RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 CDC42BPGQ6DT37 1551 aa22.15■■□□□ 1.14
VARS-223ENST00000474643 PNPLA6Q8IY17 1366 aa22.14■■□□□ 1.14
VARS-223ENST00000474643 NUTM2FA1L443 756 aa22.14■■□□□ 1.13
VARS-223ENST00000474643 WAPLQ7Z5K2 1190 aa22.14■■□□□ 1.13
VARS-223ENST00000474643 YTHDC2Q9H6S0 1430 aaKnown RBP22.13■■□□□ 1.13
VARS-223ENST00000474643 DHX57Q6P158 1386 aaKnown RBP22.12■■□□□ 1.13
VARS-223ENST00000474643 ABCC11Q96J66 1382 aa22.12■■□□□ 1.13
VARS-223ENST00000474643 AFF2P51816 1311 aa22.12■■□□□ 1.13
VARS-223ENST00000474643 NPHP3Q7Z494 1330 aa22.12■■□□□ 1.13
VARS-223ENST00000474643 ADAMTS2O95450 1211 aa22.12■■□□□ 1.13
VARS-223ENST00000474643 TECPR2O15040 1411 aa22.12■■□□□ 1.13
VARS-223ENST00000474643 LAMC1P11047 1609 aa22.11■■□□□ 1.13
VARS-223ENST00000474643 RXRBP28702 533 aa22.11■■□□□ 1.13
VARS-223ENST00000474643 MYOM2P54296 1465 aa22.1■■□□□ 1.13
VARS-223ENST00000474643 KNDC1Q76NI1 1749 aa22.1■■□□□ 1.13
VARS-223ENST00000474643 NGLY1Q96IV0 654 aa22.09■■□□□ 1.13
VARS-223ENST00000474643 SOS2Q07890 1332 aaPredicted RBP22.08■■□□□ 1.13
VARS-223ENST00000474643 CFAP70Q5T0N1 1121 aa22.08■■□□□ 1.13
VARS-223ENST00000474643 C14orf93Q9H972 538 aaKnown RBP22.08■■□□□ 1.13
VARS-223ENST00000474643 POGKQ9P215 609 aa22.07■■□□□ 1.12
VARS-223ENST00000474643 PLEKHH1Q9ULM0 1364 aa22.07■■□□□ 1.12
VARS-223ENST00000474643 FOXO3O43524 673 aa22.06■■□□□ 1.12
VARS-223ENST00000474643 SAFB2Q14151 953 aaKnown RBP eCLIP22.06■■□□□ 1.12
VARS-223ENST00000474643 KDM2AQ9Y2K7 1162 aa22.06■■□□□ 1.12
VARS-223ENST00000474643 HRCP23327 699 aa22.05■■□□□ 1.12
VARS-223ENST00000474643 XPCQ01831 940 aaPredicted RBP22.05■■□□□ 1.12
VARS-223ENST00000474643 DCAF11Q8TEB1 546 aa22.04■■□□□ 1.12
VARS-223ENST00000474643 NRXN1Q9ULB1 1477 aa22.03■■□□□ 1.12
VARS-223ENST00000474643 TRIM26Q12899 539 aaPredicted RBP22.03■■□□□ 1.12
VARS-223ENST00000474643 PRAM1Q96QH2 718 aa22.03■■□□□ 1.12
VARS-223ENST00000474643 QTRT2Q9H974 415 aaKnown RBP22.02■■□□□ 1.12
VARS-223ENST00000474643 SIRT1Q96EB6 747 aa22.01■■□□□ 1.11
VARS-223ENST00000474643 FMN2Q9NZ56 1722 aa22■■□□□ 1.11
VARS-223ENST00000474643 KIF1AQ12756 1690 aa21.99■■□□□ 1.11
VARS-223ENST00000474643 HAP1P54257 671 aaPredicted RBP21.99■■□□□ 1.11
VARS-223ENST00000474643 USP21Q9UK80 565 aa21.99■■□□□ 1.11
VARS-223ENST00000474643 RBM6P78332 1123 aaKnown RBP21.98■■□□□ 1.11
VARS-223ENST00000474643 TRAK1Q9UPV9 953 aa21.98■■□□□ 1.11
VARS-223ENST00000474643 PXDNQ92626 1479 aa21.97■■□□□ 1.11
VARS-223ENST00000474643 STAC3Q96MF2 364 aa21.96■■□□□ 1.11
VARS-223ENST00000474643 PHF8Q9UPP1 1060 aa21.96■■□□□ 1.11
VARS-223ENST00000474643 CDK12Q9NYV4 1490 aaPredicted RBP21.96■■□□□ 1.11
VARS-223ENST00000474643 PSME1Q06323 249 aa21.95■■□□□ 1.1
VARS-223ENST00000474643 LMOD2Q6P5Q4 547 aa21.95■■□□□ 1.1
VARS-223ENST00000474643 COL22A1Q8NFW1 1626 aaPredicted RBP21.95■■□□□ 1.1
VARS-223ENST00000474643 KRT28Q7Z3Y7 464 aa21.94■■□□□ 1.1
VARS-223ENST00000474643 TRPC5Q9UL62 973 aaPredicted RBP21.94■■□□□ 1.1
VARS-223ENST00000474643 DLC1Q96QB1 1528 aa21.94■■□□□ 1.1
VARS-223ENST00000474643 PLEKHG5O94827 1062 aa21.93■■□□□ 1.1
VARS-223ENST00000474643 EIF3AQ14152 1382 aaKnown RBP21.92■■□□□ 1.1
VARS-223ENST00000474643 MINK1Q8N4C8 1332 aaPredicted RBP21.92■■□□□ 1.1
VARS-223ENST00000474643 HIRIP3Q9BW71 556 aaPredicted RBP21.92■■□□□ 1.1
VARS-223ENST00000474643 SPATA31A3Q5VYP0 1347 aa21.9■■□□□ 1.1
VARS-223ENST00000474643 ADGRB1O14514 1584 aa21.89■■□□□ 1.09
VARS-223ENST00000474643 RGS12O14924 1447 aa21.89■■□□□ 1.09
VARS-223ENST00000474643 FNBP4Q8N3X1 1017 aaPredicted RBP21.88■■□□□ 1.09
VARS-223ENST00000474643 PMFBP1Q8TBY8 1022 aa21.88■■□□□ 1.09
VARS-223ENST00000474643 UPF1Q92900 1129 aaKnown RBP eCLIP21.88■■□□□ 1.09
VARS-223ENST00000474643 ANKARQ7Z5J8 1434 aa21.88■■□□□ 1.09
VARS-223ENST00000474643 TNS3Q68CZ2 1445 aa21.87■■□□□ 1.09
VARS-223ENST00000474643 RGPD8O14715 1765 aaPredicted RBP21.86■■□□□ 1.09
VARS-223ENST00000474643 ADGRB2O60241 1585 aa21.86■■□□□ 1.09
VARS-223ENST00000474643 GPRASP1Q5JY77 1395 aa21.86■■□□□ 1.09
VARS-223ENST00000474643 ARHGEF10O15013 1369 aa21.85■■□□□ 1.09
VARS-223ENST00000474643 MARF1Q9Y4F3 1742 aaKnown RBP21.83■■□□□ 1.09
VARS-223ENST00000474643 WASLO00401 505 aaPredicted RBP21.82■■□□□ 1.08
VARS-223ENST00000474643 NGDNQ8NEJ9 315 aaKnown RBP21.82■■□□□ 1.08
VARS-223ENST00000474643 SBNO1A3KN83 1393 aa21.82■■□□□ 1.08
VARS-223ENST00000474643 ATAD2Q6PL18 1390 aa21.82■■□□□ 1.08
VARS-223ENST00000474643 ATRNO75882 1429 aa21.81■■□□□ 1.08
VARS-223ENST00000474643 TULP4Q9NRJ4 1543 aa21.8■■□□□ 1.08
VARS-223ENST00000474643 CABLES1Q8TDN4 633 aa21.8■■□□□ 1.08
VARS-223ENST00000474643 CCDC9Q9Y3X0 531 aaKnown RBP21.8■■□□□ 1.08
VARS-223ENST00000474643 USP32Q8NFA0 1604 aa21.8■■□□□ 1.08
VARS-223ENST00000474643 PAK3O75914 559 aaPredicted RBP21.79■■□□□ 1.08
VARS-223ENST00000474643 UNC5CLQ8IV45 518 aa21.78■■□□□ 1.08
VARS-223ENST00000474643 ARHGEF28Q8N1W1 1705 aaKnown RBP21.77■■□□□ 1.08
VARS-223ENST00000474643 BCL9LQ86UU0 1499 aa21.77■■□□□ 1.08
VARS-223ENST00000474643 GJD4Q96KN9 370 aaPredicted RBP21.77■■□□□ 1.08
VARS-223ENST00000474643 ITSN1Q15811 1721 aa21.74■■□□□ 1.07
VARS-223ENST00000474643 PRR36Q9H6K5 1346 aa21.74■■□□□ 1.07
VARS-223ENST00000474643 NUDT16Q96DE0 195 aaKnown RBP21.73■■□□□ 1.07
VARS-223ENST00000474643 PCGF6Q9BYE7 350 aa21.73■■□□□ 1.07
VARS-223ENST00000474643 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.72■■□□□ 1.07
VARS-223ENST00000474643 KIAA1210Q9ULL0 1709 aa21.72■■□□□ 1.07
VARS-223ENST00000474643 A0A0G2JS52 829 aa21.72■■□□□ 1.07
VARS-223ENST00000474643 MYT1Q01538 1121 aa21.72■■□□□ 1.07
VARS-223ENST00000474643 SLIT2O94813 1529 aa21.71■■□□□ 1.07
VARS-223ENST00000474643 CDK19Q9BWU1 502 aa21.71■■□□□ 1.07
VARS-223ENST00000474643 RALGAPBQ86X10 1494 aa21.7■■□□□ 1.06
VARS-223ENST00000474643 ABCA3Q99758 1704 aa21.69■■□□□ 1.06
VARS-223ENST00000474643 SRPK2P78362 688 aaKnown RBP21.69■■□□□ 1.06
VARS-223ENST00000474643 NEUROD1Q13562 356 aa21.69■■□□□ 1.06
VARS-223ENST00000474643 ATP7BP35670 1465 aa21.69■■□□□ 1.06
VARS-223ENST00000474643 NBPF1Q3BBV0 1214 aa21.68■■□□□ 1.06
VARS-223ENST00000474643 PLCH1Q4KWH8 1693 aa21.68■■□□□ 1.06
VARS-223ENST00000474643 TRPM3Q9HCF6 1732 aaPredicted RBP21.67■■□□□ 1.06
VARS-223ENST00000474643 CENPJQ9HC77 1338 aaPredicted RBP21.67■■□□□ 1.06
VARS-223ENST00000474643 VPS72Q15906 364 aa21.67■■□□□ 1.06
VARS-223ENST00000474643 NWD2Q9ULI1 1742 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms