RNA–Protein interactions for RNA: ENST00000475255.5

SEMA4D-217, Transcript of semaphorin 4D, humanhuman

TSL 1 (best)

Gene SEMA4D, Length 3,053 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-217ENST00000475255 U2AF1L5P0DN76 240 aaPredicted RBP17.42■□□□□ 0.38
SEMA4D-217ENST00000475255 U2AF1Q01081 240 aaKnown RBP eCLIP17.42■□□□□ 0.38
SEMA4D-217ENST00000475255 NSD3Q9BZ95 1437 aa17.42■□□□□ 0.38
SEMA4D-217ENST00000475255 C22orf23Q9BZE7 217 aa17.42■□□□□ 0.38
SEMA4D-217ENST00000475255 FOXD4L1Q9NU39 408 aa17.41■□□□□ 0.38
SEMA4D-217ENST00000475255 NPC1L1Q9UHC9 1359 aa17.41■□□□□ 0.38
SEMA4D-217ENST00000475255 SAFB2Q14151 953 aaKnown RBP eCLIP17.4■□□□□ 0.38
SEMA4D-217ENST00000475255 TRAK2O60296 914 aa17.4■□□□□ 0.38
SEMA4D-217ENST00000475255 ITPRIPQ8IWB1 547 aa17.39■□□□□ 0.38
SEMA4D-217ENST00000475255 VIRMAQ69YN4 1812 aaKnown RBP17.39■□□□□ 0.37
SEMA4D-217ENST00000475255 CLTCL1P53675 1640 aa17.39■□□□□ 0.37
SEMA4D-217ENST00000475255 MVPQ14764 893 aaKnown RBP17.39■□□□□ 0.37
SEMA4D-217ENST00000475255 SMC4Q9NTJ3 1288 aa17.38■□□□□ 0.37
SEMA4D-217ENST00000475255 U2SURPO15042 1029 aaKnown RBP17.37■□□□□ 0.37
SEMA4D-217ENST00000475255 EXOSC9Q06265 439 aaKnown RBP17.37■□□□□ 0.37
SEMA4D-217ENST00000475255 KDM5AP29375 1690 aaKnown RBP17.37■□□□□ 0.37
SEMA4D-217ENST00000475255 POLR3AO14802 1390 aaPredicted RBP17.37■□□□□ 0.37
SEMA4D-217ENST00000475255 PLXNC1O60486 1568 aa17.37■□□□□ 0.37
SEMA4D-217ENST00000475255 DZIP1LQ8IYY4 767 aaKnown RBP17.36■□□□□ 0.37
SEMA4D-217ENST00000475255 SCAPERQ9BY12 1400 aa17.36■□□□□ 0.37
SEMA4D-217ENST00000475255 ZKSCAN2Q63HK3 967 aa17.36■□□□□ 0.37
SEMA4D-217ENST00000475255 ERCC6L2Q5T890 1561 aa17.36■□□□□ 0.37
SEMA4D-217ENST00000475255 PNNQ9H307 717 aaKnown RBP17.35■□□□□ 0.37
SEMA4D-217ENST00000475255 CEP152O94986 1710 aa17.35■□□□□ 0.37
SEMA4D-217ENST00000475255 TRIM27P14373 513 aa17.34■□□□□ 0.37
SEMA4D-217ENST00000475255 CHMP5Q9NZZ3 219 aa17.34■□□□□ 0.37
SEMA4D-217ENST00000475255 NINLQ9Y2I6 1382 aa17.34■□□□□ 0.37
SEMA4D-217ENST00000475255 FSD2A1L4K1 749 aa17.34■□□□□ 0.37
SEMA4D-217ENST00000475255 LNPKQ9C0E8 428 aa17.34■□□□□ 0.37
SEMA4D-217ENST00000475255 SSH1Q8WYL5 1049 aa17.33■□□□□ 0.37
SEMA4D-217ENST00000475255 SPHKAPQ2M3C7 1700 aa17.33■□□□□ 0.36
SEMA4D-217ENST00000475255 WDR63Q8IWG1 891 aa17.33■□□□□ 0.36
SEMA4D-217ENST00000475255 TRPM2O94759 1503 aa17.32■□□□□ 0.36
SEMA4D-217ENST00000475255 MYH16Q9H6N6 1097 aa17.32■□□□□ 0.36
SEMA4D-217ENST00000475255 HSCBQ8IWL3 235 aa17.32■□□□□ 0.36
SEMA4D-217ENST00000475255 NGEFQ8N5V2 710 aa17.32■□□□□ 0.36
SEMA4D-217ENST00000475255 PLCH2O75038 1416 aa17.31■□□□□ 0.36
SEMA4D-217ENST00000475255 PHF23Q9BUL5 403 aaPredicted RBP17.31■□□□□ 0.36
SEMA4D-217ENST00000475255 NOB1Q9ULX3 412 aaKnown RBP17.31■□□□□ 0.36
SEMA4D-217ENST00000475255 CFAP53Q96M91 514 aa17.31■□□□□ 0.36
SEMA4D-217ENST00000475255 TMEM57Q8N5G2 664 aa17.3■□□□□ 0.36
SEMA4D-217ENST00000475255 PTPRTO14522 1441 aa17.3■□□□□ 0.36
SEMA4D-217ENST00000475255 CABP2Q9NPB3 220 aa17.29■□□□□ 0.36
SEMA4D-217ENST00000475255 RTEL1-TNFRSF6BF6WH68 1400 aa17.29■□□□□ 0.36
SEMA4D-217ENST00000475255 VSIG10Q8N0Z9 540 aa17.29■□□□□ 0.36
SEMA4D-217ENST00000475255 C1orf115Q9H7X2 142 aa17.29■□□□□ 0.36
SEMA4D-217ENST00000475255 ERBB4Q15303 1308 aa17.28■□□□□ 0.36
SEMA4D-217ENST00000475255 GAS2L3Q86XJ1 694 aa17.28■□□□□ 0.36
SEMA4D-217ENST00000475255 GGNBP2Q9H3C7 697 aa17.28■□□□□ 0.36
SEMA4D-217ENST00000475255 NOS1P29475 1434 aa17.28■□□□□ 0.36
SEMA4D-217ENST00000475255 GRPEL1Q9HAV7 217 aa17.28■□□□□ 0.36
SEMA4D-217ENST00000475255 CFAP65Q6ZU64 1925 aaKnown RBP17.28■□□□□ 0.36
SEMA4D-217ENST00000475255 KANK1Q14678 1352 aa17.27■□□□□ 0.36
SEMA4D-217ENST00000475255 RBM42Q9BTD8 480 aaKnown RBP17.27■□□□□ 0.36
SEMA4D-217ENST00000475255 ABCA6Q8N139 1617 aa17.27■□□□□ 0.35
SEMA4D-217ENST00000475255 CD2BP2O95400 341 aaKnown RBP17.27■□□□□ 0.35
SEMA4D-217ENST00000475255 ZNF692Q9BU19 519 aaPredicted RBP17.27■□□□□ 0.35
SEMA4D-217ENST00000475255 TNPO1Q92973 898 aaKnown RBP17.26■□□□□ 0.35
SEMA4D-217ENST00000475255 SHPRHQ149N8 1683 aa17.26■□□□□ 0.35
SEMA4D-217ENST00000475255 HSP90AB1P08238 724 aaKnown RBP17.26■□□□□ 0.35
SEMA4D-217ENST00000475255 IQSEC2Q5JU85 1478 aa17.25■□□□□ 0.35
SEMA4D-217ENST00000475255 HSP90AA1P07900 732 aaKnown RBP17.25■□□□□ 0.35
SEMA4D-217ENST00000475255 ATF7IPQ6VMQ6 1270 aa17.25■□□□□ 0.35
SEMA4D-217ENST00000475255 FBLN1P23142 703 aa17.24■□□□□ 0.35
SEMA4D-217ENST00000475255 STAC3Q96MF2 364 aa17.24■□□□□ 0.35
SEMA4D-217ENST00000475255 STK26Q9P289 416 aa17.24■□□□□ 0.35
SEMA4D-217ENST00000475255 MRE11P49959 708 aa17.24■□□□□ 0.35
SEMA4D-217ENST00000475255 ABCC1P33527 1531 aa17.24■□□□□ 0.35
SEMA4D-217ENST00000475255 CLCN1P35523 988 aa17.24■□□□□ 0.35
SEMA4D-217ENST00000475255 ELL2O00472 640 aaPredicted RBP17.23■□□□□ 0.35
SEMA4D-217ENST00000475255 TRIM35Q9UPQ4 493 aa17.23■□□□□ 0.35
SEMA4D-217ENST00000475255 TMPOP42166 694 aaKnown RBP17.23■□□□□ 0.35
SEMA4D-217ENST00000475255 GGT6Q6P531 493 aa17.23■□□□□ 0.35
SEMA4D-217ENST00000475255 DDX19BQ9UMR2 479 aa17.22■□□□□ 0.35
SEMA4D-217ENST00000475255 ZNF518AQ6AHZ1 1483 aa17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 RIPK4P57078 832 aa17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 AAMPQ13685 434 aa17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 HSP90AA2PQ14568 343 aaPredicted RBP17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 CCDC27Q2M243 656 aa17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 ANKRD45Q5TZF3 282 aa17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 ESPNB1AK53 854 aa17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 HDAC1Q13547 482 aaPredicted RBP17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 SMC5Q8IY18 1101 aa17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 THUMPD2Q9BTF0 503 aaKnown RBP17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 MAP3K4Q9Y6R4 1608 aa17.21■□□□□ 0.35
SEMA4D-217ENST00000475255 TRIM44Q96DX7 344 aaPredicted RBP17.2■□□□□ 0.34
SEMA4D-217ENST00000475255 DDX11L8A8MPP1 907 aa17.19■□□□□ 0.34
SEMA4D-217ENST00000475255 ZBTB40Q9NUA8 1239 aa17.19■□□□□ 0.34
SEMA4D-217ENST00000475255 CD109Q6YHK3 1445 aa17.19■□□□□ 0.34
SEMA4D-217ENST00000475255 ZFYVE16Q7Z3T8 1539 aa17.19■□□□□ 0.34
SEMA4D-217ENST00000475255 PLEKHG5O94827 1062 aa17.18■□□□□ 0.34
SEMA4D-217ENST00000475255 SSFA2P28290 1259 aa17.18■□□□□ 0.34
SEMA4D-217ENST00000475255 SRPK2P78362 688 aaKnown RBP17.17■□□□□ 0.34
SEMA4D-217ENST00000475255 CHD1LQ86WJ1 897 aa17.17■□□□□ 0.34
SEMA4D-217ENST00000475255 GLIPR1L2Q4G1C9 344 aa17.17■□□□□ 0.34
SEMA4D-217ENST00000475255 C14orf93Q9H972 538 aaKnown RBP17.17■□□□□ 0.34
SEMA4D-217ENST00000475255 NUCB1Q02818 461 aa17.16■□□□□ 0.34
SEMA4D-217ENST00000475255 PLEKHF1Q96S99 279 aa17.16■□□□□ 0.34
SEMA4D-217ENST00000475255 KIF2CQ99661 725 aa17.16■□□□□ 0.34
SEMA4D-217ENST00000475255 TET3O43151 1660 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms