RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 NUTM2EB1AL46 878 aaPredicted RBP29.99■■■□□ 2.39
PDLIM4-206ENST00000474421 NUTM2AQ8IVF1 878 aaPredicted RBP29.99■■■□□ 2.39
PDLIM4-206ENST00000474421 DDX17Q92841 729 aaKnown RBP29.99■■■□□ 2.39
PDLIM4-206ENST00000474421 TMEM132EQ6IEE7 984 aa29.98■■■□□ 2.39
PDLIM4-206ENST00000474421 ORAI2Q96SN7 254 aa29.98■■■□□ 2.39
PDLIM4-206ENST00000474421 C14orf93Q9H972 538 aaKnown RBP29.97■■■□□ 2.39
PDLIM4-206ENST00000474421 NRXN1Q9ULB1 1477 aa29.97■■■□□ 2.39
PDLIM4-206ENST00000474421 YTHDC2Q9H6S0 1430 aaKnown RBP29.96■■■□□ 2.39
PDLIM4-206ENST00000474421 PNPLA6Q8IY17 1366 aa29.96■■■□□ 2.39
PDLIM4-206ENST00000474421 WAPLQ7Z5K2 1190 aa29.95■■■□□ 2.39
PDLIM4-206ENST00000474421 SOS2Q07890 1332 aaPredicted RBP29.95■■■□□ 2.38
PDLIM4-206ENST00000474421 SIRT1Q96EB6 747 aa29.94■■■□□ 2.38
PDLIM4-206ENST00000474421 DHX57Q6P158 1386 aaKnown RBP29.91■■■□□ 2.38
PDLIM4-206ENST00000474421 ESCO1Q5FWF5 840 aa29.91■■■□□ 2.38
PDLIM4-206ENST00000474421 NPHP3Q7Z494 1330 aa29.9■■■□□ 2.38
PDLIM4-206ENST00000474421 CFAP70Q5T0N1 1121 aa29.88■■■□□ 2.37
PDLIM4-206ENST00000474421 PLEKHH1Q9ULM0 1364 aa29.88■■■□□ 2.37
PDLIM4-206ENST00000474421 AFF2P51816 1311 aa29.86■■■□□ 2.37
PDLIM4-206ENST00000474421 STAC3Q96MF2 364 aa29.84■■■□□ 2.37
PDLIM4-206ENST00000474421 FMN2Q9NZ56 1722 aa29.83■■■□□ 2.37
PDLIM4-206ENST00000474421 RXRBP28702 533 aa29.83■■■□□ 2.37
PDLIM4-206ENST00000474421 C8orf37Q96NL8 207 aa29.83■■■□□ 2.37
PDLIM4-206ENST00000474421 NUTM2FA1L443 756 aa29.8■■■□□ 2.36
PDLIM4-206ENST00000474421 FOXO3O43524 673 aa29.8■■■□□ 2.36
PDLIM4-206ENST00000474421 PXDNQ92626 1479 aa29.8■■■□□ 2.36
PDLIM4-206ENST00000474421 COL22A1Q8NFW1 1626 aaPredicted RBP29.79■■■□□ 2.36
PDLIM4-206ENST00000474421 DLC1Q96QB1 1528 aa29.79■■■□□ 2.36
PDLIM4-206ENST00000474421 KIF1AQ12756 1690 aa29.79■■■□□ 2.36
PDLIM4-206ENST00000474421 ADAMTS2O95450 1211 aa29.78■■■□□ 2.36
PDLIM4-206ENST00000474421 DCAF11Q8TEB1 546 aa29.78■■■□□ 2.36
PDLIM4-206ENST00000474421 NGLY1Q96IV0 654 aa29.77■■■□□ 2.36
PDLIM4-206ENST00000474421 PRAM1Q96QH2 718 aa29.77■■■□□ 2.36
PDLIM4-206ENST00000474421 CDK12Q9NYV4 1490 aaPredicted RBP29.76■■■□□ 2.35
PDLIM4-206ENST00000474421 KDM2AQ9Y2K7 1162 aa29.76■■■□□ 2.35
PDLIM4-206ENST00000474421 POGKQ9P215 609 aa29.75■■■□□ 2.35
PDLIM4-206ENST00000474421 ADGRB1O14514 1584 aa29.74■■■□□ 2.35
PDLIM4-206ENST00000474421 XPCQ01831 940 aaPredicted RBP29.72■■■□□ 2.35
PDLIM4-206ENST00000474421 QTRT2Q9H974 415 aaKnown RBP29.72■■■□□ 2.35
PDLIM4-206ENST00000474421 SAFB2Q14151 953 aaKnown RBP eCLIP29.71■■■□□ 2.35
PDLIM4-206ENST00000474421 RBM6P78332 1123 aaKnown RBP29.7■■■□□ 2.35
PDLIM4-206ENST00000474421 RGPD8O14715 1765 aaPredicted RBP29.69■■■□□ 2.34
PDLIM4-206ENST00000474421 PHF8Q9UPP1 1060 aa29.68■■■□□ 2.34
PDLIM4-206ENST00000474421 TRAK1Q9UPV9 953 aa29.68■■■□□ 2.34
PDLIM4-206ENST00000474421 ADGRB2O60241 1585 aa29.67■■■□□ 2.34
PDLIM4-206ENST00000474421 FNBP4Q8N3X1 1017 aaPredicted RBP29.66■■■□□ 2.34
PDLIM4-206ENST00000474421 USP21Q9UK80 565 aa29.66■■■□□ 2.34
PDLIM4-206ENST00000474421 ANKARQ7Z5J8 1434 aa29.65■■■□□ 2.34
PDLIM4-206ENST00000474421 PSME1Q06323 249 aa29.65■■■□□ 2.34
PDLIM4-206ENST00000474421 KRT28Q7Z3Y7 464 aa29.65■■■□□ 2.34
PDLIM4-206ENST00000474421 SPATA31A3Q5VYP0 1347 aa29.65■■■□□ 2.34
PDLIM4-206ENST00000474421 MARF1Q9Y4F3 1742 aaKnown RBP29.64■■■□□ 2.34
PDLIM4-206ENST00000474421 TRPC5Q9UL62 973 aaPredicted RBP29.63■■■□□ 2.33
PDLIM4-206ENST00000474421 EIF3AQ14152 1382 aaKnown RBP29.63■■■□□ 2.33
PDLIM4-206ENST00000474421 SBNO1A3KN83 1393 aa29.58■■■□□ 2.33
PDLIM4-206ENST00000474421 RGS12O14924 1447 aa29.58■■■□□ 2.33
PDLIM4-206ENST00000474421 TNS3Q68CZ2 1445 aa29.58■■■□□ 2.33
PDLIM4-206ENST00000474421 UPF1Q92900 1129 aaKnown RBP eCLIP29.58■■■□□ 2.33
PDLIM4-206ENST00000474421 USP32Q8NFA0 1604 aa29.57■■■□□ 2.32
PDLIM4-206ENST00000474421 MINK1Q8N4C8 1332 aaPredicted RBP29.57■■■□□ 2.32
PDLIM4-206ENST00000474421 HIRIP3Q9BW71 556 aaPredicted RBP29.57■■■□□ 2.32
PDLIM4-206ENST00000474421 ATRNO75882 1429 aa29.54■■■□□ 2.32
PDLIM4-206ENST00000474421 KIAA1210Q9ULL0 1709 aa29.54■■■□□ 2.32
PDLIM4-206ENST00000474421 WASLO00401 505 aaPredicted RBP29.54■■■□□ 2.32
PDLIM4-206ENST00000474421 ARHGEF28Q8N1W1 1705 aaKnown RBP29.54■■■□□ 2.32
PDLIM4-206ENST00000474421 ARHGEF10O15013 1369 aa29.53■■■□□ 2.32
PDLIM4-206ENST00000474421 TULP4Q9NRJ4 1543 aa29.53■■■□□ 2.32
PDLIM4-206ENST00000474421 PMFBP1Q8TBY8 1022 aa29.52■■■□□ 2.32
PDLIM4-206ENST00000474421 BCL9LQ86UU0 1499 aa29.52■■■□□ 2.32
PDLIM4-206ENST00000474421 HAP1P54257 671 aaPredicted RBP29.51■■■□□ 2.31
PDLIM4-206ENST00000474421 LMOD2Q6P5Q4 547 aa29.49■■■□□ 2.31
PDLIM4-206ENST00000474421 GPRASP1Q5JY77 1395 aa29.49■■■□□ 2.31
PDLIM4-206ENST00000474421 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.48■■■□□ 2.31
PDLIM4-206ENST00000474421 PRR36Q9H6K5 1346 aa29.46■■■□□ 2.31
PDLIM4-206ENST00000474421 SLIT2O94813 1529 aa29.45■■■□□ 2.31
PDLIM4-206ENST00000474421 UNC5CLQ8IV45 518 aa29.45■■■□□ 2.31
PDLIM4-206ENST00000474421 ITSN1Q15811 1721 aa29.45■■■□□ 2.3
PDLIM4-206ENST00000474421 TRPM3Q9HCF6 1732 aaPredicted RBP29.43■■■□□ 2.3
PDLIM4-206ENST00000474421 ATAD2Q6PL18 1390 aa29.43■■■□□ 2.3
PDLIM4-206ENST00000474421 GJD4Q96KN9 370 aaPredicted RBP29.43■■■□□ 2.3
PDLIM4-206ENST00000474421 NGDNQ8NEJ9 315 aaKnown RBP29.42■■■□□ 2.3
PDLIM4-206ENST00000474421 CABLES1Q8TDN4 633 aa29.42■■■□□ 2.3
PDLIM4-206ENST00000474421 ABCA3Q99758 1704 aa29.42■■■□□ 2.3
PDLIM4-206ENST00000474421 NUDT16Q96DE0 195 aaKnown RBP29.39■■■□□ 2.3
PDLIM4-206ENST00000474421 ALS2Q96Q42 1657 aa29.38■■■□□ 2.29
PDLIM4-206ENST00000474421 ATP7BP35670 1465 aa29.38■■■□□ 2.29
PDLIM4-206ENST00000474421 NWD2Q9ULI1 1742 aa29.38■■■□□ 2.29
PDLIM4-206ENST00000474421 PLEKHG5O94827 1062 aa29.37■■■□□ 2.29
PDLIM4-206ENST00000474421 NBPF1Q3BBV0 1214 aa29.37■■■□□ 2.29
PDLIM4-206ENST00000474421 CDK19Q9BWU1 502 aa29.37■■■□□ 2.29
PDLIM4-206ENST00000474421 RALGAPBQ86X10 1494 aa29.35■■■□□ 2.29
PDLIM4-206ENST00000474421 PLCH1Q4KWH8 1693 aa29.34■■■□□ 2.29
PDLIM4-206ENST00000474421 PAK3O75914 559 aaPredicted RBP29.33■■■□□ 2.29
PDLIM4-206ENST00000474421 L3MBTL2Q969R5 705 aa29.33■■■□□ 2.29
PDLIM4-206ENST00000474421 VPS72Q15906 364 aa29.32■■■□□ 2.28
PDLIM4-206ENST00000474421 CCDC61Q9Y6R9 512 aa29.32■■■□□ 2.28
PDLIM4-206ENST00000474421 GLI3P10071 1580 aa29.31■■■□□ 2.28
PDLIM4-206ENST00000474421 CENPJQ9HC77 1338 aaPredicted RBP29.3■■■□□ 2.28
PDLIM4-206ENST00000474421 FAM83GA6ND36 823 aa29.3■■■□□ 2.28
PDLIM4-206ENST00000474421 TOPAZ1Q8N9V7 1692 aa29.29■■■□□ 2.28
PDLIM4-206ENST00000474421 POLR3AO14802 1390 aaPredicted RBP29.27■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms