□□□□ -1.15
PTCD3-212ENST00000477520 LINC01559Q495D7 138 aa7.84□□□□□ -1.15
PTCD3-212ENST00000477520 FAM217BQ9NTX9 383 aaPredicted RBP7.84□□□□□ -1.15
PTCD3-212ENST00000477520 ABCC9O60706 1549 aa7.83□□□□□ -1.16
PTCD3-212ENST00000477520 CCNYL3P0C7X3 344 aa7.83□□□□□ -1.16
PTCD3-212ENST00000477520 MS4A1P11836 297 aa7.82□□□□□ -1.16
PTCD3-212ENST00000477520 BAP1Q92560 729 aa7.82□□□□□ -1.16
PTCD3-212ENST00000477520 CCDC102AQ96A19 550 aa7.82□□□□□ -1.16
PTCD3-212ENST00000477520 UNC93B1Q9H1C4 597 aa7.82□□□□□ -1.16
PTCD3-212ENST00000477520 TTBK1Q5TCY1 1321 aaPredicted RBP7.81□□□□□ -1.16
PTCD3-212ENST00000477520 FDX1P10109 184 aa7.81□□□□□ -1.16
PTCD3-212ENST00000477520 NNTQ13423 1086 aa7.81□□□□□ -1.16
PTCD3-212ENST00000477520 MRPL14Q6P1L8 145 aaKnown RBP7.81□□□□□ -1.16
PTCD3-212ENST00000477520 PURBQ96QR8 312 aaKnown RBP7.81□□□□□ -1.16
PTCD3-212ENST00000477520 MINK1Q8N4C8 1332 aaPredicted RBP7.8□□□□□ -1.16
PTCD3-212ENST00000477520 C6orf229H3BNL8 230 aa7.8□□□□□ -1.16
PTCD3-212ENST00000477520 TIMP2P16035 220 aa7.8□□□□□ -1.16
PTCD3-212ENST00000477520 NUTM1Q86Y26 1132 aa7.8□□□□□ -1.16
PTCD3-212ENST00000477520 GPCPD1Q9NPB8 672 aa7.8□□□□□ -1.16
PTCD3-212ENST00000477520 VSIG8P0DPA2 414 aa7.79□□□□□ -1.16
PTCD3-212ENST00000477520 PTPRNQ16849 979 aa7.79□□□□□ -1.16
PTCD3-212ENST00000477520 EVA1BQ9NVM1 165 aa7.79□□□□□ -1.16
PTCD3-212ENST00000477520 ZNF511Q8NB15 262 aa7.78□□□□□ -1.16
PTCD3-212ENST00000477520 KLF16Q9BXK1 252 aaPredicted RBP7.78□□□□□ -1.16
PTCD3-212ENST00000477520 CLCN1P35523 988 aa7.77□□□□□ -1.17
PTCD3-212ENST00000477520 GSK3AP49840 483 aa7.77□□□□□ -1.17
PTCD3-212ENST00000477520 WDR4P57081 412 aaKnown RBP7.77□□□□□ -1.17
PTCD3-212ENST00000477520 KCNH2Q12809 1159 aa7.77□□□□□ -1.17
PTCD3-212ENST00000477520 SUZ12Q15022 739 aaKnown RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms