RNA–Protein interactions for RNA: ENST00000476772.5

VEGFA-211, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 1,683 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-211ENST00000476772 XRN1Q8IZH2 1706 aaKnown RBP39.63■■■■□ 3.93
VEGFA-211ENST00000476772 PUS7Q96PZ0 661 aaKnown RBP39.63■■■■□ 3.93
VEGFA-211ENST00000476772 AMOTL2Q9Y2J4 779 aa39.63■■■■□ 3.93
VEGFA-211ENST00000476772 NCKAP5LQ9HCH0 1330 aa39.63■■■■□ 3.93
VEGFA-211ENST00000476772 PIK3R4Q99570 1358 aa39.63■■■■□ 3.93
VEGFA-211ENST00000476772 PRKRIP1Q9H875 184 aaPredicted RBP39.6■■■■□ 3.93
VEGFA-211ENST00000476772 PER1O15534 1290 aaPredicted RBP39.6■■■■□ 3.93
VEGFA-211ENST00000476772 CABP2Q9NPB3 220 aa39.6■■■■□ 3.93
VEGFA-211ENST00000476772 PTCH1Q13635 1447 aa39.58■■■■□ 3.93
VEGFA-211ENST00000476772 SRPK2P78362 688 aaKnown RBP39.56■■■■□ 3.92
VEGFA-211ENST00000476772 LMTK3Q96Q04 1460 aa39.54■■■■□ 3.92
VEGFA-211ENST00000476772 CHD2O14647 1828 aaKnown RBP39.54■■■■□ 3.92
VEGFA-211ENST00000476772 CCER2I3L3R5 266 aa39.53■■■■□ 3.92
VEGFA-211ENST00000476772 CDK19Q9BWU1 502 aa39.53■■■■□ 3.92
VEGFA-211ENST00000476772 SIPA1L2Q9P2F8 1722 aaPredicted RBP39.52■■■■□ 3.92
VEGFA-211ENST00000476772 CNGB1Q14028 1251 aaPredicted RBP39.52■■■■□ 3.92
VEGFA-211ENST00000476772 TMC1Q8TDI8 760 aa39.51■■■■□ 3.92
VEGFA-211ENST00000476772 HSPA2P54652 639 aa39.51■■■■□ 3.91
VEGFA-211ENST00000476772 ATAD2Q6PL18 1390 aa39.49■■■■□ 3.91
VEGFA-211ENST00000476772 SLC12A5Q9H2X9 1139 aa39.49■■■■□ 3.91
VEGFA-211ENST00000476772 ADGRB2O60241 1585 aa39.48■■■■□ 3.91
VEGFA-211ENST00000476772 KCNA6P17658 529 aa39.48■■■■□ 3.91
VEGFA-211ENST00000476772 WASLO00401 505 aaPredicted RBP39.46■■■■□ 3.91
VEGFA-211ENST00000476772 KNSTRNQ9Y448 316 aa39.43■■■■□ 3.9
VEGFA-211ENST00000476772 NINLQ9Y2I6 1382 aa39.43■■■■□ 3.9
VEGFA-211ENST00000476772 KTN1Q86UP2 1357 aaKnown RBP39.41■■■■□ 3.9
VEGFA-211ENST00000476772 CARD14Q9BXL6 1004 aa39.39■■■■□ 3.9
VEGFA-211ENST00000476772 ANKRD36BQ8N2N9 1353 aa39.37■■■■□ 3.89
VEGFA-211ENST00000476772 CC2D1BQ5T0F9 858 aaKnown RBP39.36■■■■□ 3.89
VEGFA-211ENST00000476772 NWD1Q149M9 1564 aa39.36■■■■□ 3.89
VEGFA-211ENST00000476772 AMER1Q5JTC6 1135 aaPredicted RBP39.35■■■■□ 3.89
VEGFA-211ENST00000476772 PARD3Q8TEW0 1356 aa39.35■■■■□ 3.89
VEGFA-211ENST00000476772 RALBP1Q15311 655 aa39.35■■■■□ 3.89
VEGFA-211ENST00000476772 NSD3Q9BZ95 1437 aa39.32■■■■□ 3.89
VEGFA-211ENST00000476772 STRCQ7RTU9 1775 aa39.31■■■■□ 3.88
VEGFA-211ENST00000476772 ATP7BP35670 1465 aa39.29■■■■□ 3.88
VEGFA-211ENST00000476772 CD163L1Q9NR16 1453 aa39.29■■■■□ 3.88
VEGFA-211ENST00000476772 A0A1W2PP64 1363 aa39.29■■■■□ 3.88
VEGFA-211ENST00000476772 NPC1L1Q9UHC9 1359 aa39.29■■■■□ 3.88
VEGFA-211ENST00000476772 CABP1Q9NZU7 370 aa39.29■■■■□ 3.88
VEGFA-211ENST00000476772 CCDC184Q52MB2 194 aa39.28■■■■□ 3.88
VEGFA-211ENST00000476772 NUDT16Q96DE0 195 aaKnown RBP39.28■■■■□ 3.88
VEGFA-211ENST00000476772 YTHDC1Q96MU7 727 aaKnown RBP39.28■■■■□ 3.88
VEGFA-211ENST00000476772 USP32Q8NFA0 1604 aa39.26■■■■□ 3.88
VEGFA-211ENST00000476772 MYBBP1AQ9BQG0 1328 aaKnown RBP39.25■■■■□ 3.87
VEGFA-211ENST00000476772 PRR36Q9H6K5 1346 aa39.25■■■■□ 3.87
VEGFA-211ENST00000476772 PPIP5K1Q6PFW1 1433 aa39.25■■■■□ 3.87
VEGFA-211ENST00000476772 NALCNQ8IZF0 1738 aa39.25■■■■□ 3.87
VEGFA-211ENST00000476772 TERF2IPQ9NYB0 399 aa39.24■■■■□ 3.87
VEGFA-211ENST00000476772 TOPAZ1Q8N9V7 1692 aa39.21■■■■□ 3.87
VEGFA-211ENST00000476772 CCDC61Q9Y6R9 512 aa39.21■■■■□ 3.87
VEGFA-211ENST00000476772 MRS2Q9HD23 443 aa39.2■■■■□ 3.87
VEGFA-211ENST00000476772 HDGFL2Q7Z4V5 671 aaPredicted RBP39.19■■■■□ 3.86
VEGFA-211ENST00000476772 RBM33Q96EV2 1170 aaKnown RBP39.19■■■■□ 3.86
VEGFA-211ENST00000476772 NKTRP30414 1462 aaKnown RBP39.18■■■■□ 3.86
VEGFA-211ENST00000476772 CDC42BPGQ6DT37 1551 aa39.17■■■■□ 3.86
VEGFA-211ENST00000476772 NUTM2FA1L443 756 aa39.16■■■■□ 3.86
VEGFA-211ENST00000476772 STRCP1A6NGW2 1772 aa39.16■■■■□ 3.86
VEGFA-211ENST00000476772 FMN2Q9NZ56 1722 aa39.16■■■■□ 3.86
VEGFA-211ENST00000476772 ADGRL3Q9HAR2 1447 aa39.15■■■■□ 3.86
VEGFA-211ENST00000476772 CGNL1Q0VF96 1302 aa39.14■■■■□ 3.86
VEGFA-211ENST00000476772 CPSF1Q10570 1443 aaKnown RBP39.13■■■■□ 3.85
VEGFA-211ENST00000476772 ITSN1Q15811 1721 aa39.11■■■■□ 3.85
VEGFA-211ENST00000476772 BRD4O60885 1362 aaPredicted RBP39.11■■■■□ 3.85
VEGFA-211ENST00000476772 NLRP13Q86W25 1043 aa39.1■■■■□ 3.85
VEGFA-211ENST00000476772 AKAP12Q02952 1782 aa39.1■■■■□ 3.85
VEGFA-211ENST00000476772 PROSER2Q86WR7 435 aaPredicted RBP39.09■■■■□ 3.85
VEGFA-211ENST00000476772 RGPD8O14715 1765 aaPredicted RBP39.09■■■■□ 3.85
VEGFA-211ENST00000476772 ANKARQ7Z5J8 1434 aa39.08■■■■□ 3.85
VEGFA-211ENST00000476772 MON2Q7Z3U7 1717 aa39.07■■■■□ 3.84
VEGFA-211ENST00000476772 NSD2O96028 1365 aa39.06■■■■□ 3.84
VEGFA-211ENST00000476772 PLEKHG3A1L390 1219 aa39.04■■■■□ 3.84
VEGFA-211ENST00000476772 PPP2R1AP30153 589 aa39.04■■■■□ 3.84
VEGFA-211ENST00000476772 C14orf37Q86TY3 774 aa39.03■■■■□ 3.84
VEGFA-211ENST00000476772 KIF20BQ96Q89 1820 aa39.02■■■■□ 3.84
VEGFA-211ENST00000476772 EDC4Q6P2E9 1401 aaKnown RBP39■■■■□ 3.83
VEGFA-211ENST00000476772 MORC1Q86VD1 984 aa39■■■■□ 3.83
VEGFA-211ENST00000476772 ANKRD26Q9UPS8 1709 aa38.99■■■■□ 3.83
VEGFA-211ENST00000476772 ACEP12821 1306 aa38.99■■■■□ 3.83
VEGFA-211ENST00000476772 ZNF692Q9BU19 519 aaPredicted RBP38.97■■■■□ 3.83
VEGFA-211ENST00000476772 FYB1O15117 783 aa38.97■■■■□ 3.83
VEGFA-211ENST00000476772 FAM9BQ8IZU0 186 aa38.97■■■■□ 3.83
VEGFA-211ENST00000476772 TMEM94Q12767 1356 aa38.96■■■■□ 3.83
VEGFA-211ENST00000476772 SUGP2Q8IX01 1082 aaKnown RBP eCLIP38.95■■■■□ 3.83
VEGFA-211ENST00000476772 PMFBP1Q8TBY8 1022 aa38.94■■■■□ 3.82
VEGFA-211ENST00000476772 GGNBP2Q9H3C7 697 aa38.94■■■■□ 3.82
VEGFA-211ENST00000476772 NRKQ7Z2Y5 1582 aa38.94■■■■□ 3.82
VEGFA-211ENST00000476772 PNISRQ8TF01 805 aaKnown RBP38.92■■■■□ 3.82
VEGFA-211ENST00000476772 POLR3AO14802 1390 aaPredicted RBP38.91■■■■□ 3.82
VEGFA-211ENST00000476772 NCOA3Q9Y6Q9 1424 aa38.91■■■■□ 3.82
VEGFA-211ENST00000476772 USP6P35125 1406 aa38.9■■■■□ 3.82
VEGFA-211ENST00000476772 ZNF335Q9H4Z2 1342 aaPredicted RBP38.89■■■■□ 3.82
VEGFA-211ENST00000476772 TNNT2P45379 298 aaPredicted RBP38.88■■■■□ 3.81
VEGFA-211ENST00000476772 C19orf44Q9H6X5 657 aa38.88■■■■□ 3.81
VEGFA-211ENST00000476772 NGDNQ8NEJ9 315 aaKnown RBP38.87■■■■□ 3.81
VEGFA-211ENST00000476772 DMRT2Q9Y5R5 561 aa38.86■■■■□ 3.81
VEGFA-211ENST00000476772 XIRP1Q702N8 1843 aaKnown RBP38.85■■■■□ 3.81
VEGFA-211ENST00000476772 NME9Q86XW9 330 aa38.84■■■■□ 3.81
VEGFA-211ENST00000476772 SSH2Q76I76 1423 aa38.82■■■■□ 3.81
VEGFA-211ENST00000476772 TTC21BQ7Z4L5 1316 aa38.82■■■■□ 3.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms