RNA–Protein interactions for RNA: ENST00000474962.1

CLIP2-204, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 3

Gene CLIP2, Length 690 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-204ENST00000474962 ABCC11Q96J66 1382 aa17.38■□□□□ 0.37
CLIP2-204ENST00000474962 PLEKHH1Q9ULM0 1364 aa17.38■□□□□ 0.37
CLIP2-204ENST00000474962 PRAG1Q86YV5 1406 aa17.38■□□□□ 0.37
CLIP2-204ENST00000474962 SOS2Q07890 1332 aaPredicted RBP17.37■□□□□ 0.37
CLIP2-204ENST00000474962 PCGF6Q9BYE7 350 aa17.36■□□□□ 0.37
CLIP2-204ENST00000474962 PIK3C2GO75747 1445 aa17.36■□□□□ 0.37
CLIP2-204ENST00000474962 SHPRHQ149N8 1683 aa17.36■□□□□ 0.37
CLIP2-204ENST00000474962 FOXO3O43524 673 aa17.35■□□□□ 0.37
CLIP2-204ENST00000474962 ADAMTS2O95450 1211 aa17.35■□□□□ 0.37
CLIP2-204ENST00000474962 C8orf37Q96NL8 207 aa17.35■□□□□ 0.37
CLIP2-204ENST00000474962 KDM2AQ9Y2K7 1162 aa17.35■□□□□ 0.37
CLIP2-204ENST00000474962 PNPLA6Q8IY17 1366 aa17.35■□□□□ 0.37
CLIP2-204ENST00000474962 AFF2P51816 1311 aa17.34■□□□□ 0.37
CLIP2-204ENST00000474962 XPCQ01831 940 aaPredicted RBP17.34■□□□□ 0.37
CLIP2-204ENST00000474962 NHSL1Q5SYE7 1610 aa17.34■□□□□ 0.37
CLIP2-204ENST00000474962 YTHDC2Q9H6S0 1430 aaKnown RBP17.33■□□□□ 0.36
CLIP2-204ENST00000474962 HRCP23327 699 aa17.33■□□□□ 0.36
CLIP2-204ENST00000474962 RXRBP28702 533 aa17.33■□□□□ 0.36
CLIP2-204ENST00000474962 SIRT1Q96EB6 747 aa17.33■□□□□ 0.36
CLIP2-204ENST00000474962 TECPR2O15040 1411 aa17.32■□□□□ 0.36
CLIP2-204ENST00000474962 IFT172Q9UG01 1749 aa17.32■□□□□ 0.36
CLIP2-204ENST00000474962 SAFB2Q14151 953 aaKnown RBP eCLIP17.31■□□□□ 0.36
CLIP2-204ENST00000474962 PIAS4Q8N2W9 510 aaPredicted RBP17.31■□□□□ 0.36
CLIP2-204ENST00000474962 DCAF11Q8TEB1 546 aa17.31■□□□□ 0.36
CLIP2-204ENST00000474962 NGLY1Q96IV0 654 aa17.31■□□□□ 0.36
CLIP2-204ENST00000474962 QTRT2Q9H974 415 aaKnown RBP17.31■□□□□ 0.36
CLIP2-204ENST00000474962 DHX57Q6P158 1386 aaKnown RBP17.3■□□□□ 0.36
CLIP2-204ENST00000474962 PRAM1Q96QH2 718 aa17.3■□□□□ 0.36
CLIP2-204ENST00000474962 NRXN1Q9ULB1 1477 aa17.29■□□□□ 0.36
CLIP2-204ENST00000474962 NPHP3Q7Z494 1330 aa17.28■□□□□ 0.36
CLIP2-204ENST00000474962 POGKQ9P215 609 aa17.26■□□□□ 0.35
CLIP2-204ENST00000474962 TRAK1Q9UPV9 953 aa17.26■□□□□ 0.35
CLIP2-204ENST00000474962 LAMC1P11047 1609 aa17.25■□□□□ 0.35
CLIP2-204ENST00000474962 MYOM2P54296 1465 aa17.25■□□□□ 0.35
CLIP2-204ENST00000474962 CDC42BPGQ6DT37 1551 aa17.25■□□□□ 0.35
CLIP2-204ENST00000474962 KRT28Q7Z3Y7 464 aa17.24■□□□□ 0.35
CLIP2-204ENST00000474962 RBM6P78332 1123 aaKnown RBP17.23■□□□□ 0.35
CLIP2-204ENST00000474962 HIRIP3Q9BW71 556 aaPredicted RBP17.23■□□□□ 0.35
CLIP2-204ENST00000474962 USP21Q9UK80 565 aa17.23■□□□□ 0.35
CLIP2-204ENST00000474962 PXDNQ92626 1479 aa17.23■□□□□ 0.35
CLIP2-204ENST00000474962 FNBP4Q8N3X1 1017 aaPredicted RBP17.22■□□□□ 0.35
CLIP2-204ENST00000474962 UPF1Q92900 1129 aaKnown RBP eCLIP17.22■□□□□ 0.35
CLIP2-204ENST00000474962 PHF8Q9UPP1 1060 aa17.22■□□□□ 0.35
CLIP2-204ENST00000474962 KNDC1Q76NI1 1749 aa17.2■□□□□ 0.34
CLIP2-204ENST00000474962 SPATA31A3Q5VYP0 1347 aa17.2■□□□□ 0.34
CLIP2-204ENST00000474962 PLEKHG5O94827 1062 aa17.19■□□□□ 0.34
CLIP2-204ENST00000474962 PSME1Q06323 249 aa17.19■□□□□ 0.34
CLIP2-204ENST00000474962 PMFBP1Q8TBY8 1022 aa17.19■□□□□ 0.34
CLIP2-204ENST00000474962 STAC3Q96MF2 364 aa17.19■□□□□ 0.34
CLIP2-204ENST00000474962 MINK1Q8N4C8 1332 aaPredicted RBP17.19■□□□□ 0.34
CLIP2-204ENST00000474962 ADGRB1O14514 1584 aa17.17■□□□□ 0.34
CLIP2-204ENST00000474962 CABLES1Q8TDN4 633 aa17.17■□□□□ 0.34
CLIP2-204ENST00000474962 TRPC5Q9UL62 973 aaPredicted RBP17.17■□□□□ 0.34
CLIP2-204ENST00000474962 FMN2Q9NZ56 1722 aa17.16■□□□□ 0.34
CLIP2-204ENST00000474962 LMOD2Q6P5Q4 547 aa17.16■□□□□ 0.34
CLIP2-204ENST00000474962 RGPD8O14715 1765 aaPredicted RBP17.15■□□□□ 0.34
CLIP2-204ENST00000474962 CDK12Q9NYV4 1490 aaPredicted RBP17.14■□□□□ 0.33
CLIP2-204ENST00000474962 WASLO00401 505 aaPredicted RBP17.14■□□□□ 0.33
CLIP2-204ENST00000474962 DLC1Q96QB1 1528 aa17.14■□□□□ 0.33
CLIP2-204ENST00000474962 COL22A1Q8NFW1 1626 aaPredicted RBP17.14■□□□□ 0.33
CLIP2-204ENST00000474962 PRR36Q9H6K5 1346 aa17.13■□□□□ 0.33
CLIP2-204ENST00000474962 RGS12O14924 1447 aa17.13■□□□□ 0.33
CLIP2-204ENST00000474962 BCL9LQ86UU0 1499 aa17.12■□□□□ 0.33
CLIP2-204ENST00000474962 NBPF1Q3BBV0 1214 aa17.12■□□□□ 0.33
CLIP2-204ENST00000474962 HAP1P54257 671 aaPredicted RBP17.1■□□□□ 0.33
CLIP2-204ENST00000474962 GJD4Q96KN9 370 aaPredicted RBP17.1■□□□□ 0.33
CLIP2-204ENST00000474962 ATRNO75882 1429 aa17.1■□□□□ 0.33
CLIP2-204ENST00000474962 EP400Q96L91 3159 aa17.1■□□□□ 0.33
CLIP2-204ENST00000474962 UNC5CLQ8IV45 518 aa17.09■□□□□ 0.33
CLIP2-204ENST00000474962 SBNO1A3KN83 1393 aa17.09■□□□□ 0.33
CLIP2-204ENST00000474962 KIF1AQ12756 1690 aa17.08■□□□□ 0.32
CLIP2-204ENST00000474962 TNS3Q68CZ2 1445 aa17.08■□□□□ 0.32
CLIP2-204ENST00000474962 ANKARQ7Z5J8 1434 aa17.08■□□□□ 0.32
CLIP2-204ENST00000474962 FAM83GA6ND36 823 aa17.08■□□□□ 0.32
CLIP2-204ENST00000474962 NUDT16Q96DE0 195 aaKnown RBP17.08■□□□□ 0.32
CLIP2-204ENST00000474962 SIN3AQ96ST3 1273 aa17.08■□□□□ 0.32
CLIP2-204ENST00000474962 CDK19Q9BWU1 502 aa17.08■□□□□ 0.32
CLIP2-204ENST00000474962 USP32Q8NFA0 1604 aa17.07■□□□□ 0.32
CLIP2-204ENST00000474962 NGDNQ8NEJ9 315 aaKnown RBP17.07■□□□□ 0.32
CLIP2-204ENST00000474962 L3MBTL2Q969R5 705 aa17.06■□□□□ 0.32
CLIP2-204ENST00000474962 SRCAPQ6ZRS2 3230 aa17.05■□□□□ 0.32
CLIP2-204ENST00000474962 PAK3O75914 559 aaPredicted RBP17.05■□□□□ 0.32
CLIP2-204ENST00000474962 ARHGEF10O15013 1369 aa17.04■□□□□ 0.32
CLIP2-204ENST00000474962 GPRASP1Q5JY77 1395 aa17.04■□□□□ 0.32
CLIP2-204ENST00000474962 NEUROD1Q13562 356 aa17.04■□□□□ 0.32
CLIP2-204ENST00000474962 ADGRB2O60241 1585 aa17.03■□□□□ 0.32
CLIP2-204ENST00000474962 SLIT2O94813 1529 aa17.03■□□□□ 0.32
CLIP2-204ENST00000474962 EIF3AQ14152 1382 aaKnown RBP17.02■□□□□ 0.32
CLIP2-204ENST00000474962 MARF1Q9Y4F3 1742 aaKnown RBP17.01■□□□□ 0.31
CLIP2-204ENST00000474962 TULP4Q9NRJ4 1543 aa17.01■□□□□ 0.31
CLIP2-204ENST00000474962 CCER1Q8TC90 406 aaPredicted RBP17.01■□□□□ 0.31
CLIP2-204ENST00000474962 ATAD2Q6PL18 1390 aa17.01■□□□□ 0.31
CLIP2-204ENST00000474962 VPS72Q15906 364 aa17■□□□□ 0.31
CLIP2-204ENST00000474962 CCDC9Q9Y3X0 531 aaKnown RBP17■□□□□ 0.31
CLIP2-204ENST00000474962 CCDC61Q9Y6R9 512 aa17■□□□□ 0.31
CLIP2-204ENST00000474962 RALGAPBQ86X10 1494 aa16.99■□□□□ 0.31
CLIP2-204ENST00000474962 NBPF8Q3BBV2 869 aa16.99■□□□□ 0.31
CLIP2-204ENST00000474962 NUTM2GQ5VZR2 741 aa16.99■□□□□ 0.31
CLIP2-204ENST00000474962 ACEP12821 1306 aa16.98■□□□□ 0.31
CLIP2-204ENST00000474962 SEPT12Q8IYM1 358 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms